Gspi021136.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390736.1:37908782-37916268[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-12 7.3e-09 36.2 0.0 1 39 316 355 316 359 0.90 2 4 3.1e-13 6.8e-10 39.5 0.1 1 39 370 408 370 411 0.95 3 4 8.2e-19 1.8e-15 57.4 0.0 1 45 425 470 425 470 0.98 4 4 1.1e-16 2.4e-13 50.6 0.0 1 39 477 516 477 520 0.93
Sequence Information
- Coding Sequence
- ATGTGCACACCGGATGCATGCTTGCACTTTCACCCGGGCGCAGTTTCGGTTGCACCGGAAGTCACTTTTGAGGCATACGTCGAACTAACAGAGCGCTACGCGGGACAGTCTCTCCTGAAGACCGCAGATCAGCTGAAAATAAAGGGCCTCTGCGAATCGCCGGAAGAGAGGGAAAACACCGACGCGTCCTTCCCCTTCGTCGCGCAAGGCTACCCAAAGATACGCAGGATAGCGTCGCCGAAACATTTAAAACCGACCGACAACAACAGGAAGCACAAGTACAAGAAACCGGAGCGGAGGCGCTCGCTCGACAAAGAGGACGTCGAAAACAAGGATGGCGTCGCCAGCAACTCGTCGGACGAAGAAAGTGAAATGCCAATAGCGTTGGATGAAGAAAGCAGGAAACGGAAACTAGGCGAAAACCAGAATAGGCCGATTAACATGAGTAGCCATGGCCCCATGGCGGAACAGAATTTCTCATTCTCGCAGTTCGGAGTGGACAACGAAGATTTTCCGCCGGAACCCCTAGCCCCGACCGCGATTCCGGTCGGGAACGTCGACATGCAGGACCATTCCCCGACGAGGACGTTACTTACCAATTCCTCGATACACAGAACGGACATATCGGATAATATTGTAGATTCGCATATAAGATTCATCAAGACCGAGGCCGATATAAAATTAGAAACTCTGAGGTCGTACGATCAGGATTCCATCTTGGACATGGAAGCGTCGCACATGTCGGGGCCGGATCACTCCATGGACAGCCACGAAGACGCCAAACACGGCATGCACACCATGATGATCACGCCGGAGTTGCTGGGGATGATGCCGTCGTCGATGTCCCACAGATTAGATTCGGGTTGTAATGATATGTTAAAAACTAACGGTCATTCAGATCATCACACTCCAGGTCGCGGACACGGCGGGGGCCCAAAGACATGGACGCAGGAAGACATGGAGTTAGCTTTGGATGCCTTACGAAACCACAACATGAGTCTCACGAAGGCTTCAGCTACTTATGGAATCCCATCGACGACGCTGTGGCAAAGAGCGCACAGGCTGGGCATAGACACGCCGAAAAAAGAAGGACCTACCAAATCGTGGACTGAGGAGAATTTAAACTCTGCGCTTGAGGCGCTAAGAACCGGGACAATATCAGCGAATAAAGCGAGTAAAGCATACGggATACCTAGTAGCACGTTGTATAAAATAGCGAGAAGGGAGGGTATAAGACTGGCGGCGCCGTTTAATGCAGCTCCGACGACGTGGACGCCGGAAGATTTGGAAAAGGCCTTGGAGTCAATCAGAACGGGGCAGACGTCGGTTCAAAAGGCGTCTACGGAATTTGGTATACCTACCGGCACATTATATGGTAGATGTAAACGGGAGGGGATAGAACTATCCAGATCTAATCCAACTCCATGGTCGGAAGATGCGATGGGTGAAGCACTAGAAGCCGTTagATTAGGCCACATGTCGATAAACCAAGCGGCGATCCACTACAATTTACCCTACTCGTCGCTCTACGGCAGATTTAAGCGTGGCATCAAATACGAATCGGAAGCCATAGAGTTGAACTCGGATAGTCAGTCACATTTAGACGCCCAGGCGCACATGATGGACTATTCCAACTCCCATCAGTACCAACAGCACCCGACGAACAGCTGA
- Protein Sequence
- MCTPDACLHFHPGAVSVAPEVTFEAYVELTERYAGQSLLKTADQLKIKGLCESPEERENTDASFPFVAQGYPKIRRIASPKHLKPTDNNRKHKYKKPERRRSLDKEDVENKDGVASNSSDEESEMPIALDEESRKRKLGENQNRPINMSSHGPMAEQNFSFSQFGVDNEDFPPEPLAPTAIPVGNVDMQDHSPTRTLLTNSSIHRTDISDNIVDSHIRFIKTEADIKLETLRSYDQDSILDMEASHMSGPDHSMDSHEDAKHGMHTMMITPELLGMMPSSMSHRLDSGCNDMLKTNGHSDHHTPGRGHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYESEAIELNSDSQSHLDAQAHMMDYSNSHQYQQHPTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980857;
- 90% Identity
- -
- 80% Identity
- -