Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755083.1:397967-399790[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0019 0.18 12.9 2.2 1 23 114 137 114 137 0.97

2 15 0.00069 0.063 14.3 0.1 2 21 149 168 149 169 0.94

3 15 0.12 11 7.2 4.6 1 21 184 204 184 205 0.93

4 15 0.0002 0.019 16.0 4.6 1 22 215 236 215 236 0.96

5 15 0.00013 0.012 16.6 0.1 1 23 246 269 246 269 0.96

6 15 0.0002 0.018 16.0 2.3 1 23 274 297 274 297 0.97

7 15 0.79 72 4.7 0.2 1 23 308 331 308 331 0.82

8 15 1.8e-06 0.00016 22.4 2.6 1 23 341 363 341 363 0.97

9 15 0.00025 0.023 15.7 0.2 3 23 371 391 370 391 0.94

10 15 0.00035 0.032 15.2 4.6 1 19 397 415 397 420 0.90

11 15 1.2e-07 1.1e-05 26.1 2.7 1 23 428 450 428 450 0.98

12 15 7.8e-07 7.1e-05 23.6 1.8 1 23 456 478 456 478 0.97

13 15 1.4e-06 0.00013 22.7 1.2 1 23 484 507 484 507 0.98

14 15 7.4e-05 0.0068 17.3 6.6 1 23 521 543 521 543 0.97

15 15 0.00019 0.018 16.0 2.0 1 23 549 572 549 572 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0019	0.18	12.9	2.2	1	23	114	137	114	137	0.97
2	15	0.00069	0.063	14.3	0.1	2	21	149	168	149	169	0.94
3	15	0.12	11	7.2	4.6	1	21	184	204	184	205	0.93
4	15	0.0002	0.019	16.0	4.6	1	22	215	236	215	236	0.96
5	15	0.00013	0.012	16.6	0.1	1	23	246	269	246	269	0.96
6	15	0.0002	0.018	16.0	2.3	1	23	274	297	274	297	0.97
7	15	0.79	72	4.7	0.2	1	23	308	331	308	331	0.82
8	15	1.8e-06	0.00016	22.4	2.6	1	23	341	363	341	363	0.97
9	15	0.00025	0.023	15.7	0.2	3	23	371	391	370	391	0.94
10	15	0.00035	0.032	15.2	4.6	1	19	397	415	397	420	0.90
11	15	1.2e-07	1.1e-05	26.1	2.7	1	23	428	450	428	450	0.98
12	15	7.8e-07	7.1e-05	23.6	1.8	1	23	456	478	456	478	0.97
13	15	1.4e-06	0.00013	22.7	1.2	1	23	484	507	484	507	0.98
14	15	7.4e-05	0.0068	17.3	6.6	1	23	521	543	521	543	0.97
15	15	0.00019	0.018	16.0	2.0	1	23	549	572	549	572	0.94

Sequence Information

Coding Sequence: ATGACTGCAAATCAGTGTTCAATTTGCTTGAAAGTTGCTGATTTTATAAATACGGTACATGATACTGATGAGAATGGTGTGGAATGGACAATTAAACTTCAGTATGTTGTACCGGAAGTGGAGTGGGATGGTAACTACTTCATTTGTGAAAACTGTATACAGGAGTTGAGAGTTGCATATACTTTCAGAGGGCATTGTCTCAACATATTAAACAATGTCAAAAGTGAAGCAGAGAATGACTTTTGTCCTGCACCTCTCAAATCTGAAGAGGATTATGAAAGTGATATGATGGAAGATACATCAGGTTTTGATACCAATGAACTAGATGACCAGAAAATGTTCACATGTTATCATTGCAATGATTGTTTCAATGTGAAAGATGATCTGATAGAACACATCGATACAGCTCATAATACTCTTATCTCAAGGTACAAACGAACTGAGAAATGTTCACGCTGTGGTCGAAAATTTGCCAAAAATGCATCACTCAtggaacatattgaaatatgtgatgGAGTTAGTAGGCATGCTCGAATGGGTGAGAAGGAGCATCAATGTGATAAATGCAAGAGATTCTACTCTACTAAAAAAATATTACGCCAACATAAAAAAAGGTGTACAACAAAAAATCTGGAAACAAACTATCAGTGTACGAAATGCAAAACCTTCTACAAACATCTGAGTTCTCTtcaaaaacatcaaaaaatgtCATGTCAAAAAGATGATACTATCCCGTTTTATTGTGAAGTTTGTGATGAATCTTTTCAGTCAACTGGTAAACTTGAGGAACATATGATGGAAGAGcacaaaaatcatatattttattgtagAATCTGTGGTGAATCATTCAAGTCAAGTCTTGAATACACTAAccataaaaaatcaaaacacaaacaAGAGATTCTGGGAAAAGGAAGAACATTCACTTGTGATATTTGTGATGACAAATTTAAATTCGTTAAAGCCATAATTGAACACTACGGTAGTGTCCACTCTGTAGAAGAAAAGCTTGTTAAACCATATAGTTGCGAAATTTGTAACAAAAGATTCAGGACTTCGACTAATCTCAACAATCATAAACTCTATCACGGAAACAACAGGACAAACATATGCAGTATGTGCGGTAATAGTTTCATAACTAAAGGAGATCTCATGAGACATGAAACACTCCATTTCGATGACAGAAATCACAAGTGTGATAAATgtgaaaaaacattcaaaactaTGGATAACTTGAAAACGCATTGCTTGATAGTGCACACTGATCCGATAATGTGGAAATTCGTATGTCACGTATGTGGAAAAAGATTCCCTCAGAGATCCAACTATGAACAGCATCTGAGGAGACACTTGGGAGAGAAGAAATTCGTTTGTACAATTTGCAACAAGGCTTTCGTTACTAATAAGGAGCTACAGAAACATATGGATCACCATTCAAATGATAGACACTACAGGTGCGATCAGTGTGGAAAAGCATTCAGACAGAAAAATAGTCTTGATGTACATCTAAAGAGAACTCATGGAATCGGTAACGCCAAAATACCTGTGAGAGAAAGGAAGCATCCTTGTCATATCTGTCATGCTAGGTTTTATGATAAGTCTAAATTATCTAGACATGTACGTACTCACTCAGGATTGAAGCCTTTTGCTTGTTTTGCAtgcgaaaaaaaattcaatgataagtCTTATTTGAAACAGCATCTCAAAAATTCACATAACATCATGGAAGATCCTGATGGTCTTAAACTTTTTGTAATGGCATAG
Protein Sequence: MTANQCSICLKVADFINTVHDTDENGVEWTIKLQYVVPEVEWDGNYFICENCIQELRVAYTFRGHCLNILNNVKSEAENDFCPAPLKSEEDYESDMMEDTSGFDTNELDDQKMFTCYHCNDCFNVKDDLIEHIDTAHNTLISRYKRTEKCSRCGRKFAKNASLMEHIEICDGVSRHARMGEKEHQCDKCKRFYSTKKILRQHKKRCTTKNLETNYQCTKCKTFYKHLSSLQKHQKMSCQKDDTIPFYCEVCDESFQSTGKLEEHMMEEHKNHIFYCRICGESFKSSLEYTNHKKSKHKQEILGKGRTFTCDICDDKFKFVKAIIEHYGSVHSVEEKLVKPYSCEICNKRFRTSTNLNNHKLYHGNNRTNICSMCGNSFITKGDLMRHETLHFDDRNHKCDKCEKTFKTMDNLKTHCLIVHTDPIMWKFVCHVCGKRFPQRSNYEQHLRRHLGEKKFVCTICNKAFVTNKELQKHMDHHSNDRHYRCDQCGKAFRQKNSLDVHLKRTHGIGNAKIPVRERKHPCHICHARFYDKSKLSRHVRTHSGLKPFACFACEKKFNDKSYLKQHLKNSHNIMEDPDGLKLFVMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00330920;
90% Identity: -
80% Identity: -