Gpyr010342.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401878.1:4722581-4726334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.011 0.61 10.9 1.3 1 23 153 175 153 175 0.99 2 11 6.2 3.6e+02 2.2 0.8 3 21 183 201 182 202 0.90 3 11 0.0029 0.17 12.6 0.1 3 21 205 223 204 224 0.94 4 11 2.3 1.4e+02 3.5 0.3 3 23 312 334 311 335 0.89 5 11 0.00053 0.031 14.9 0.2 1 20 335 354 335 356 0.92 6 11 0.0029 0.17 12.6 0.2 2 23 374 395 373 395 0.97 7 11 0.00016 0.0095 16.5 2.0 1 23 402 424 402 424 0.97 8 11 0.0027 0.16 12.7 1.4 3 23 432 452 431 452 0.98 9 11 0.00029 0.017 15.8 0.7 1 23 458 480 458 480 0.98 10 11 0.0037 0.21 12.3 5.3 1 23 486 508 486 508 0.95 11 11 0.085 4.9 8.0 6.3 1 23 514 537 514 537 0.98
Sequence Information
- Coding Sequence
- ATGCTACCTAACACCGTATGCATCACCTGCTATAACCTCCTTGTGGTTTCTTACAAGTTCTTTGTGAAGATCAAGAGGTCTCAAGTGATTTTGAGCGAGTTATATGGGTTGGAAGTAAGACCTGAAATTGTGTTTGATACACTATCGAATCACGATGTTGTGAAGACAGAAAGTGATAATTTATATAATGGAGAATATTTACAAGAAGGTATTTCACTGTTTTCACCATATTTTGAAGATGTACAACCAACAGTAAAGGAGGAAAAAGATGAAAAAGTGGATATTGTAAATGATACTAAATCAGATCTTCCACTTATAGAAGTCCCAACACCAGAATATCACATAAAAGATACATGGAACACATACCCCTGGCTATGTGCTCTATGTAATACAACGATGTGTACTGTGAGAGCGTTACGAGAGCACTGTCGGACCGACCATCTTAAATGTTCTGCATACAAATGTGCTGATTGTGATGAACGGTTGCACAGTTTTGAGGAGATGGTGAAGCATGTTAGGAAGCATAGGAAGTATTTAAGAAACTGTTGTGAATACTGCAACGTGCAAATACAAGATATCAGTCACATTAAGTCTCACATGATGGAAGAAAATTGCAGTTTCTGCGGCGAGACATTCAACGACGAAATATCTCTGATCACCCACTTGAAGCAATATGCAGCAACTTCCTCAGGACTACTCGCCTTCGATGTGGAGATCACAGAACTTGATGGCATACAGAACTGGACAGGATACCCTTCTATTTGCCAGTTTTGTCAATTAAAAGTTGTGAATAAAGATGTGCTAAGCGAGCATTGTATTGAGGCCCACAAGAAATGCTTTGGGAGTCAGTGTGTAGACTGTGAAGTTAGAATGTCTTGTTTTAAGGATTTTTTGGAGCATGTGAAGGCACATCGTCCGAATTTGAGAAAAATCTGTCCATATTGCAACATAAACATGGGTTTCGAAGATATCAGTCACATTGAGGAGCACACGATTTCTCACCACCCTTGCACTCTTTGCGGCGAAATTTTCCAAACCAAAGAACAATTACAAACCCACGAATCCACCCAACTGTTACCAAGAAAAAAACGTAGAAAAGGACCCATAGAAAACAATTCCACGTGTGACGTCTGCGGCATGGTTATGAAAACACCAGCCACTATGAAAAACCATTTAAAAATGCACACAGACCGAAAACGCGACCACACTTGCGATCGATGTGGAAAAGCTTACTACACGAGAGGACAATTAGACCAACACTACAAAATACACGATAAAAGAACACAAGAAGCTTGTCAAATCTGCCAAAAAACTTTTCTCACGATATCCAGGTTAAAAAAACATGTAAAAACACATAATTTAGAAATGCCGTTTCAATGTGATCCGTGTAAAAGGGTGTTTAGCTCGAAGGATAGGCTACGGGAGCATGTTAAGGTACATATGGATATCATGCCGTTTAAATGTCAGTATTGCCCCAAAAGGTTTCGACATAAAAGTATAATGAAGACACATGAAAACCAACACACAGGAGCCAGACCCTATAGTTGCAACATCTGTTGCATGCAGTTCGCGAACTGGTCGAACTGCAACAAACATATGAAGAGGAAGCATGGCACTACATTAGCCAAGAACGTTATGACTCCGTATGGAAAACTGGCGTTGAATCCCAACACTGGGAAACCAGATCAGCTGGTTATGGATAATGTGGTGAAGGAATGGTCCGAAAAAATGTTAATGGGTCGCGAGAAAAAGAAAAATGATAATTGA
- Protein Sequence
- MLPNTVCITCYNLLVVSYKFFVKIKRSQVILSELYGLEVRPEIVFDTLSNHDVVKTESDNLYNGEYLQEGISLFSPYFEDVQPTVKEEKDEKVDIVNDTKSDLPLIEVPTPEYHIKDTWNTYPWLCALCNTTMCTVRALREHCRTDHLKCSAYKCADCDERLHSFEEMVKHVRKHRKYLRNCCEYCNVQIQDISHIKSHMMEENCSFCGETFNDEISLITHLKQYAATSSGLLAFDVEITELDGIQNWTGYPSICQFCQLKVVNKDVLSEHCIEAHKKCFGSQCVDCEVRMSCFKDFLEHVKAHRPNLRKICPYCNINMGFEDISHIEEHTISHHPCTLCGEIFQTKEQLQTHESTQLLPRKKRRKGPIENNSTCDVCGMVMKTPATMKNHLKMHTDRKRDHTCDRCGKAYYTRGQLDQHYKIHDKRTQEACQICQKTFLTISRLKKHVKTHNLEMPFQCDPCKRVFSSKDRLREHVKVHMDIMPFKCQYCPKRFRHKSIMKTHENQHTGARPYSCNICCMQFANWSNCNKHMKRKHGTTLAKNVMTPYGKLALNPNTGKPDQLVMDNVVKEWSEKMLMGREKKKNDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686755;
- 90% Identity
- -
- 80% Identity
- -