Basic Information

Insect: Gastrophysa polygoni
Gene Symbol: -
Assembly: GCA_963576655.1
Location: OY755088.1:1867487-1878181[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.5e-05 0.0069 17.3 2.0 1 23 393 415 393 415 0.96

2 18 2.8e-05 0.0025 18.7 1.8 1 20 421 440 421 443 0.94

3 18 0.0003 0.027 15.5 1.7 1 23 449 471 449 471 0.98

4 18 0.00015 0.014 16.4 4.0 1 21 477 497 477 499 0.94

5 18 0.00014 0.013 16.5 4.7 1 23 505 527 505 527 0.99

6 18 2.6e-05 0.0024 18.8 5.3 1 23 533 555 533 555 0.97

7 18 4.9e-07 4.5e-05 24.2 5.0 1 23 561 583 561 583 0.98

8 18 1e-07 9.2e-06 26.4 2.7 1 23 589 611 589 611 0.98

9 18 7.4e-05 0.0068 17.3 6.7 1 23 617 639 617 639 0.97

10 18 4.4e-05 0.004 18.1 5.8 1 23 645 667 645 667 0.97

11 18 1.8e-06 0.00016 22.5 2.5 1 23 673 695 673 695 0.98

12 18 3.5e-05 0.0032 18.4 8.0 1 23 701 723 701 723 0.98

13 18 3.8e-05 0.0035 18.2 9.5 1 23 729 751 729 751 0.98

14 18 1.7e-05 0.0016 19.3 7.7 1 23 757 779 757 779 0.98

15 18 5.6e-05 0.0051 17.7 7.6 1 23 785 807 785 807 0.97

16 18 0.00017 0.016 16.2 0.2 1 23 813 835 813 835 0.97

17 18 0.13 12 7.1 4.0 1 23 845 867 845 867 0.98

18 18 1e-06 9.4e-05 23.2 0.4 3 23 875 895 874 895 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.5e-05	0.0069	17.3	2.0	1	23	393	415	393	415	0.96
2	18	2.8e-05	0.0025	18.7	1.8	1	20	421	440	421	443	0.94
3	18	0.0003	0.027	15.5	1.7	1	23	449	471	449	471	0.98
4	18	0.00015	0.014	16.4	4.0	1	21	477	497	477	499	0.94
5	18	0.00014	0.013	16.5	4.7	1	23	505	527	505	527	0.99
6	18	2.6e-05	0.0024	18.8	5.3	1	23	533	555	533	555	0.97
7	18	4.9e-07	4.5e-05	24.2	5.0	1	23	561	583	561	583	0.98
8	18	1e-07	9.2e-06	26.4	2.7	1	23	589	611	589	611	0.98
9	18	7.4e-05	0.0068	17.3	6.7	1	23	617	639	617	639	0.97
10	18	4.4e-05	0.004	18.1	5.8	1	23	645	667	645	667	0.97
11	18	1.8e-06	0.00016	22.5	2.5	1	23	673	695	673	695	0.98
12	18	3.5e-05	0.0032	18.4	8.0	1	23	701	723	701	723	0.98
13	18	3.8e-05	0.0035	18.2	9.5	1	23	729	751	729	751	0.98
14	18	1.7e-05	0.0016	19.3	7.7	1	23	757	779	757	779	0.98
15	18	5.6e-05	0.0051	17.7	7.6	1	23	785	807	785	807	0.97
16	18	0.00017	0.016	16.2	0.2	1	23	813	835	813	835	0.97
17	18	0.13	12	7.1	4.0	1	23	845	867	845	867	0.98
18	18	1e-06	9.4e-05	23.2	0.4	3	23	875	895	874	895	0.99

Sequence Information

Coding Sequence: ATGAACAGCGATAATGAAAATGTCATATCAGAGGGACACAGTGCTTCAAATTCAGAAGCTACGCAAAGATCTTCTCAAGGTTCTGCCCTTCCTACTGATCTAAGAGTCAATACTACTGCTCTGAATGCAGTAGCACTCAGTAATGTTGCTAAATACTGGGTTCTAACTAATCTGTTACCTGGACCTATACCCCAAGTTTCAGTTTACGGCTTGCCAGGTAGTAGCAGAGATAGTCAAGGAAAAATCAGCCAGGATTCAATGCTAGGTCAACATGGCGGCCATCTGCAACCCGATCCGCTGTTGATCCAGCAACACTCTCAAGTTCCGGTTAGCCTAACTACAAGTCAGGCCGCCATTTTGGAAACCGCTCACATGTCCGACCAACATCAGACCGCCAACATGTCTTCCCAGAACCATGTGCAGAGAGAAGTGAGGATGGCCCACCAGCAGCAACCCCagcacaacaacaacaaccacgGAGGCCAACAGAACCTCGTGCAGGTCCAAGTGCAAGACAACATGGTGTCGGTCATCGAGGGCAACAAAGACCAGAAGGTCGACTTGTCGTCCTCTCAGATGCAAATCAACGAGAACCAGCTGAACCAGCAGGCGTTGACCGTCCAACAGCTGCAGCAGCTGCAGGTGCAACAAGTGCTGGAGAACGTGGTGAGTGGATGTTACGAGGCGCGAGCGTGGAACGAATTGTTTCCAACAAGTTATGACCTTCTGGACGTTTTCTTCACCCTTGGGAAAATCTCGTTCTACCTTTTCCAGAACAACAAACTCCTAGCAGGCGGGCAATTCGATTTGCAAGACGTTCGCGCCAACTTGATGGACGTGCGCACGGCAGACGGCAGCATCGTCAAGATACAGACGAACATGCAGGAGCAGGAAATCGTCAAGACTCTGGGCGTCGACATCGTCAACAACATGTACAAAGTCAACGTCGACGATCTCAATCAGCTGTTGGCGTACCACGAGATTTTCGGCAAGCTGCAGAGCAGTCAAGGTAACGAGGTGCCGTCGACGAGTCACAACGCGGGCCAACAGACCTCTGCGAACAATATCAATCTGTCGCATCTGTCGAACTCGCCGCACATCGAGATCATAACGAAAGACGAACAGGAGCCGTCTACCAGCAATTTGACAGGCGACGCCGTCCCCGTCCTAGGTACCCACGCGTGCGATTTGTGCGGCAAAATGTTCCAGTACCGGTATCAGCTGATCGTCCACCGGCGCTATCATACCGAGCGTAAGCCGTTCACGTGCCAGGTGTGCGGCAAAGCGTTCACGAACGCTCAGGAGCTGACGCGGCACGGCAAGTGTCATCTGGGCGGCAGCATGTTCACGTGCGCCGTGTGTTTCCACGTGTTCGCTAACGATTCGTCGCTCGATCGACACATGAAGCGACATTCGACCGACAAGCCGTACGCGTGCACTCTGTGCGGCAAAACGTTCGCCAGGAAGGAGCATCTGGATAATCATACGAGGTGTCACACGGGCGAGACGCCGTACAGGTGCCAGTTTTGCGCGAAGACTTTCACCAGAAAGGAGCACATGGTGAACCACGTGAGGAAACACACGGGAGAAACGCCGCACCGGTGCGAAATTTGCAAGAAATCCTTCACCAGGAAGGAGCACTTTATGAACCACGTGATGTGGCATACGGGGGAAACCCCGCATCAGTGTACGGTGTGCGGCAAAAAGTACACCAGGAAGGAGCATCTGGCCAATCACATGCGCAGTCACACGAACGACACTCCGTTCAGGTGCGAGATTTGCGGCAAATCCTTCACCAGAAAAGAGCATTTCACGAACCATATTATGTGGCATACAGGTGAGACTCCGCACAGGTGCGATTTCTGTTCGAAAACCTTTACGAGAAAGGAGCACCTGCTGAACCACGTGCGCCAACATACGGGCGAATCTCCGCATCGGTGCGGCTTTTGCTCGAAATCCTTCACGAGGAAAGAGCATCTCATCAACCACGTCAGGCAACACACAGGTGAGACGCCGTTCCGATGCGACTTCTGTCCTAAGGCGTTCACCAGGAAGGACCACCTGGTGAACCATGTGCGACAGCACACCGGCGAATCGCCGCACAAGTGCACGTTCTGCACCAAATCGTTCACGCGCAAAGAGCACCTGAACAATCACGTGCGACAGCACACCGGCGAATCGCCGCACAGGTGCCATTTTTGCACCAAGACGTTCACGCGCAAGGAGCATCTCACCAATCACGTGAGGATCCACACAGGCGAATCGCCGCACCGGTGCGAGTTCTGCCAGAAGACGTTCACCCGCAAAGAGCACCTGACGAACCACCTGCGCCAGCACACCGGCGAGACGCCGCACTGCTGCACGCTGTGCTCGAAGCCGTTCACTCGCAAAGAGCACCTCGTCAACCACATGCGGTCGCACACGGGCGAGCGGCCGTTCGCGTGCGGCGAGTGCGGCAAATCGTTCCCGCTCAAGGGCAACCTGCTGTTCCACCAGCGGTCGCACAACAAGGGCGCCGCGGCGGAGCGCCCGTTCCGGTGCGATCTCTGCGAGAAGGATTTCATGTGCAAGGGGCACTTGGTGTCGCACAGGCGGGCGCACACTGGCGAGAGGCCGCACGGCTGTCCGGATTGCGGTAAAACTTTCGTGGAAAAGGGCAACATGCTGCGTCACATGAAGAAGCACGCTGTCGCCGATCAAGTCGACAACAACGATCCCCAACAGCAAACGAACAATCAAGGCAACAACACCAACAACATCCAGATACCGCAAGTGCAGGTCAATACGGTGCAACAGCAACAACAGAACGGCCATTTGCAGATGGTGGTAGCGGGTGGGGCGAACAACAACGTGTTGACTTCGTATTGA
Protein Sequence: MNSDNENVISEGHSASNSEATQRSSQGSALPTDLRVNTTALNAVALSNVAKYWVLTNLLPGPIPQVSVYGLPGSSRDSQGKISQDSMLGQHGGHLQPDPLLIQQHSQVPVSLTTSQAAILETAHMSDQHQTANMSSQNHVQREVRMAHQQQPQHNNNNHGGQQNLVQVQVQDNMVSVIEGNKDQKVDLSSSQMQINENQLNQQALTVQQLQQLQVQQVLENVVSGCYEARAWNELFPTSYDLLDVFFTLGKISFYLFQNNKLLAGGQFDLQDVRANLMDVRTADGSIVKIQTNMQEQEIVKTLGVDIVNNMYKVNVDDLNQLLAYHEIFGKLQSSQGNEVPSTSHNAGQQTSANNINLSHLSNSPHIEIITKDEQEPSTSNLTGDAVPVLGTHACDLCGKMFQYRYQLIVHRRYHTERKPFTCQVCGKAFTNAQELTRHGKCHLGGSMFTCAVCFHVFANDSSLDRHMKRHSTDKPYACTLCGKTFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCDFCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLNNHVRQHTGESPHRCHFCTKTFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCTLCSKPFTRKEHLVNHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGAAAERPFRCDLCEKDFMCKGHLVSHRRAHTGERPHGCPDCGKTFVEKGNMLRHMKKHAVADQVDNNDPQQQTNNQGNNTNNIQIPQVQVNTVQQQQQNGHLQMVVAGGANNNVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00330895;
90% Identity: -
80% Identity: -