Gpol004354.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755083.1:11863033-11867813[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 6.4e-05 0.85 10.3 0.1 21 48 191 218 186 224 0.91 2 7 0.035 4.6e+02 1.6 0.0 24 44 223 247 219 252 0.76 3 7 0.019 2.5e+02 2.4 0.6 21 53 248 279 244 280 0.79 4 7 0.00038 5.1 7.8 0.0 21 44 354 377 348 384 0.90 5 7 0.19 2.5e+03 -0.7 0.0 26 51 387 412 380 415 0.81 6 7 0.024 3.2e+02 2.1 0.0 21 44 410 433 402 437 0.89 7 7 0.00018 2.3 8.9 0.0 21 46 438 463 426 466 0.85
Sequence Information
- Coding Sequence
- ATGTATGAAATTGATAGAATTTTTAATCCGGTCGCCgagttttcatcaatttgtcggaCCTGTCTGAATATGGAACAATTAGAACCGTTGACGGAAAATTCTCTAATTATTCTAATAACAAAACTAACAGATATTCAGATCAACCTGAATGACGAACttccaaaaaatatttgcaGCACATGTattagaaaattgaatgaagtgGCAACTTTCATTGGCAAAGTAAAACATAATGATACCTACCTAAGAAATATGCTTGTGAGGAAATGCAAATTGGAAGGTTCAGATTTCAATGAAGAATCTGGAGATGTCAAATTTGACAATGATGATATATCTAAGGAAGAATATTCTGAGATACCTATTGAAGAAATTAAAATAGAAAAGAGGAGTAAAAGGAAAACTTCATTTAAATGCCATACCTGTGGTAAACAATTCATCACAAAACAGAACCTTACTGAGCACCAACAAAAGAATTCAACTTGTAGAACCATCAGTCAGTTCATATGTAACAACTGTAATAAAGCATTCTCTACTAAGACTAGGCTGAGTGATCATATTAGGATCCATACTAAAGAGTCCCCATATGAATGCAAGATAtgcttgaaaaaattcaatcatgCTTCAAACATGAAACGACATGTGAATTTAGTCCATAAGGGTTTAAAACCTTTCAAGTGTGATATCTGTGGTAAAGAATTTGGAACATTGATAAGACAAATGGAGCATCTTAGAGTCCACACAGGAGAAAGACCCCATGTTTGTAGCTACTGTGGCATggctttcaaaaaatattcaacaagaaGAGCTCACGAGGTGCGACACAAAATAAAAAACGGCGAAATCCCAAAATGTgagaaaattccgaaaaaatatcCTCGGATACCGCCCAAGGATACCAAAGACTTACATTGTGAAAACTgtgataaatttttttccaCCAAACATAGTCTTGCTGTCCACAAACAGATACACTTGGGTGAAAAAACGTTTTTGTGTAACGTTTGTGGCAAGGGATTCATACGAAAGAGCCACCTGGAAGTGCATGTCAGAATACATACAGGCGAAAAGCCATTCGAGTGTCCCGATTGTGGAAAGAGATTTAGACAGGCAGGGTCTCTCAGAAATCATGTACTTATCCATAAAGGCCAAAGGTCTTTCAAATGTGAGatcTGTCAGAGAACTTTTGTGCAGTTGGGACACCTCAAGAACCATTTTAAAATACATAGCGGAGAGAAGCCTTATAAATGTACTTTTTGTGATAAAGAATTCGCGCAAAACGGCAACCTGAAAGCTCATACGAGAATACACACCGGCGAAAGGCCTTATAGGTGCAGTATATGCTTTTCCGGATTCTGCGACTCCACCAGTCTCAAAAAGCATATGAAAATCcacgaaaataatgaaaacttgAATTAA
- Protein Sequence
- MYEIDRIFNPVAEFSSICRTCLNMEQLEPLTENSLIILITKLTDIQINLNDELPKNICSTCIRKLNEVATFIGKVKHNDTYLRNMLVRKCKLEGSDFNEESGDVKFDNDDISKEEYSEIPIEEIKIEKRSKRKTSFKCHTCGKQFITKQNLTEHQQKNSTCRTISQFICNNCNKAFSTKTRLSDHIRIHTKESPYECKICLKKFNHASNMKRHVNLVHKGLKPFKCDICGKEFGTLIRQMEHLRVHTGERPHVCSYCGMAFKKYSTRRAHEVRHKIKNGEIPKCEKIPKKYPRIPPKDTKDLHCENCDKFFSTKHSLAVHKQIHLGEKTFLCNVCGKGFIRKSHLEVHVRIHTGEKPFECPDCGKRFRQAGSLRNHVLIHKGQRSFKCEICQRTFVQLGHLKNHFKIHSGEKPYKCTFCDKEFAQNGNLKAHTRIHTGERPYRCSICFSGFCDSTSLKKHMKIHENNENLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00740213;
- 90% Identity
- iTF_00740213;
- 80% Identity
- iTF_00740213;