Gmel014678.1
Basic Information
- Insect
- Galleria mellonella
- Gene Symbol
- salm
- Assembly
- GCA_958496185.1
- Location
- OY292299.1:326796-330352[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 7.1e-07 0.018 15.6 0.1 20 49 163 192 155 195 0.88 2 6 0.0021 52 4.5 0.2 21 44 222 245 218 249 0.90 3 6 0.00054 13 6.4 0.1 21 46 250 275 245 282 0.86 4 6 0.00092 23 5.7 0.1 22 47 279 304 276 311 0.88 5 6 0.059 1.5e+03 -0.1 0.0 18 33 331 346 326 363 0.80 6 6 0.021 5.2e+02 1.3 0.0 21 48 359 386 351 391 0.87
Sequence Information
- Coding Sequence
- ATGGACTTGAAACTGTGCAGAATTTGTTTAAAAGAAAACGGTACGATCTCATTATTTGAAAAGTGTGAAAATGCTATGATATACAGTGCTAAAATAATGCAATgtgttaatataaacataactgAAGGTGATGGTTTACCAAACTCCATGTGTGATAGCTGCGCCAACGAACTGGATGTGTCGTACAGATTCGTGCGAAAGTGTGAGGCATCCGACCGAGCTCTCCACTGCCTGTCTGTCATTGAAGTAAAACTGGAAGAGATCAAAAGCGaagatattaataatgaattaaatctCAGCGTGGATAGTGATGTATATTTGGACGATTTTACGAAACTCGATACGCCGGAACCAGAGTCAGATGAAAGTCAGCatcaaataaaacacaaaagaaaaaaacgtACTAAGAATGGACCAATACAGTGTGTCGTATGTGGCATGATGAAGATCTCCCATTCAGCTATGGAGATACATATGAGATCACATACTGGTGAGAAGCCATACCCATGCCAAATTTGTAAAGCCATGTTTAAAACTAAAGGCTCCTTAAAAAGACACAACGAAACCAGGCATTTGGATAGGGAAAGAAAATTCACATGTGAAACTTGTGGCAATAGTTTTTATAggaaaaatgatattattatacatatgagAGTGCATACTGATGAGAGGCCATACTCTTGCACGTTTTGCACTAAAAAATTTAGACAAATTGCATCACTGAATCGTCATAAACGAATACACACTGGCGAAAAGCCATACTCTTGTCCGATTTGTGCTAAGAAATTCTCAGACTCGTCTCTCGTGAACAAACATCTGACTGTGCATACAGATGAGAAGAAACATACCTGCCACCTGTGCAGCAAGTCTGTAAAGAGCAAAAGTGCACTCAGGACTCATTTGAGTCTCCATTCTAATGAAAAACAGAACATTTGCAACTTTTGTGGCTTAGCTTTTTCAATGAAAGGCAACCTACAAACACATATACGAAGGATCCATTCAGAGAAATCGGGTGAATGTTCAGTATGCTTTAAAACATTCTCCGACTTGGAAGTTCACATGCGAAAGCACACTGGAGAGAAGCCGTTCATTTGCAAACTGTGTAACCAAGGATTTGCTACTAAGAGAAGCCTGTCACATCACAAGGCCTTCAAACATGAGAATGccaACCCCCATCCTGTCCGACTGGGGAGGCGAACCCCAAAATCAACGGCGCGGAAATCCTCGCCGGCTATAGTTTCAAAAGCGCGCGTCTGTCCGCCACAGACAAAGCAGCACGCCGTCGATAAAGCTGCACCAGGCGAGCGAGGTGAGGTGAGCGATACGCGGCCGCGACTCGCGAGTGTACGTCGCGTCTATAGTACAGTGCTGAGGACGTTAGCCCGCGATCGTTCGCCGCAGCGGACGTCTCGTCACGCTCGCACAATCGTTCCACAACCGTGGCAGGTGTCAGTGTCGTCATGTCCAAACCGTGAAACAGTTCTTCGTGTGTGCTTCACTGTTACTTCCTTCCTGTTCGGATATCGGATTGTTCTTCGTGTTTCCAGTATGGGCGAATTTGCCGGACAGACGGAGGCTCGCGCTTGGTCCTGTGGTTGTGCCGCCGAGTTCGTAGGTCGTCGGCATAGGATACAGTTGGCCGATTCTCGCAGTGCGGCTGCGGTGGCGTCTGACCGCGCCGCGGGTCGGTGCCATTCACGAATCTCCGGATTAATTAACACTTTCGTACGCGAGAATAATGGTGCGAGTTTGGAAATGTATGCCGAGGTGCTCTGTAGAAAGCTCAAGAGGCCCCAAATAGAGGTTCGATCGGCCGCATCGTTAAATGGACACGAGATTAGCGAAGAGGTAGTGAATAGCAATGATCAGCCTAATGTTAAGCGGCTATTGTTACCTTAA
- Protein Sequence
- MDLKLCRICLKENGTISLFEKCENAMIYSAKIMQCVNINITEGDGLPNSMCDSCANELDVSYRFVRKCEASDRALHCLSVIEVKLEEIKSEDINNELNLSVDSDVYLDDFTKLDTPEPESDESQHQIKHKRKKRTKNGPIQCVVCGMMKISHSAMEIHMRSHTGEKPYPCQICKAMFKTKGSLKRHNETRHLDRERKFTCETCGNSFYRKNDIIIHMRVHTDERPYSCTFCTKKFRQIASLNRHKRIHTGEKPYSCPICAKKFSDSSLVNKHLTVHTDEKKHTCHLCSKSVKSKSALRTHLSLHSNEKQNICNFCGLAFSMKGNLQTHIRRIHSEKSGECSVCFKTFSDLEVHMRKHTGEKPFICKLCNQGFATKRSLSHHKAFKHENANPHPVRLGRRTPKSTARKSSPAIVSKARVCPPQTKQHAVDKAAPGERGEVSDTRPRLASVRRVYSTVLRTLARDRSPQRTSRHARTIVPQPWQVSVSSCPNRETVLRVCFTVTSFLFGYRIVLRVSSMGEFAGQTEARAWSCGCAAEFVGRRHRIQLADSRSAAAVASDRAAGRCHSRISGLINTFVRENNGASLEMYAEVLCRKLKRPQIEVRSAASLNGHEISEEVVNSNDQPNVKRLLLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736850;
- 90% Identity
- iTF_00736850;
- 80% Identity
- iTF_00736850;