Basic Information

Insect: Gandaritis pyraliata
Gene Symbol: -
Assembly: GCA_947859175.1
Location: OX401875.1:953056-955912[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7e-05 0.0041 17.7 0.3 1 20 212 231 212 232 0.95

2 16 5.1e-06 0.0003 21.3 1.5 1 23 241 263 241 263 0.98

3 16 3.2e-06 0.00018 21.9 0.7 1 23 269 291 269 291 0.97

4 16 1.6e-06 9.3e-05 22.9 1.2 1 23 297 319 297 319 0.97

5 16 3.6e-06 0.00021 21.8 0.3 1 23 325 347 325 347 0.98

6 16 7.8e-07 4.5e-05 23.9 4.3 1 23 353 375 353 375 0.98

7 16 9.8e-06 0.00057 20.4 0.9 1 23 381 403 381 403 0.98

8 16 3.2e-06 0.00019 21.9 1.9 2 23 414 435 413 435 0.97

9 16 1.8e-07 1e-05 25.9 1.7 1 23 441 463 441 463 0.98

10 16 3.7e-06 0.00021 21.7 0.2 1 23 469 491 469 491 0.98

11 16 1.3e-05 0.00078 20.0 0.3 1 23 497 519 497 519 0.97

12 16 1.1e-05 0.00061 20.3 0.3 1 23 525 547 525 547 0.98

13 16 3.7e-06 0.00021 21.7 0.8 1 23 553 575 553 575 0.98

14 16 9.5e-05 0.0055 17.3 0.4 1 23 581 603 581 603 0.98

15 16 2.2e-06 0.00013 22.5 1.8 1 23 609 631 609 631 0.98

16 16 9.9e-05 0.0058 17.2 0.4 1 20 637 656 637 657 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7e-05	0.0041	17.7	0.3	1	20	212	231	212	232	0.95
2	16	5.1e-06	0.0003	21.3	1.5	1	23	241	263	241	263	0.98
3	16	3.2e-06	0.00018	21.9	0.7	1	23	269	291	269	291	0.97
4	16	1.6e-06	9.3e-05	22.9	1.2	1	23	297	319	297	319	0.97
5	16	3.6e-06	0.00021	21.8	0.3	1	23	325	347	325	347	0.98
6	16	7.8e-07	4.5e-05	23.9	4.3	1	23	353	375	353	375	0.98
7	16	9.8e-06	0.00057	20.4	0.9	1	23	381	403	381	403	0.98
8	16	3.2e-06	0.00019	21.9	1.9	2	23	414	435	413	435	0.97
9	16	1.8e-07	1e-05	25.9	1.7	1	23	441	463	441	463	0.98
10	16	3.7e-06	0.00021	21.7	0.2	1	23	469	491	469	491	0.98
11	16	1.3e-05	0.00078	20.0	0.3	1	23	497	519	497	519	0.97
12	16	1.1e-05	0.00061	20.3	0.3	1	23	525	547	525	547	0.98
13	16	3.7e-06	0.00021	21.7	0.8	1	23	553	575	553	575	0.98
14	16	9.5e-05	0.0055	17.3	0.4	1	23	581	603	581	603	0.98
15	16	2.2e-06	0.00013	22.5	1.8	1	23	609	631	609	631	0.98
16	16	9.9e-05	0.0058	17.2	0.4	1	20	637	656	637	657	0.94

Sequence Information

Coding Sequence: ATGTCCGTGCCACTTGTATGCAGAGTATGTTTACTGTATGATGTTAGAATGGAGAACATTCATAGTTCACAGCTGCAAGAAGCATTTGAAATCCTTTCGAATAATAAGCTTATCACAGAAGATGGTAGACCTGAGACAGTTTGCTATATTTGCTTCTCGCAGTTGCGAAGATGCTGTAAGTTTATGCAAGTGTCACGGAAAGCTGAAAATATACTTACGCAACTGTTCCGCAATGGCCTAAAGGTTACAGAAGAAGCAGTTAAAGTGCTTAATGGAGGCCACAAACTATATATTTCAAAGCCGACAATGCAACCCATGGCCTTCCACAATTTCCCATCAGAACTGGAGTACAGTCTGACAGGTTCTGTCAAGCAGGAGCAACATGTGGCAGAAGGATATCTATTTGAGGATGTCCATGAAGATGTTAAATTGGATCCCGTTGAATTTGTTGAAGCACCTGATTCAACAGAAATAAAAGAAGAAAACAGTGAATTTCATGATAAAACCAACCATAACTTTACACAATCAAGCAATGTTAAAAAGGAACAATTGAATACTGAACTATCCTCCTGTGATAATGTTACAGCTCAAGCAAGTTTACACAACAGAGACATGTCAATCAGTCAAGAAGGGTTTTCTtgtgatatgtgtgataaagtattcactgaaaaccatcagttggaaacacatgttatttgcatgcatgcagaaggaaaaccatatgcatgtaaaatgtgcagtaaaaggtttccattcaaatctaaattagaaaggcatgtacgaatccatacagcagagaggtcatttgcatgtgaaatatgcagtaaaaggtttccgtttaagtctaaactggaacggcatgtacgaatccacacagaagagaagtcatttgcatgtgaaatatgcactaaaaggtttccattcaaatctaaactggaaaggcatgtacgaactcatacagaagagaagccatatccgtgtgacatgtgtaataaaacattcgccgaaagcgggactttaaaaatccaccggagagttcacactggtgaaaaactttattcctgcaaaatatgccaaaagtgtttcacgactaacaacactttgaaaaaacacatggcaatacataatggcgagaaactattttcctgtgacaaatgcgacaaatcctttccagttttagaatacttgaaacgtcataaaaatatacattttgtagaaaaaagaaagaccttttccagtacctgtgataggtgcggtaaagctttcgttgataaatgtgctctaagaaaacacatgaaaatacacactgcagaaaaaatatttgtttgtgacatgtgcgataagcgatttgcaacgaggtctaagttgaaacgacatgtcagaagccacacggaagaaaggccatacgcttgtaaattgtgtgataaagctttcgctgaaactggaagcctaaaaacccacatgagagtacacaccggtgaaaagccatattcctgcgacgcgtgcggtaaaggcttcgcacaatctaactcattgaaaaagcaccttacaattcacacaggtgaaagacagtttacctgcgccgtctgttataaaggttttgctgtaaaaaataacttgacagaccacatgagaatacacagtggagaaaagccatatatctgcagcatatgcaatagaggcttcgctcagtctaactctttgaaaaaacacctcacaactcatactggagaaaagcagtattcttgtgtcatctgtttcaaaagttttgcagctaaaaatagctggaaaattcacatgcgggttcatagtggtgaaaagccatattcctgcaatgcatgtagtaaatcttttatagatagcagcacattgaatagacataagagaacacacacgggagaaaacccatacacctgcattgaatgcaacaaGTCATTTAGTAGAAAAGCTTATTTACAGAAACATGTTGCGTTTTGCAAACGCTAG
Protein Sequence: MSVPLVCRVCLLYDVRMENIHSSQLQEAFEILSNNKLITEDGRPETVCYICFSQLRRCCKFMQVSRKAENILTQLFRNGLKVTEEAVKVLNGGHKLYISKPTMQPMAFHNFPSELEYSLTGSVKQEQHVAEGYLFEDVHEDVKLDPVEFVEAPDSTEIKEENSEFHDKTNHNFTQSSNVKKEQLNTELSSCDNVTAQASLHNRDMSISQEGFSCDMCDKVFTENHQLETHVICMHAEGKPYACKMCSKRFPFKSKLERHVRIHTAERSFACEICSKRFPFKSKLERHVRIHTEEKSFACEICTKRFPFKSKLERHVRTHTEEKPYPCDMCNKTFAESGTLKIHRRVHTGEKLYSCKICQKCFTTNNTLKKHMAIHNGEKLFSCDKCDKSFPVLEYLKRHKNIHFVEKRKTFSSTCDRCGKAFVDKCALRKHMKIHTAEKIFVCDMCDKRFATRSKLKRHVRSHTEERPYACKLCDKAFAETGSLKTHMRVHTGEKPYSCDACGKGFAQSNSLKKHLTIHTGERQFTCAVCYKGFAVKNNLTDHMRIHSGEKPYICSICNRGFAQSNSLKKHLTTHTGEKQYSCVICFKSFAAKNSWKIHMRVHSGEKPYSCNACSKSFIDSSTLNRHKRTHTGENPYTCIECNKSFSRKAYLQKHVAFCKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00686547;
90% Identity: -
80% Identity: -