Basic Information

Insect: Gastracanthus pulcherrimus
Gene Symbol: prdm10
Assembly: GCA_949152435.1
Location: OX424575.1:181025769-181032017[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.01 3.1 10.8 5.5 1 23 611 633 611 633 0.91

2 9 0.00047 0.14 15.0 1.5 2 23 642 663 641 663 0.97

3 9 9.6 2.8e+03 1.5 0.0 2 12 671 681 670 686 0.83

4 9 0.00027 0.079 15.8 3.6 1 23 699 721 699 722 0.95

5 9 0.019 5.6 10.0 4.9 1 23 727 749 727 749 0.97

6 9 1.2e-05 0.0036 20.0 1.5 1 23 755 778 755 778 0.96

7 9 0.0025 0.74 12.7 1.0 1 23 812 835 812 835 0.97

8 9 5.6e-05 0.016 17.9 2.4 1 23 857 880 857 880 0.97

9 9 0.0057 1.7 11.6 3.4 3 23 918 939 918 939 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.01	3.1	10.8	5.5	1	23	611	633	611	633	0.91
2	9	0.00047	0.14	15.0	1.5	2	23	642	663	641	663	0.97
3	9	9.6	2.8e+03	1.5	0.0	2	12	671	681	670	686	0.83
4	9	0.00027	0.079	15.8	3.6	1	23	699	721	699	722	0.95
5	9	0.019	5.6	10.0	4.9	1	23	727	749	727	749	0.97
6	9	1.2e-05	0.0036	20.0	1.5	1	23	755	778	755	778	0.96
7	9	0.0025	0.74	12.7	1.0	1	23	812	835	812	835	0.97
8	9	5.6e-05	0.016	17.9	2.4	1	23	857	880	857	880	0.97
9	9	0.0057	1.7	11.6	3.4	3	23	918	939	918	939	0.98

Sequence Information

Coding Sequence: ATGGACCAAAGGGGCCCTCCTGAGGGGGCCCCTGTTGTCATCGCTGACCCCATGGACATGACTATCATTGACAAAGTCTGCAGTGAGACGAATTGGCCTGACGACAACATTGTATCTTCCTCAACGTTCTGTGATCATCCAAGGAAACTTAACAACAAACTCCTATTTCTGACGGTGGAATATGTTGAAGATCAGGCAAGAGATTTTGGTCGCATGTATCCATCATATGAACAAGTCTCCTTTTCATCTAGAGCAAATTCTCCTTTGTCGGACTTTGAACACCGTGTCAGTCCTCATGATCCAAATATGAGTTCTGCTGCAAGATATTCTCCTACTCCAGTTCCTCTGCCTTCCTCACCATTTAACAATTCGGTGGTTGTCCTTCAAGAACCTTCTTCGCCTCTTATATCAACATCAGAATCCGCTGTGCGAATCACTAATGGATATTCATCTCAACTTACTGACCAGTCATCTAATCCCAGTATGTCTCAAAGTGATAATTCTGAAGATTTTACTGACAGTACAAGTGATGGACTAGTATCAAGTGTTGGAAATGAATTAATGCTTATACAAGGTTCAAATTCTGAGCTGGAGCCTTCTTCTGCTCCACTTATGTTAGCAGGAATACCAGGATCTGATTTAGCTCTTACAAGAGATTTTCTTGTCATGCAAGAAGATCAAATTAATGTCATAAATTCTATGAAACTTAATTCGAATCTAGAACACAATGTCAGTCAGGTCACAGAAAGCATCTTACCACATGATATTGATGAAGAAACTAACGCACAAATATCAAcaatgaaaagttataaaaaatttattgaacaaacaAATCCGATTTTGGATTcagataaaaaagatattcaatGGTCTAAGGATCAAACcattgaagataataatagCCTATGGTATGAAGACTGTGATAGCACTTGTACAGATGTGGCAGATTGTACTTTACATAGTGTGTGCACTATTGCTGATCAACCAGTTCCTTCTAGAGCAGTTGCAACATTACCAGGCCTCTATTTATCAATTGATAAACTTCCTTCTTCTGAAATCACTACTGGATCAGCAGAATTTGgtgtttttgcaaaaaaaaatattcgtcgTCGAACTCAGTTTGGTCCAATAGAAGGAATTCTACTACACTCTTATGATGGATCACTCATTGAAGGTTTACCATTGTTGTTAGAAACCAAAGAAGAGGGTGAATTTTTAAGAGTTGATGTTTCAGACGAAAATTCCTCGAATTGGATGCGTTTTGTCAGACCTGCTCGGACTTATGAAGAACAAAATTTAGTGATAAGTCAACAGAATGATGGAATAATATTCCTTACCACTCGGAATATAATGCCTAATGAGGAATTGAAGGCTGGTCCTAGTCTTGAATATGGTAAACGCAGGAATTTACCAGTACTTGaagttatacataaaaacaatttagATTCAAACATAGAATTCTGCACTCAGTCACATATAAAGACTGGTCCACTTGAAATTGCTGATGAAAAGGTGAACAAAACTTCATTTACCGAAAATTTCCGAAGTAATtctacaaaattacaaaagaaacgCAAAGCTACTCGTACCTCAATACAaaaatatctaGAAGTCCATGAAAACAAAGATAATGATTTAagtgattcaaaaacttttaaaaatgatagTGAACAATTGTTTAACCATAAAGAATCACCGAAATCACAtcaagaagagaaagaaaaagaaaattctccGGATATTAAACTAGAATTAATGAAACAAGAAGTGACACAATCTGATCAAACCGACATTTCAGAGAAAACTACGAACGTTGTTTCGTCTAGCGTTTACAAGTGTACAATATGCTCAAAACGTTTTtcgacaaaattgaaatttcaacaGCACTGCCTAGTACATGGTGTCAAAGATAACGAATCTCTTTCATGCAACGTTTGCTTAAAGACATTTTTGAACAATTCCTCTCTATCTCGTCATTTGAAAACACATCAAAaaGAAAGACAAACTCTTGAGTGCCCAGTATGCAGAGAAGCATTTGGTCGCGTTTTGACATTAAAGGATTTTTCAGAAACGCATCTCAATCAATACGAAACATTCACTTGTCCTCACTGCCCAAAATCATTTAACAGTTACGCTTTGACTCGGAAACACGCGAGAGCACACCATTTTGATCGGAAACACGAATGTCAACATTGCTTGAAATGTTTTCCCGCTGCAGACAAATTGAGAATGCATTTATTACGGCACTCCGATCGCAGGGAATTTCAATGTGCAAATTGTGGAAAACAGTTTAAACGAAAGGACAAACTTAAAGATCACGTAACTCGTGTACACTATACGCAAAAGACTAACAAGGACCAAATATCATCAAATAATCGTGCCAAAAAAGTTATTCCAAAGCAAACAAATCCAGTAGATTGTGACcgttttatttacaaatgtcGTCGTTGCCAAGTGGGTTTTAAGCGTAGGGGTATGCTCGTCAATCACCTAGCCAAGCGACATCCAGATGTACCTCCCGAGTCTGTACCAGAGCTTAGTTTGCCAATTTTACGACAAACGAGAGATTATTATTGTCAATACTGCGacaaaGTTTACAAAAGTAGCAGCAAGCGAAAAGCGCACATCATGAAAAACCATCCAGGTGCAGCCTTGCCACCAAGCAATAGAAATAAGGAATTTGATATTCCTGGATTACCCAATCCGACATTCAGTCAGGCTGCTGGCAGTATTAAAACTGCTCCACAGGGTTGCCAATGGTGCCACAAACAATATGCTAGTAAAGCAAAACTCCTGCAGCATCAGCGCAAAAAGCACTCCAGCCTGATGGAGCCCGCCGACCAGATACCCCGCCCACGAAGCCGTCCGCCCCAGAATCAAAACCAACCGCCGACCTCGAGCACCACCACCATCAGCAAGCAacccaacaacaacaacaacgcgATCAACGAGATCTGCATCGAGGAGCcggacgacgacgaggacgaggacgacgaccTGGAGCCGGAATTCCTCAAGCCGCGCATCGTCCGGATAAGCGGCGCCGGCGGCGAGTCCATATCCGTCGGCAACGACAGCAGCCACACCAGCAGCGGCGCCGGCAACGGATTCGAACTACTCGCCGGCAGTGCGCAGCAGTTCGCCCGCGTGCGCGACATGCGCTGA
Protein Sequence: MDQRGPPEGAPVVIADPMDMTIIDKVCSETNWPDDNIVSSSTFCDHPRKLNNKLLFLTVEYVEDQARDFGRMYPSYEQVSFSSRANSPLSDFEHRVSPHDPNMSSAARYSPTPVPLPSSPFNNSVVVLQEPSSPLISTSESAVRITNGYSSQLTDQSSNPSMSQSDNSEDFTDSTSDGLVSSVGNELMLIQGSNSELEPSSAPLMLAGIPGSDLALTRDFLVMQEDQINVINSMKLNSNLEHNVSQVTESILPHDIDEETNAQISTMKSYKKFIEQTNPILDSDKKDIQWSKDQTIEDNNSLWYEDCDSTCTDVADCTLHSVCTIADQPVPSRAVATLPGLYLSIDKLPSSEITTGSAEFGVFAKKNIRRRTQFGPIEGILLHSYDGSLIEGLPLLLETKEEGEFLRVDVSDENSSNWMRFVRPARTYEEQNLVISQQNDGIIFLTTRNIMPNEELKAGPSLEYGKRRNLPVLEVIHKNNLDSNIEFCTQSHIKTGPLEIADEKVNKTSFTENFRSNSTKLQKKRKATRTSIQKYLEVHENKDNDLSDSKTFKNDSEQLFNHKESPKSHQEEKEKENSPDIKLELMKQEVTQSDQTDISEKTTNVVSSSVYKCTICSKRFSTKLKFQQHCLVHGVKDNESLSCNVCLKTFLNNSSLSRHLKTHQKERQTLECPVCREAFGRVLTLKDFSETHLNQYETFTCPHCPKSFNSYALTRKHARAHHFDRKHECQHCLKCFPAADKLRMHLLRHSDRREFQCANCGKQFKRKDKLKDHVTRVHYTQKTNKDQISSNNRAKKVIPKQTNPVDCDRFIYKCRRCQVGFKRRGMLVNHLAKRHPDVPPESVPELSLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRNKEFDIPGLPNPTFSQAAGSIKTAPQGCQWCHKQYASKAKLLQHQRKKHSSLMEPADQIPRPRSRPPQNQNQPPTSSTTTISKQPNNNNNAINEICIEEPDDDEDEDDDLEPEFLKPRIVRISGAGGESISVGNDSSHTSSGAGNGFELLAGSAQQFARVRDMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00309747;
90% Identity: -
80% Identity: -