Basic Information

Insect: Chrysomela aeneicollis
Gene Symbol: -
Assembly: GCA_027562985.1
Location: JARUHR010000031.1:1111827-1129267[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00079 0.12 14.3 1.8 1 23 355 377 355 377 0.96

2 18 0.00017 0.026 16.4 2.1 1 20 383 402 383 405 0.93

3 18 5.8e-05 0.0089 17.9 1.6 1 23 411 433 411 433 0.98

4 18 0.00017 0.026 16.4 4.0 1 21 439 459 439 461 0.94

5 18 0.00016 0.024 16.5 4.7 1 23 467 489 467 489 0.99

6 18 3e-05 0.0045 18.8 5.3 1 23 495 517 495 517 0.97

7 18 5.5e-07 8.4e-05 24.3 5.0 1 23 523 545 523 545 0.98

8 18 1.1e-07 1.8e-05 26.4 2.7 1 23 551 573 551 573 0.98

9 18 8.5e-05 0.013 17.4 6.7 1 23 579 601 579 601 0.97

10 18 5e-05 0.0076 18.1 5.8 1 23 607 629 607 629 0.97

11 18 2e-06 0.00031 22.5 2.5 1 23 635 657 635 657 0.98

12 18 7.6e-06 0.0012 20.7 7.8 1 23 663 685 663 685 0.98

13 18 4.4e-05 0.0067 18.3 9.5 1 23 691 713 691 713 0.98

14 18 2.7e-05 0.0041 18.9 7.6 1 23 719 741 719 741 0.98

15 18 9.5e-05 0.014 17.2 6.5 1 23 747 769 747 769 0.96

16 18 0.00029 0.044 15.7 0.2 1 23 775 797 775 797 0.97

17 18 0.03 4.6 9.4 3.5 1 23 807 829 807 829 0.98

18 18 5.2e-07 7.9e-05 24.4 1.0 1 23 835 857 835 857 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00079	0.12	14.3	1.8	1	23	355	377	355	377	0.96
2	18	0.00017	0.026	16.4	2.1	1	20	383	402	383	405	0.93
3	18	5.8e-05	0.0089	17.9	1.6	1	23	411	433	411	433	0.98
4	18	0.00017	0.026	16.4	4.0	1	21	439	459	439	461	0.94
5	18	0.00016	0.024	16.5	4.7	1	23	467	489	467	489	0.99
6	18	3e-05	0.0045	18.8	5.3	1	23	495	517	495	517	0.97
7	18	5.5e-07	8.4e-05	24.3	5.0	1	23	523	545	523	545	0.98
8	18	1.1e-07	1.8e-05	26.4	2.7	1	23	551	573	551	573	0.98
9	18	8.5e-05	0.013	17.4	6.7	1	23	579	601	579	601	0.97
10	18	5e-05	0.0076	18.1	5.8	1	23	607	629	607	629	0.97
11	18	2e-06	0.00031	22.5	2.5	1	23	635	657	635	657	0.98
12	18	7.6e-06	0.0012	20.7	7.8	1	23	663	685	663	685	0.98
13	18	4.4e-05	0.0067	18.3	9.5	1	23	691	713	691	713	0.98
14	18	2.7e-05	0.0041	18.9	7.6	1	23	719	741	719	741	0.98
15	18	9.5e-05	0.014	17.2	6.5	1	23	747	769	747	769	0.96
16	18	0.00029	0.044	15.7	0.2	1	23	775	797	775	797	0.97
17	18	0.03	4.6	9.4	3.5	1	23	807	829	807	829	0.98
18	18	5.2e-07	7.9e-05	24.4	1.0	1	23	835	857	835	857	0.96

Sequence Information

Coding Sequence: ATGAACAGCGATAACCAAAATGTTCTATCAGCGGGACATGGTGCTTCAAACTCGGAGGCTTCTCAGAGATCACCACAAAGTTCTGCCCTACCAACAGATCTAAGAGTGAATACCACTGCTCTGAATGCAGTTGCTCTCAGTAATGTGGCTAAATATTGGGTTCTGACCAATTTGTTACCTGGACCCATACCCCAAGTGTCAGTTTACGGATTGCCAGGAACAAACAGGGATAGCCAAGGAAAAATTAGCCAGGATTCAATGCTAGGTCAACATGGCGGCCATCTGCAATCGGACCCCATGTTGATTCAGCAGCACCCGGTCAGCCAAGGCAGCTTGGGCGCCATTTTGGACAACGGCCAGCACCAGGGCGTATCCATGTCGTCGCAGAACCAGAGTCACATACAGAGAGAGGCTAGGATGGCGCACCAGCAACAACCTCAAAACGCACCGCACAACGGCCATGGACAACAACAAAGCATGGTCCAGGTGCAGGTCCAAGACAACATGGTGTCAGTCATTGAGGGCGCCAAGGACCAGCAGAAGGAAATCACCGCCGCCCACATGCAGGCGGCGCAGCTGCAGCTCACCGAGAACCACATCAACCAGCAGGCCCTGACCGTCCAGCAGCTGCAACAGCTGCAGGTGCAGCAGGTGTTGGACAATGTGAACAGCAAATTGCTCGCTGGGGGTCAGTTCGACCTGCAGGACGTCAGGGCCAACTTGATGGACGTGCGTACGGCTGACGGCAGCATCGTCAAGATCCAGACCAACATGCAGGAGCAGGAGATCGTCAAGACTTTGGGCGTGGACATAGTCAATAACATGTACAAGGTCAACGTCGACGATCTGAATCAGCTGTTGGCCTACCACGAGATATTTGGCAAGCTGCAAAGCAACCAAGGAGCCGACGTCCCTTCGACCAGCAGCCACAACGCCGCCCAACAACAGCCGCCTCCGGCCCCCAATCTCCCCAACCCCACCAACATGTCGATCGTGGCAAAGGACGAGCAGGAACCCTCAACCAGCACCCTCGAaggcggcgacgcccccatgaCGGGCACTCACGCTTGCGATCTCTGCGGCAAACTTTTCCAATACCGCTACCAGCTGATCGTCCACCGACGCTACCACACCGAGCGCAAACCCCACACGTGCCAGGTGTGCGGCAAAGCGTTCGCCAACGCCCAGGAGCTCACACGCCACGGCAAGTGCCACCTGGGCGGCAGCATGTTCACGTGCGCCGTGTGCTTTCACGTGTTCGCCAACGATTCGTCGCTGGAGCGACACATGAAGCGTCACTCCACCGACAAGCCGTACGCGTGCACGCTATGCGGCAAAACGTTCGCACGCAAAGAGCACCTCGACAATCACACGCGGTGTCACACGGGGGAGACGCCCTACCGGTGTCAGTTTTGCGCCAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGGGAAACCCCGCACCGGTGCGAGATCTGCAAGAAATCGTTCACGCGCAAAGAGCACTTCATGAACCACGTGATGTGGCACACGGGGGAAACGCCGCACCAGTGCACCGTGTGCGGGAAAAAGTACACGCGCAAAGAGCACCTGGCAAATCACATGCGCAGTCACACCAACGACACGCCGTTTCGGTGTGAGATTTGCGGCAAGTCGTTTACGCGCAAAGAGCACTTTACGAATCACATTATGTGGCATACGGGGGAGACGCCGCACCGGTGTGATTTCTGCTCGAAGACGTTCACGAGGAAGGAGCACCTGCTGAATCACGTGCGGCAGCACACGGGAGAGTCGCCGCACCGGTGCGGGTTCTGCTCCAAGTCGTTCACGAGGAAGGAGCACTTGATCAATCACGTGAGGCAGCACACAGGAGAGACGCCGTTCAGATGCGACTTTTGCCCGAAAGCGTTCACCAGAAAGGACCACCTGGTGAACCACGTGCGGCAACATACGGGGGAGTCGCCGCACAAGTGCACCTATTGCACCAAATCGTTCACGCGCAAAGAGCACCTCAACAATCACGTGCGACAACACACAGGGGAGTCGCCGCACAGGTGCCATTTCTGTACGAAGACGTTCACAAGGAAGGAGCACCTCACCAACCACGTTAGGATACACACAGGCGAATCGCCGCACCGTTGCGAGTTCTGCTCGAAGACGTTCACGCGCAAAGAGCACCTGACCAACCACCTGCGCCAGCACACCGGCGAAACGCCGCACTGCTGCGCCCTCTGCTCCAAACCGTTCACGCGCAAGGAGCACCTCGTCAATCACATGCGCAGTCACACCGGCGAGCGGCCGTTCGCTTGCGCAGAATGCGGCAAGTCGTTCCCGCTCAAGGGCAACCTGCTGTTCCACCAGCGGTCGCACAACAAGGGCGCCGCGGCGGACCGGCCGTTCCGGTGCGATTTGTGCGAAAAGGATTTCGTGTGCAAGGGGCACCTGGTGAGCCATCGGAGGGCGCATGTGGGGGACCGGCCGCACGCTTGTCCCGATTGCGGCAAAACCTTCGTCGAAAAAGGCAACATGCTGCGCCACATGAAGAAGCACTCCGCCGACCAGCCGGGCAACAACAACAACCAACAGCAGCAGCAACAATCGAACAATCAGTCGGGCAACgccaacaacaacaacaacatccAAATCCCGCAGGTGCAGGTGAACTCGGTGCAGCAGCAGCAAAACGCGGGGCAACCGGCGCACCTGCAAATGCACCAGCCGGTTGTTGTGGCGAGTGGTGCGAATCCCAACGTGTTGACCTCTTATTGA
Protein Sequence: MNSDNQNVLSAGHGASNSEASQRSPQSSALPTDLRVNTTALNAVALSNVAKYWVLTNLLPGPIPQVSVYGLPGTNRDSQGKISQDSMLGQHGGHLQSDPMLIQQHPVSQGSLGAILDNGQHQGVSMSSQNQSHIQREARMAHQQQPQNAPHNGHGQQQSMVQVQVQDNMVSVIEGAKDQQKEITAAHMQAAQLQLTENHINQQALTVQQLQQLQVQQVLDNVNSKLLAGGQFDLQDVRANLMDVRTADGSIVKIQTNMQEQEIVKTLGVDIVNNMYKVNVDDLNQLLAYHEIFGKLQSNQGADVPSTSSHNAAQQQPPPAPNLPNPTNMSIVAKDEQEPSTSTLEGGDAPMTGTHACDLCGKLFQYRYQLIVHRRYHTERKPHTCQVCGKAFANAQELTRHGKCHLGGSMFTCAVCFHVFANDSSLERHMKRHSTDKPYACTLCGKTFARKEHLDNHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCTVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCDFCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLNNHVRQHTGESPHRCHFCTKTFTRKEHLTNHVRIHTGESPHRCEFCSKTFTRKEHLTNHLRQHTGETPHCCALCSKPFTRKEHLVNHMRSHTGERPFACAECGKSFPLKGNLLFHQRSHNKGAAADRPFRCDLCEKDFVCKGHLVSHRRAHVGDRPHACPDCGKTFVEKGNMLRHMKKHSADQPGNNNNQQQQQQSNNQSGNANNNNNIQIPQVQVNSVQQQQNAGQPAHLQMHQPVVVASGANPNVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00740202;
90% Identity: -
80% Identity: -