Etes013269.3
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382219.1:6771845-6774709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8.4e-05 0.0051 17.4 0.4 1 20 166 185 166 186 0.96 2 16 2.6e-06 0.00016 22.1 1.6 1 23 195 217 195 217 0.98 3 16 1.1e-06 6.8e-05 23.3 0.8 1 23 223 245 223 245 0.98 4 16 4.2e-07 2.6e-05 24.6 1.1 1 23 251 273 251 273 0.98 5 16 3.1e-06 0.00019 21.9 0.3 1 23 279 301 279 301 0.98 6 16 3.4e-07 2.1e-05 24.9 2.2 1 23 307 329 307 329 0.98 7 16 1.1e-05 0.00065 20.2 0.7 1 23 335 357 335 357 0.97 8 16 0.00024 0.015 16.0 2.2 2 23 368 389 367 389 0.97 9 16 8e-07 4.9e-05 23.8 1.1 1 23 395 417 395 417 0.98 10 16 3.3e-06 0.0002 21.8 0.2 1 23 423 445 423 445 0.99 11 16 1.2e-05 0.00071 20.1 0.3 1 23 451 473 451 473 0.97 12 16 7.3e-06 0.00044 20.7 0.3 1 23 479 501 479 501 0.97 13 16 3.2e-06 0.0002 21.9 0.8 1 23 507 529 507 529 0.98 14 16 2.3e-05 0.0014 19.1 1.8 1 23 535 557 535 557 0.98 15 16 1.9e-06 0.00012 22.6 1.8 1 23 563 585 563 585 0.98 16 16 8.6e-05 0.0053 17.4 0.4 1 20 591 610 591 611 0.94
Sequence Information
- Coding Sequence
- ATGTCTGTGGTACCTGTGTGCAGAGTATGTTTACTGGACAATGTTAGAATGGAGAACATTAGTCTACAGCTGCAAGAAGTATTTGAAATCCTTGCTAATAATATGATAACAGGAGAAGCGGTTAAAGTGCTAAATGGAGGCCATCAACTAAATAATTCAATGCCAACAATGCAACCCATGGCCTTCCACAATTTCCCTTCAGAACTGGAGTACAGTCTGACAGGCTCTGTGAAGCAGGAGCATTTTTTGGCAGAAGGATATCTATTTGAGGATGATCATGAAGATGTCAAATTGGATCCCGTTGAGTTTGTTGAAGCACCAAATTCAACAGAAATAAAAGAAGAAAACAGTGAATTTAATGATAGAACCAACCATAACTTTGCACAAACAAGCAATGTTAAAAAGGAATTATTGAATACTGAACATTCCTCCAGAGATAATGTTACTGCTGAGGCAAATATGCACAACAGAGACATGTCATTTAGTCAAGAAGGATtttcttgtgggttgtgtgataaagtgttcactgaaaaccatcagttggaaacacacattagttgcatgcatgcgggagtaaaaccatattcatgtaaaatatgcagtaaaagatttccgtttaagtctaagctggaaagacatgcacgaatccatacagaagataagtcatatgcatgtgaaatatgcagtaaacggtttccgttcaaatctaaactggaaaggcatttacgaattcatacagaggataagtcatttgcatgtgaaatatgcagtaagaggtttccattcaaatctaaattggaaaggcatatacggactcacacagaagagagaccatatccatgtgacatgtgtaataaaacattcgctgaaagcggaaccttaaaaatccacaggcgagtccatactggtgaaaaactttattcctgcaaaatatgccaaaaacgattcacgactaacaacaccttgaaaaaacacatggcgatacataatggcgagaaactatttgcctgtgataaatgcgacaaatccttcccagttttagagtacttgaaacgacataaaaaaatccattttacagaaaagagaaagtgcttttccagtacctgtgatagatgtggtaaagcattccttgataaatgtgctctgagaaagcacatgaaaatacacactgcagaaaaaatatttgtttgtgacatgtgcgataagcgatttgcagtgaggtctaagttgaaacgacatgtcagaagccacacggaagagaaaccctatgtctgtaaattgtgtgataaagcgttcgctgaaactggaagcctgaaaacccacataagagtgcacaccggggaaaaaccctattcatgtgacgcgtgcggtaaaggcttcgctcagtctaactcattgaaaaagcaccttacaattcacacaggagaaaggcagtttgcatgtgtagtttgctataaaagcttcgctgtaaaaaacaatttgacagaccacatgagaatacacagtggggagaaaccatatatctgcagcatatgcaatagaggtttcgcacagtctaactcgttgaagaaacatctcacaactcatactggggagaagcaatattcttgtgtcatctgtttcaaatgttttgcagctaaaaatagcttgaaaattcacatgagggtccatagtggcgagaaaccgtattcctgcaatgcatgcagtaagtctttcatagatagcagcacattgaatagacataagagaacgcacacgggagaaaatccatacacgtgcattgaatgtaacaagtcgtttagtaggaaagcttatttacaaaaacatgttGCGTTTTGCAAACGCTAG
- Protein Sequence
- MSVVPVCRVCLLDNVRMENISLQLQEVFEILANNMITGEAVKVLNGGHQLNNSMPTMQPMAFHNFPSELEYSLTGSVKQEHFLAEGYLFEDDHEDVKLDPVEFVEAPNSTEIKEENSEFNDRTNHNFAQTSNVKKELLNTEHSSRDNVTAEANMHNRDMSFSQEGFSCGLCDKVFTENHQLETHISCMHAGVKPYSCKICSKRFPFKSKLERHARIHTEDKSYACEICSKRFPFKSKLERHLRIHTEDKSFACEICSKRFPFKSKLERHIRTHTEERPYPCDMCNKTFAESGTLKIHRRVHTGEKLYSCKICQKRFTTNNTLKKHMAIHNGEKLFACDKCDKSFPVLEYLKRHKKIHFTEKRKCFSSTCDRCGKAFLDKCALRKHMKIHTAEKIFVCDMCDKRFAVRSKLKRHVRSHTEEKPYVCKLCDKAFAETGSLKTHIRVHTGEKPYSCDACGKGFAQSNSLKKHLTIHTGERQFACVVCYKSFAVKNNLTDHMRIHSGEKPYICSICNRGFAQSNSLKKHLTTHTGEKQYSCVICFKCFAAKNSLKIHMRVHSGEKPYSCNACSKSFIDSSTLNRHKRTHTGENPYTCIECNKSFSRKAYLQKHVAFCKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00737668;
- 90% Identity
- -
- 80% Identity
- -