Caen011690.1
Basic Information
- Insect
- Chrysomela aeneicollis
- Gene Symbol
- -
- Assembly
- GCA_027562985.1
- Location
- JARUHR010000008.1:5581356-5599681[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-11 1.9e-08 35.3 0.0 1 39 309 348 309 352 0.90 2 4 1.2e-12 6e-10 40.2 0.1 1 39 363 401 363 404 0.95 3 4 3.6e-18 1.8e-15 57.8 0.0 1 45 418 463 418 463 0.98 4 4 0.18 88 4.4 0.0 1 13 470 482 470 483 0.92
Sequence Information
- Coding Sequence
- ATGGCGCCTCCCTTCCCTCTCGTAATTTCCGTGGCTGCACCAAGCTGCACGAAGCAGTCACTGCTGCGAACGGCGGATCAATTAAAGATCAAAGGCTTGTGCGAATCGCCAGACGACAAAGACCATCCAGAGCCAACTCTACCGCTCGATCGCAAACGCGCCAGGAAATCGGCAAGCGACGTTCAGATCAAGTTGCAGGACAATAACATCTCCGGGAAGCCGTCACCATCTGAAGAACGCCGCGCCACCTCTAATGACCCACGACCCGGAAGTGGGACAAAGGAGGACAGCAAGCAGCCAGCGGACGAGGAGGATGACATGCCAATAGCTTTGGATGACAGGAAGAGGAAAAGGCCGGCCCCGCCAGAACAGACAACGCCGCTAAACATGAGCAGCCATGGCCTACTATCCGGGCAGACGATCTTCTCGCAGTTCGGCGTCGACACGGACGACTTCCCGCCGGAGCCTGCGGCGCCTTCGGCCATTCCCGTCGGTCACGTGGACATGCCGTCGATGACGCACGACGACCACCCCTCGCCTACGCGCACCCTCCTCACCGCCGCCGccccctcctcctcctcctccacTGTCCTCCACCGCATTGACATCTCCGACTCGGCGAGGTTCGCGATCGACGTCAAGAAGGAGGCCGATGTCAAGTTCGAGACGCTGCGGTCGTACGACCAGGACAGTCTATTAGATATGGAGTCCCACATGTCTGGACCTGACCACTCGATGGATAGTCACGATGATGGTGACAGGAGTATGCATCCAGGAATGATGGGTCATGGTGACTTTGGAGGTCTTCTGCCTAGTGTCTCGAGTAGATTGGATTTAAATTGTGAAGAATCTGTACCTGGAATGAATGGCCATGGCGAAGTACAAACATCACGGACCCATACAGGAGGTGGACCAAAAACTTGGACTCAGGATGATATGGACATGGCTTTAGATGCCTTAAGAAATCACAATATGAGCCTCACGAAGGCATCAGCAACTTATGGTATTCCCTCCACTACTTTATGGCAAAGAGCGCATAGGCTAGGAATAGACACACCAAAAAAAGAAGGGCCCACCAAATCATGGACTGAGGAGAATCTAAACAATGCTCTGGAAGCATTGAGGACTGGTACAATATCTGCGAATAAAGCTAGTAAAGCATACGGCATCCCCAGCAGCACGCTGTACAAGATAGCGCGCCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCACCACATGGACGCCCGATGACCTCGAGAAGGCGCTCGAGTCGATCCGCACGGGCCAGACGTCGGTGCAGAAGGCGTCCACGGAGTTCGGCATACCGACGGGCACGCTGTACGGTCGGTGCAAGCGCGAGGGCATCGAGTTGTCCAGGTCGAACCCGACGCCGTGGTCGGAGGACGCTATGGGGGAGGCCCTGGAGGCTGTGAGGTACTGA
- Protein Sequence
- MAPPFPLVISVAAPSCTKQSLLRTADQLKIKGLCESPDDKDHPEPTLPLDRKRARKSASDVQIKLQDNNISGKPSPSEERRATSNDPRPGSGTKEDSKQPADEEDDMPIALDDRKRKRPAPPEQTTPLNMSSHGLLSGQTIFSQFGVDTDDFPPEPAAPSAIPVGHVDMPSMTHDDHPSPTRTLLTAAAPSSSSSTVLHRIDISDSARFAIDVKKEADVKFETLRSYDQDSLLDMESHMSGPDHSMDSHDDGDRSMHPGMMGHGDFGGLLPSVSSRLDLNCEESVPGMNGHGEVQTSRTHTGGGPKTWTQDDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00739860;
- 90% Identity
- -
- 80% Identity
- -