Basic Information

Insect: Gastracanthus pulcherrimus
Gene Symbol: -
Assembly: GCA_949152435.1
Location: OX424572.1:89111512-89113584[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0034 0.99 12.3 1.2 1 23 285 308 285 308 0.96

2 10 8.9e-06 0.0026 20.4 0.5 1 23 314 336 314 336 0.99

3 10 1.7e-07 5e-05 25.9 0.3 1 23 342 364 342 364 0.99

4 10 0.049 15 8.7 0.7 1 23 370 392 370 392 0.98

5 10 7.6e-06 0.0022 20.7 0.2 1 20 398 417 398 418 0.96

6 10 0.043 13 8.9 2.4 1 23 427 447 427 447 0.94

7 10 1.9e-06 0.00055 22.6 0.5 3 23 455 475 454 475 0.98

8 10 0.00019 0.055 16.3 1.4 1 23 481 503 481 503 0.98

9 10 0.0036 1.1 12.2 2.6 1 21 509 529 509 532 0.96

10 10 1 3e+02 4.5 1.9 1 20 538 557 538 559 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0034	0.99	12.3	1.2	1	23	285	308	285	308	0.96
2	10	8.9e-06	0.0026	20.4	0.5	1	23	314	336	314	336	0.99
3	10	1.7e-07	5e-05	25.9	0.3	1	23	342	364	342	364	0.99
4	10	0.049	15	8.7	0.7	1	23	370	392	370	392	0.98
5	10	7.6e-06	0.0022	20.7	0.2	1	20	398	417	398	418	0.96
6	10	0.043	13	8.9	2.4	1	23	427	447	427	447	0.94
7	10	1.9e-06	0.00055	22.6	0.5	3	23	455	475	454	475	0.98
8	10	0.00019	0.055	16.3	1.4	1	23	481	503	481	503	0.98
9	10	0.0036	1.1	12.2	2.6	1	21	509	529	509	532	0.96
10	10	1	3e+02	4.5	1.9	1	20	538	557	538	559	0.93

Sequence Information

Coding Sequence: ATGACGAACACGCAGCAGACGATTCTGGAGCCGGCGGTGGAGCAGCCGCACGAAGAGGTCCAGCTAACCGAACTCAAGCCGGTCGAGCAGTCCTGGATCAAGGAGAGCGACGACAAAGACGGGAATGCCACCGACGGTCTCAAAGCCCTACGGAGCTTCTCACGCAGACAGGTCGACGAGTTCGAGCACTTCGGCGCCGGCTACCCGAGAAAGAGGAAAGCCGAGCGATGGAAGCATATTGACGCCACCAACGAGTTCGGGATCGACAGCGACGACGAGCACTTCGTCAAAAAGGCGCACAAGACTCGAGTCGCCGGCAGCAAGAAGAACGAGGGCTTCAACGACGCGGTGCCAAGCGACGAGTTCGACGAGGACGACGTCGAGTTCTACGGTGTGAACGGGGACTTCGAGTACCTGGAGGAGCGGAACGACGACGAGATCTACGTGTACCGGCAGCGTGACTCCTGCTCCAGTCCGGAGGTCGAGGATCACATACAGACCATCAAGGAGATCGAGAAAATCGAGGACGTGATCGAGAAGGTCAAGGTCGAGAAGCCACGCAAGGTCGAGGCCAAGCCCGTCCCGGCGCCTCGACCCCGAGGCCGACCCCGCAAGAAGAGACGAAACGCGACGCCAGCGAAGGCCAAGGAGCCCGAACCCGAACCAGAACCCGAACCGATCCTCGAGTCTCCGGAGACCTCGGAGAAGGAGCTCCAGAGCAAGATCAACGACATAATCCAGGCGAACTACCTGCTGGAGCAGGAGAACAACAACATCGTGGAGAATGGCCACGACAAGGTCGAGGAGGAAGCGGGCTCTCTGAACAACGACACCGAGGACTCGCCGAAGAAGTACTGCTGCGGCCTGTGCAAGGCGCGCTTCAAGGGCAGCGGGGGGCTGCGCAACCACTACAAGGTCGTGCACGCGACTGGGCCCCTCTTCAAGTGCGACGAGTGCGGCAAGGAGTTCCCCCTGAAGGAGCGGCTCAAGCTGCACGTGCGCACCCACACGGGCTTCAAGCCCTACAAGTGCCCCGAGTGCGACAAGAGCTTCGCCCGGGGCGGCCAGCTAGTCCAACATCGGCGTACCCACAGCCAGGTCAAGCCCTACAGCTGCGAGCTCTGCTCGGGCACCTTCACCTGCGCCGCCAATCTGGCCCTGCACGTCAAGCGCCACAACGGTCAGAAGGATCACAAGTGCGACATATGCGGCAGGGGATTCGTGCGCCGCGACGCCCTGAAGAAGCATCTGGAGTGCCTGCACCGAGACGTCAAGTCCTTCCTCTGCGTCATCTGCAACAAGACGTTCAAGGGTCATCTGCCCCAGCACATGCGGACCCACGCTCAGGACAGGCCACACGGCTGCGCCACTTGTGGCCAGAGGTTCGCTCAGAAGAGTCAGCTGACCGTGCACCAGAGGACGCACTCGGGCCAGAGGCCCTTCAGGTGCCTCGTCTGCTGGCAGGCCTTTGCCCATTCGACCGCTCTTAAGCTTCACACCAGGAGACACACCGGGGAAAGGCCTTTCAAGTGTGCCGAGTGCAACGCAGGTTTCACCCAGTTGCCCCACTGGAAGAAGCACATGAAGTGCATCCACGGCAGGAGCGAGCCGTACTGCTGTCGGCGCTGCAACAGCTTCTTCCGCATCAAGAACGACCTGGAGGCCCACGAGAAGGACTGCCAGGCCGAGTCCAACGAGTCCGCGGGCTCGGACCCGGGTAACTCCAGGGATGGCCAGGACGGCATGTCGGCCAGCGCCCTGGCCAGGTTCCGGAACATGTCCATCGAGAAGATGAGGCTGCTGCTGGCCGTGCTGCTCAAGAGGATCTCCAAGCAGGAGAGGCTGGACGAGCTGGGCTTCGGTAAACGACTCATCGACGAGGTGCTCGTCGACTCGCTAGTTTCCGCCGGCAAGGAAGCGGTGAAGGTCAATGGGGTCACGCCGGAATTCGATGCGCTCAGGAGGAATCTCGAGGTGTTCCTGGAGTGGACAGTGCCCAAGGAGCACTGGGAGAATTTCCGGAAGATGAACAAGACGCCGGAGGAAGTGCTCGAGACCCTCACCGCGTCGTAA
Protein Sequence: MTNTQQTILEPAVEQPHEEVQLTELKPVEQSWIKESDDKDGNATDGLKALRSFSRRQVDEFEHFGAGYPRKRKAERWKHIDATNEFGIDSDDEHFVKKAHKTRVAGSKKNEGFNDAVPSDEFDEDDVEFYGVNGDFEYLEERNDDEIYVYRQRDSCSSPEVEDHIQTIKEIEKIEDVIEKVKVEKPRKVEAKPVPAPRPRGRPRKKRRNATPAKAKEPEPEPEPEPILESPETSEKELQSKINDIIQANYLLEQENNNIVENGHDKVEEEAGSLNNDTEDSPKKYCCGLCKARFKGSGGLRNHYKVVHATGPLFKCDECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQVKPYSCELCSGTFTCAANLALHVKRHNGQKDHKCDICGRGFVRRDALKKHLECLHRDVKSFLCVICNKTFKGHLPQHMRTHAQDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMKCIHGRSEPYCCRRCNSFFRIKNDLEAHEKDCQAESNESAGSDPGNSRDGQDGMSASALARFRNMSIEKMRLLLAVLLKRISKQERLDELGFGKRLIDEVLVDSLVSAGKEAVKVNGVTPEFDALRRNLEVFLEWTVPKEHWENFRKMNKTPEEVLETLTAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00286665;
90% Identity: -
80% Identity: -