Caen026102.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000025.1:131015-132831[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0069 1.1 11.4 0.7 1 23 112 135 112 135 0.93 2 15 0.0032 0.49 12.4 0.1 2 20 147 165 147 167 0.93 3 15 0.14 22 7.2 4.6 1 21 182 202 182 203 0.93 4 15 0.00027 0.041 15.8 3.9 1 21 213 233 213 234 0.96 5 15 0.00014 0.022 16.7 0.7 1 23 245 268 245 268 0.94 6 15 5.2e-05 0.008 18.0 1.6 1 23 273 296 273 296 0.97 7 15 0.081 12 8.0 0.1 1 23 307 330 307 330 0.85 8 15 2.4e-05 0.0037 19.1 3.4 1 23 340 362 340 362 0.97 9 15 0.00015 0.023 16.6 0.2 3 23 370 390 369 390 0.94 10 15 0.0004 0.061 15.3 4.9 1 19 396 414 396 419 0.90 11 15 1.4e-07 2.1e-05 26.1 2.7 1 23 427 449 427 449 0.98 12 15 1.2e-05 0.0018 20.1 1.3 1 23 455 477 455 477 0.96 13 15 1.3e-05 0.0019 20.0 1.2 1 23 483 506 483 506 0.96 14 15 1.2e-05 0.0019 20.0 5.7 1 23 520 542 520 542 0.97 15 15 0.00051 0.078 14.9 1.9 1 23 548 571 548 571 0.94
Sequence Information
- Coding Sequence
- ATGACGACAAAACAGTGCTCATTTTGTTTAAAAATTGCTGAAATTTTGAATGCAGTAcatgatattgatgaaaatggTATAAAATGGACAACAAAACTGCATTACATTGTTCCAGAAGTGGAGTGGGACAGTCACTATTTGATCTGTGAGAATTGTATACATGAATTAAAAGTTGCTTGTACCTTTAAGGAAAATTGTCTTAACCTATTGAAGGATGTCAAAGGTGAAGCAAAAAATGAGAACTGCTCTGAGTCTCTCAAATTTGAAGAATATGAAAGTGATATACCCATGGAAATGGGCTCTGATATTAATGATGAAGATGAACATAAAGTTTTTACATGTTATCATTGTAATGACAGTTTTAATGAGAAAGATTATCTCATAGAACATATAGATGCAGTTCATAATTCACTCACTTCAAAGTATAAAcgaaatgaaaaatgttcacGTTGTGGACGCAAGTTTGCAAAGAATGCATCATTAATAGAACATGCTGAGATATGTGATGGAGTTAGCAGGCATGCCCGAATGGGTGAAAAAGAACACCAATGTGATAAATGTAAGAGATTCTActctacaaaaaaaatattacgaCAACATAAGAAGAGATGTACAACAAAGAATCTTGAATCTAACTATCAATGCACAAAATGTCAAACATTCTACAAACATTTGAGTTCTCTACAAAAACATCAAAAGTTATCTTGTCAGAAAGATGATACTAAACCATTATTTTTTTGTGAAGTTTGTGATGAATCTTTCCAATCTTCTCATAAACTTGAAGAACATATGATTGAAGAGCATAAAAACCACATATTTTATTGTAGTATTTGTGGTGAATCTTTCAATTCTAGCTTAGAATACACAAACCACAAGAGATCAAAACATAAGCAAGAAATTCTGGGTAAAGGAAGAACATTCACATGTGATATTTGCAATGAGCAATTTAAATTTGTTAAAGCTATCATTGAACACTATGGTGTTGTTCATTCTGTGGAGGAAAAGCTTGTTAAACCATACAGTTGTGAAACTTGTAGCAAGAGATTCAGGACCTCAACTAATCTCAACAACCATAAACTGTATCATGGAAATAATAGGACAAATATATGCAGTATTTGTGGAAACAGTTTCATAACTAAAGGGGATCTAATGAGACATGAAACACTTCATTATGATGACAGAAATCACAAATGTGATAAATGCCAGAAAACCTTCAAAACCATGGATAATTTGAGAACTCATTGTTTAATTGTTCACACTGATCCTATGATGTGGAAATTTGTTTGTCATGTATGTGGAAAACGATTTCCACAGAGGTCCAACTATGAACAGCATCTGAGAAGACATCTAGGAGAGAAGAAGTTCATATGTGCCCTTTGTAATAAGGCTTTTGTTACTAATAAGGAATTACAAAAACATATGGATCACCATTCCAATGATAGACACTACAGGTGTGATCAGTGTGGAAAAGAATTCAGACAAAAAAATAGTCTAGACATTCACCTAACAAGAACCCATGGAATTGGTAATGCAAAAATACCTGTAAGAGAAAGAAAGCATCCTTGTCATATCTGTCATGCAAGATTTTATGATAAGTCAAAATTAGCTAGGCATATTCGTACACACTCAGGATTGAAGCCATTTGCTTGTTTTGcttgtgaaagaaaattcaatgaTAAATCTTATTTAAAACAGCATCTCAAAAATTCTCACAATATTATGGAAGATCCTGATGGTCTCAAGATTTTTGCAATGGAATAG
- Protein Sequence
- MTTKQCSFCLKIAEILNAVHDIDENGIKWTTKLHYIVPEVEWDSHYLICENCIHELKVACTFKENCLNLLKDVKGEAKNENCSESLKFEEYESDIPMEMGSDINDEDEHKVFTCYHCNDSFNEKDYLIEHIDAVHNSLTSKYKRNEKCSRCGRKFAKNASLIEHAEICDGVSRHARMGEKEHQCDKCKRFYSTKKILRQHKKRCTTKNLESNYQCTKCQTFYKHLSSLQKHQKLSCQKDDTKPLFFCEVCDESFQSSHKLEEHMIEEHKNHIFYCSICGESFNSSLEYTNHKRSKHKQEILGKGRTFTCDICNEQFKFVKAIIEHYGVVHSVEEKLVKPYSCETCSKRFRTSTNLNNHKLYHGNNRTNICSICGNSFITKGDLMRHETLHYDDRNHKCDKCQKTFKTMDNLRTHCLIVHTDPMMWKFVCHVCGKRFPQRSNYEQHLRRHLGEKKFICALCNKAFVTNKELQKHMDHHSNDRHYRCDQCGKEFRQKNSLDIHLTRTHGIGNAKIPVRERKHPCHICHARFYDKSKLARHIRTHSGLKPFACFACERKFNDKSYLKQHLKNSHNIMEDPDGLKIFAME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00740220;
- 90% Identity
- -
- 80% Identity
- -