Gspi006874.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- lrrfip2
- Assembly
- GCA_959613385.1
- Location
- OY390732.1:24339627-24353712[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.17 6.6e+03 -2.9 1.0 165 179 65 79 33 119 0.46 2 3 1.2e-109 4.4e-105 352.3 30.5 1 300 199 494 199 494 0.94 3 3 0.049 1.9e+03 -1.1 5.1 121 167 493 539 492 569 0.63
Sequence Information
- Coding Sequence
- atGGAGAAAAGTGACAGCGTAGACTCTTTAGAGgatattttaaatcaactaaATAGCGATGGGGACGATGTACCTAACGTCGTTGGAAAAATCGGTGGTGCAAGTGGCTTAAGCAAAAGCACAAAAGACTTtgaaagtgatagtgataattCTGAAGATGACGATCAACAACTGAGTGAAAGAACTTGGGTGGAGGAAGCAAATGTTATAAATAGTGACCATCAAGTGAGTAAAACTGCACTAAAAAGAAGTGACCACGTTAACACTAACAATGAAAAAGTGGAAACTAGTCAGGACGTAGATGAATTTGGAAGTGTGTCCGGTCTGACAACTAAAGAAGAGACCGATACAGTTGAATGTCTAAACGAAGCCATTAACTtggataaaatcaaaattaatagtgtggaatttaataataatttagtggATAACGTTAGAAGAAATCAATTTGCAAAGTTGCAAATAGATGGCGCAATAGAGGACGAAAGCAACGATGAAGTTCCAAGAAGCACCAAAGTAACAAGGAGTCAAAGCATTAGCTCATATGTGGAGGAAGACATAATCAACCAATTCCTAGATAAATCCACAGATGATGCCGAGGCGCGTATGTTGGCGAGGCGACAGGCGAGAGCTGAAGCTAGGGATATTCGTATGCGGGAATTAGAACGACAACAGAAGGAACAAGAGGAAAATGCAGACAGACAGTTCGATAtgttggcggagcctgtggccAGAGCTGCGCGAACTTCGGGATCAAGGTACCTTTCGAGCAGGAGGAGCTCCGAGGATTCCCTGGAAGATGGGGGTAGCCTGCGAGAAATACGGCACGAGCTCAAAGAGGTGGAGGAAAAATTCAGGAAGGCCATGATCGCTAATGCTCAATTAGACAACGACAAGGCTGCCCAAACATATCAACTGGAACTACTTAAGGATAGGTTAGAAGAATTAGAAGAAGAACATTCGCAATTACGACGTGAACACCGTGATAAATGCCGAGAACATGATCAGCTGAAGAGGTTGTCGATTAGGCTTAAGGATGAATTGGCTGTGACCAAAGCCGAATTGGAGGAACGGGATAGGCTTATAGCAGAGAAAGGATTGGTAATAGTGGGTGAGGATCCGCAGCCAAACGAAGAACAAAGTCCTCCCGATGGCGTCGTAAACGGCCTCGGCACTCCGAAAAAGGCATTAGTTAGTGCTGAGAATGCACACTTGCTGGAAAATGCTGGTGAAGGAAGTTTAGATGTTCGGTTGGCAAGATTTGCGAAAGAAAAAGGCGAACTTCAAGatcagatcagtcatttgaaaTTGGAACTGGAAGAGGAAAGAAGTAAAAGGCGGAAGTCTAATTCATCCGGTATTACTCTCAATGGACCTACGACCGAAACTGATTATGACGCTGCAGATGTGCAAAGGGAGGTTAGCAAACAGTTGGCAGAATATAAGTTCAGAGCACAAAAGTCCGAACAGGATGTCGCGACACTTCAGGCAACCGTGGCAAGATTAGAAAGCCAAGTTATAAGATATAAATCTGCCTCGGAAGTGTCTGAGAAATCAGAAGAAGCTTTAAAAGCCGAGAAGAGGAAGTTACAAAGAGAGgCACGGGAAGCTATGAATAGGGCAGAAGAATTGGAAACATCAAATACACACTTACTTAAACGGTTAGataaacttaaaaatgcaaaatcagCTCTGCTTAAAGAACTTTGA
- Protein Sequence
- MEKSDSVDSLEDILNQLNSDGDDVPNVVGKIGGASGLSKSTKDFESDSDNSEDDDQQLSERTWVEEANVINSDHQVSKTALKRSDHVNTNNEKVETSQDVDEFGSVSGLTTKEETDTVECLNEAINLDKIKINSVEFNNNLVDNVRRNQFAKLQIDGAIEDESNDEVPRSTKVTRSQSISSYVEEDIINQFLDKSTDDAEARMLARRQARAEARDIRMRELERQQKEQEENADRQFDMLAEPVARAARTSGSRYLSSRRSSEDSLEDGGSLREIRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLRREHRDKCREHDQLKRLSIRLKDELAVTKAELEERDRLIAEKGLVIVGEDPQPNEEQSPPDGVVNGLGTPKKALVSAENAHLLENAGEGSLDVRLARFAKEKGELQDQISHLKLELEEERSKRRKSNSSGITLNGPTTETDYDAADVQREVSKQLAEYKFRAQKSEQDVATLQATVARLESQVIRYKSASEVSEKSEEALKAEKRKLQREAREAMNRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -