Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: Rreb1
Assembly: GCA_963576655.1
Location: OY755091.1:9505268-9514470[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00012 0.011 16.7 1.1 1 23 84 106 84 106 0.96

2 16 0.00014 0.013 16.4 0.3 1 23 119 141 119 141 0.98

3 16 5.9e-05 0.0054 17.7 6.4 1 23 147 169 147 169 0.98

4 16 9.8 9e+02 1.2 0.3 1 9 229 237 229 237 0.89

5 16 0.1 9.5 7.4 0.8 2 23 259 281 259 281 0.96

6 16 0.014 1.3 10.2 1.1 1 20 327 346 327 348 0.93

7 16 0.071 6.5 8.0 0.1 1 23 470 492 470 492 0.96

8 16 4.8e-05 0.0044 17.9 1.9 1 23 501 523 501 523 0.98

9 16 0.0014 0.13 13.3 2.3 1 23 529 552 529 552 0.97

10 16 0.00049 0.045 14.8 3.0 1 23 931 954 931 954 0.97

11 16 0.00049 0.045 14.8 0.4 2 23 1170 1191 1169 1191 0.97

12 16 0.12 11 7.2 6.3 1 23 1197 1220 1197 1220 0.97

13 16 0.042 3.8 8.7 1.1 1 20 1248 1268 1248 1269 0.94

14 16 0.09 8.2 7.7 1.0 1 23 1327 1350 1327 1350 0.96

15 16 0.016 1.5 10.0 0.4 3 23 1397 1417 1395 1417 0.93

16 16 0.0074 0.68 11.1 5.9 1 23 1423 1445 1423 1445 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00012	0.011	16.7	1.1	1	23	84	106	84	106	0.96
2	16	0.00014	0.013	16.4	0.3	1	23	119	141	119	141	0.98
3	16	5.9e-05	0.0054	17.7	6.4	1	23	147	169	147	169	0.98
4	16	9.8	9e+02	1.2	0.3	1	9	229	237	229	237	0.89
5	16	0.1	9.5	7.4	0.8	2	23	259	281	259	281	0.96
6	16	0.014	1.3	10.2	1.1	1	20	327	346	327	348	0.93
7	16	0.071	6.5	8.0	0.1	1	23	470	492	470	492	0.96
8	16	4.8e-05	0.0044	17.9	1.9	1	23	501	523	501	523	0.98
9	16	0.0014	0.13	13.3	2.3	1	23	529	552	529	552	0.97
10	16	0.00049	0.045	14.8	3.0	1	23	931	954	931	954	0.97
11	16	0.00049	0.045	14.8	0.4	2	23	1170	1191	1169	1191	0.97
12	16	0.12	11	7.2	6.3	1	23	1197	1220	1197	1220	0.97
13	16	0.042	3.8	8.7	1.1	1	20	1248	1268	1248	1269	0.94
14	16	0.09	8.2	7.7	1.0	1	23	1327	1350	1327	1350	0.96
15	16	0.016	1.5	10.0	0.4	3	23	1397	1417	1395	1417	0.93
16	16	0.0074	0.68	11.1	5.9	1	23	1423	1445	1423	1445	0.98

Sequence Information

Coding Sequence: ATGCAGGGGACAGTTCTTATGCCCCACAATCCCCAACAAGGCTTTCCTCCGGCATCAGGAACTATAGTTACCGGCATGGAATCGCTTCCATCAATAAATCAGGCAACCAAAGAAGCTCTAGCCAATCGCAGCGACTCCGGCATTTTCTCGACTACTAACACCACCATAGAGCAGACCGACTTGTCGAAAACGCCATCAGAACAGTACGACACCGACAATCGCAGCGACTGCTCTTCTCCTGGAAGGAAGTACCTGTGCCCTATTTGCGAGAAAATGCTGACATCGCAGCACGAGTTCACCTTGCACATTCGCTCGCACAACAACGAGAGCGAGGTCCAAGACGTGGAAAAAGGATATACTTGCAGAATATGCTCCAAAGTGTTGAGCTCCAGCAGTAGCTTGGACAGACACGTTCTGGTGCACAGTGGAGAGCGGCCATTCCACTGTAAATATTGCGGAGACACGTTCACGACTAATGGAAACATGCACAGGCATATGAGGACACATTCGCAGAAGGCTGAAAACAGCTACGAGTCCGATGGTAGCTCAGATACTGGCAGTTCGAAGAGTACTGAGTTCAACAACAATAAAGTTGAGAAGGGAATCAAGAGGAAGAACGAGAACCTAGACACTGCGGAGAAGAGGATAAAGGAAGAATTCTCTGATACTGAGACACCACAAACGTTCAAGTGTCCAGTATGCGAAAGAAGCGACTTCAATACGATCAACATTCTGGAAACGCATTTGGAAGACAATCATCCCGATTATCCCGCCAAATGCAATATGTGCAAGCAAGTGTTCCTGAACAACAAATTGCTGATTCTTCACAAAGCCACTCTCCATGAAAATACTATCAATAGACAGCCAGTGTTTGGTTTCAAAGACCTCACGTTCGTAGACTTCTCAAGCGAGAAGTTTCCGCTCATCGCTAGAAGGGAGTGCGAAATGAACCTGCACAAAGTCTCAGGAGGACTGAAGTTCCAATGCAAGAAATGCAACAGGGCTTTCCCTTGTTCCAGCTCATTAGAAATCCACGAGAAAGGCTGTATCCCTGCCGAGCATACCAACGGCCTCGATCTCACTTCAATCTCCAAACCTGAGATCAGACGAATGGACTTTTTCTCTAGGTTGAACCTAGTAGATAATTCTCCAGAAAAGTCACCTCCAAGCCCTAACAAGCTCAGGCAACATATTGGTAAAAACATGGATACCAGTACCCATGACCTGGCTGATATTCAATCGATCCTTTCGAACATCAATCTGCAACAGTTGCAAGACAAACAAACGGAACCACGACACGCTACACCGAAACCTGTAGAACAGCCTTCTGAGATCCAGAAGAATGAGGAAGAAGAATCCCAAGATATTTTTGCTGTcgaattcaggaaaatgaagaTGCGTGGCGAATTTCCGTGCAGGCTTTGCACAGCAGTATTCCCGAATCTCAGAGCGCTCAAAGGTCACAATAGAGCCCATCTGAATGGGAACAATAATGGCACTTACCACTGCAACATGTGTCCCCACTCTTCCATCGATAAAGCTGCGCTGATTCGTCATATGCGGACACACAACGGTGACAGACCTTACGAGTGCGCCCTATGTAACTATGCTTTCACCACCAAAGCCAACTGTGAGCGACACTTGAGAAACAGGCATGCCAAAACTACAAGGGAcgatgtgaaaaaatcaatcatttacCACCCTTCCGAAGATCCCACCAATGAGGATTTGAACAAACTAAATACCAAAGATGATTCAAAGAAGCAAAACCTAAATGATACTGAGGATTATGACAAGGTGCATTGCTCGACGCCCAAGTACCCTGCTGAAGCTATCCATAAACCAACCATTCCACAGATGATTCCAGATCTGCAATCTCTCAGACCCACTAAATTGTTCTCGAATATTAACGATATAATACGTTGCGAAAATCTGAAAACGTTAAAAGAGCACAGACATGTTCATCAACAAAATGGATCAGTACCTTCGCCAGGGAAAATCCAAGTGAGAAATATCGAAGTTCTCAAAGAAACCAGTTCATACAATAATGATTCCGAAGACGAGTACATTGAAGAGGAAGACGAACAACCTTTGGATTTGGTTTTAGATTTGAGTAAGAAGAAGTGCGATGAGATGAGTAGACACAGTACTGAAGAAGACGATGATGAACCCCAAGACCTCACGAAGAAATCCCCACCCCTTCCTACCCATATTCCTCCTCAACTACCTCCGCATATGGGGCAGATGTTCGCTAATCAGTTTCTGAAGACTCCACCAAAGATCGATCCAGCCGCTCTATACGCAACGCAGCTTGCTCTGTACAGAAGTGGATTTCCTGGGATCCCCAGCTGGCCTGGTTTCCCCCTCAACACCTTGCTCTTTCCTACTCTACCTTCAAACTTACCTCAAAACGCCCAGGAAATGAAAGAACGAATGCAACGGTTGCAGATGTGTGGTGGATCGGTGATCACCGAAGAACTGAAGAACCTACATAATTTACACAGTCCTCTTCGAAGTCCTACAGTTGCTTACAATAATGGTTATAAAATGGAGCCCAAACCCGATATAGTCATGAAAAGTAATTTCTCTACTCCCAATAAACCTGACCAAATGAAGCCGCTAAGCTTGACTATTGAATCAAATTTCGGAGAGAATATGTCGAAAGTACATAGTCCAATCCCACCTAACAAACATGACATGATGCAGTCTCCAAATTCAGTGAAGATGGTTATTAAGAACGGTATTTTGATGCCCAAACAGAAGCAGAGACGATACAGGACAGAGAGACCCTTCACCTGCGAACATTGCTCGGCTAGATTCACACTTCGTTCCAATATGGAGAGGCATATCAAACAACAACACCCGCAGTACTGGTCGCAGAGACAACGTGGCAATGTTGGTAATCCTGGAAAGAAACCACCGATGCCTTTGAAGACTGGTTACTGTGATATTAGCATTCCCAATTATGAGTTACCAAAGGTACCCGAATATTGTGACACCAAAGACATGCTCAGCGAGAAAATCAAGTTTGCCATTATGGCCCAGCAAATGAGAGCCAACCACGATATGCACGAATATGGCCAAAAGGAGGAAGAGGAAGATTGTGGTCTagtgattgatgaaaatgacgAAAAGGACGATTCGATATCGGAGGAGCACGACAACACAGAACGAAATGTCTTAACAAGTCGCATATTGGAAGATCGATTGCGCGAGATGCATAAGTTCAAGATAGAGAAGCCTATCAAGAATGAAGAGAGCTCTGACTTGGTACCCGTTTCTCGGTTATTGGATAATGCATCGCAGCAAcaattcaatgagtttttcaagagaaatagtGAAGACGCTGAAGTTGGAATGGCCAgcgaagaagatgaagaagggCTAGTAGCCAGTGGAAGTACGAGTGAAGAAAATGTATCTGGCACAGACGAAAACAAGTCAGAGTCCGAGACTGTACAGCCAGTCAAAAAGAAATCTGCCTATTCATTGGCACCTAACCGCGTCAGCTGTCCATATTGCAGTCGCAAATTCCCTTGGACATCGTCCCTACGAAGACACATACTCACCCACACAGGACAGAAACCCTTCAAATGCAGTCACTGCCCCTTACTGTTCACCACCAAATCCAACTGTGACCGCCACCTTTTGAGGAAACACGGCAACAGCGCATCCACCATTTCCAATGAACCTGGCAACAACAATTCCAACTATTTGATGCGAAACGTGCCCGAGCGACCGTTCAAGTGTTCCAGCTGCCCGAGCAGCACCTTCTCAACATATTCGAACTTGAAAAAGCATATCAGCTGCAAACACTCGGCGAATGCGCAAGACGACGAAATCAAAGCCCAAGGCTACGAAGCGGGAAGCTCCGAGGACGAAAAGCTCCCGTGCCTAGAAACGAAAAACGACTGGGAAAACCAGCTGACCTACAACAAGATACCCGTCGATTCCGTCGTCCAAAACTCGGATCTGCCTTTCAAGTGCCACCTGTGCGAGGGTTCGTTCTCCGAGCGCCAAGATGCGCTCGACCACATCCGCGACAAACACGCGTCCGAGTACGACCTGCTGATGTCGAAGAACGCGTTGGACAGCAACGCCACCACTCCCGACGACGTTGCCCACCAGGACGACGAGGACAGCGAGATCAGGGGCAAGTTCCCGGACTACTCCAATAGGAAGGTCATCTGCGCGTTCTGCATGCGCCGATTCTGGTCGGCGGAAGACCTGCGCAGGCACATGCGCACGCACACCGGCGAGCGGCCGTTCAGTTGCGACATCTGCAGGCGCAGATTCACGCTAAAGCACAGCATGCTGCGCCACAGGAAGAAGCACAACGTGAACTCCGAGCACGATACCAACAACAGCGACGAGGACGGCAACAACGCTCCGTCGCCGACGTACAATAAGACCTCGGAGGGTCAGATTTGCCTCAAGACTGACGAATCTGACGGGACCGAAGGTGGGGGAGATCTGATCAGCAACTTGTTAGGGCTCAGGGATAGATCGATTATCGATAAGGTGTTGGCTGCCTCAGCTGATGACGCCGCTAAATTGTTAGGAGTCAGGAATGGCGTTAAAGAGTGA
Protein Sequence: MQGTVLMPHNPQQGFPPASGTIVTGMESLPSINQATKEALANRSDSGIFSTTNTTIEQTDLSKTPSEQYDTDNRSDCSSPGRKYLCPICEKMLTSQHEFTLHIRSHNNESEVQDVEKGYTCRICSKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSQKAENSYESDGSSDTGSSKSTEFNNNKVEKGIKRKNENLDTAEKRIKEEFSDTETPQTFKCPVCERSDFNTINILETHLEDNHPDYPAKCNMCKQVFLNNKLLILHKATLHENTINRQPVFGFKDLTFVDFSSEKFPLIARRECEMNLHKVSGGLKFQCKKCNRAFPCSSSLEIHEKGCIPAEHTNGLDLTSISKPEIRRMDFFSRLNLVDNSPEKSPPSPNKLRQHIGKNMDTSTHDLADIQSILSNINLQQLQDKQTEPRHATPKPVEQPSEIQKNEEEESQDIFAVEFRKMKMRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYHCNMCPHSSIDKAALIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHAKTTRDDVKKSIIYHPSEDPTNEDLNKLNTKDDSKKQNLNDTEDYDKVHCSTPKYPAEAIHKPTIPQMIPDLQSLRPTKLFSNINDIIRCENLKTLKEHRHVHQQNGSVPSPGKIQVRNIEVLKETSSYNNDSEDEYIEEEDEQPLDLVLDLSKKKCDEMSRHSTEEDDDEPQDLTKKSPPLPTHIPPQLPPHMGQMFANQFLKTPPKIDPAALYATQLALYRSGFPGIPSWPGFPLNTLLFPTLPSNLPQNAQEMKERMQRLQMCGGSVITEELKNLHNLHSPLRSPTVAYNNGYKMEPKPDIVMKSNFSTPNKPDQMKPLSLTIESNFGENMSKVHSPIPPNKHDMMQSPNSVKMVIKNGILMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRQRGNVGNPGKKPPMPLKTGYCDISIPNYELPKVPEYCDTKDMLSEKIKFAIMAQQMRANHDMHEYGQKEEEEDCGLVIDENDEKDDSISEEHDNTERNVLTSRILEDRLREMHKFKIEKPIKNEESSDLVPVSRLLDNASQQQFNEFFKRNSEDAEVGMASEEDEEGLVASGSTSEENVSGTDENKSESETVQPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSASTISNEPGNNNSNYLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHSANAQDDEIKAQGYEAGSSEDEKLPCLETKNDWENQLTYNKIPVDSVVQNSDLPFKCHLCEGSFSERQDALDHIRDKHASEYDLLMSKNALDSNATTPDDVAHQDDEDSEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNSEHDTNNSDEDGNNAPSPTYNKTSEGQICLKTDESDGTEGGGDLISNLLGLRDRSIIDKVLAASADDAAKLLGVRNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00331008;
90% Identity: -
80% Identity: -