Gpol011794.1
Basic Information
- Insect
- Gastrophysa polygoni
- Gene Symbol
- -
- Assembly
- GCA_963576655.1
- Location
- OY755086.1:4592617-4607288[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-11 1.2e-08 35.1 0.0 1 39 313 352 313 356 0.90 2 4 3.8e-13 3.1e-10 40.1 0.1 1 39 367 405 367 408 0.95 3 4 6.3e-19 5.1e-16 58.7 0.0 1 45 422 467 422 467 0.98 4 4 0.057 46 4.4 0.0 1 13 474 486 474 487 0.92
Sequence Information
- Coding Sequence
- ATGGCTATAACTAATGAAGACATTAGCATCATTGAATATCCAATTCATTATCTAGTAAAGATCACTTTACCGAAACATTGCCACAGAATAACTCTTGTGGATAAGTCTCTGCTACGAACGGCGGACCAATTAAAGATCAAAGGCTTGTGCGAATCTCCCGACGACAAAGAACACCCTGAACTACCTCTGTCGCTCGATTGCAATCGTGCCAGGAAATCTACGGCGAGCAGCGTGCAGATCAAGTTGCAGGAGAACAATACCGCTCAGAACAACCAGAAGCCCTCCTCTAGTAAGGAGCATTCCCCGACCTCTAATGAACCAGAAGCCGGATCCAGAGCAGAGGACGACAGCACGGAACGACCGCCCGAGATCGAAGAGGATGACATGCCAATAGCTTTGAATGACAGGAAGAGGAAAAGGCCCGCCCCGCCAGAACAGACTACCCCACTAAACATGAGCAGCCATGGCCTCCTCTCCGGACAGACGATCTTCTCGCAGTTCGGCGTCGACACGGACGACTTCCCGCCCGAGCCGGCCGCCCCTTCGGCAATCCCCGTCGGCCACGTGGACATGTCCACGGCCCCCCACGACCACCCCTCGCCCACGCGCACCCTCCTCACCGCCCCCGCCAAGTACGCGCTCGACATCAAGAAGGAAGCCGACATCAAGTTCGAAACGTTGCGCTCCTACGACCAGGATAGCCTGTTGGACATGGAGTCCCATATGTCTGGGCCTGACCACTCGATGGACAGCCACGATGATGGTGACAGGAGTATGCACCAAGGAATGATGGGTCATGGAGATTTTGTCGGACTTCTGCCTTTGGTGTCGAATAAATTAGATGTAAATAGTGAAGAGTCTATATCTGGAATGGATGGCCATGGAGACAATTTATTAACACCACGGACGCATACAGGGGGTGGACCGAAAACATGGACTCAGGAAGATATGGACATGGCTTTAGATGCCTTACGAAACCATAATATGAGCCTCACGAAGGCATCAGCAACTTATGGTATTCCCTCCACTACTTTATGGCAAAGAGCACATAGACTAGGAATAGACACACCAAAAAAAGAAGGGCCCACCAAATCCTGGACCGAAGAGAATCTGAATAACGCATTGGAAGCGTTAAGGACTGGCACGATATCAGCGAATAAGGCCAGTAAAGCATATGGCATCCCCAGCAGCACTCTGTACAAGATCGCGCGCCGCGAGGGCATCCGACTGGCGGCGCCGTTCAACGCCGCACCCACCGCCTGGACGCCCGAGGACCTCGAGAAGGCGCTCGAGTCGATCCGCTCGGGGCAGACGTCGGTGCAGAAGGCCTCCACGGAGTTCGGCATCCCGACGGGCACGCTGTACGGCCGGTGCAAGCGCGAGGGCATCGAGCTGTCGCGCTCGAATCCGACGCCGTGGTCGGAGGACGCGATGGGCGAGGCGCTCGAGGCTGTGAGGTACTGA
- Protein Sequence
- MAITNEDISIIEYPIHYLVKITLPKHCHRITLVDKSLLRTADQLKIKGLCESPDDKEHPELPLSLDCNRARKSTASSVQIKLQENNTAQNNQKPSSSKEHSPTSNEPEAGSRAEDDSTERPPEIEEDDMPIALNDRKRKRPAPPEQTTPLNMSSHGLLSGQTIFSQFGVDTDDFPPEPAAPSAIPVGHVDMSTAPHDHPSPTRTLLTAPAKYALDIKKEADIKFETLRSYDQDSLLDMESHMSGPDHSMDSHDDGDRSMHQGMMGHGDFVGLLPLVSNKLDVNSEESISGMDGHGDNLLTPRTHTGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWTPEDLEKALESIRSGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00330450;
- 90% Identity
- -
- 80% Identity
- -