Gmel013288.1
Basic Information
- Insect
- Galleria mellonella
- Gene Symbol
- -
- Assembly
- GCA_958496185.1
- Location
- OY292297.1:2325383-2337877[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.027 1.8 9.6 2.1 1 23 281 303 281 303 0.98 2 12 0.0013 0.082 13.8 1.0 2 23 311 332 310 332 0.93 3 12 0.026 1.7 9.7 0.8 1 23 336 358 336 358 0.97 4 12 0.00043 0.028 15.3 0.9 1 23 363 386 363 386 0.98 5 12 0.0025 0.16 12.9 0.1 1 23 390 413 390 413 0.94 6 12 0.001 0.068 14.1 0.4 2 21 433 452 432 457 0.92 7 12 0.022 1.5 9.9 0.6 3 23 467 488 467 488 0.98 8 12 0.34 22 6.2 0.3 3 23 509 530 508 530 0.96 9 12 4.3e-05 0.0028 18.4 0.3 1 23 541 563 541 563 0.98 10 12 1e-05 0.00066 20.4 4.7 1 23 569 591 569 591 0.98 11 12 0.00024 0.015 16.1 0.3 1 23 597 619 597 619 0.98 12 12 7e-05 0.0046 17.8 0.3 1 23 625 648 625 648 0.98
Sequence Information
- Coding Sequence
- atggaAGACGTGAAAGTATGCAGGTTGTGCTTAATCACGGacgtaaaaatgtataatttacaaTCATATCCATTTGTAAATTACTTTGAATCTATAGTTGGAAATAATTCATTTAATTCAGTGGGAATGCCAGTTTACAGTTGCTATGAGTGCACAGCTCTtgcaaaaaaatactattatttcaaGGAGCGATGCACAAGGGGGCAAGCAGCTCTGTATGATATATTATGTAGATCTGGAAAGataacaAAGACTGATATTATGTGTGTAAACAGACATGAACTACACCTGCAGTCtaatttaaacattacaaaGTCTTTTGTGGTGGATGTCTTAATAAACTGTGACTTTAGTGAATTGTCAACCATAGATAACCCAGAGGAAATTAAGCAGGAACCATGTGTAGAAGAAACTGCACAACCATCCAtagttaatattgaaattatcaaaaatgaaGAATCTTGTGATGTATTTTTATCACCAACAGTATCGTCTAGTGAAGACGATGAACCTTTATCTCTACATAAGAGTaaggataaagaaaaaaagaaaggaagGAAGAAGAAAAAGGCTGTGGTTGATAATTGGAATATACCTGATGAACCCAACGGGGCTTCCGAAACGGATGTAGCACCGGTGGTGCCGAGGAAACGAGGCCGTCCGAAGAAGTCCGAAACGCAGCCGAAGCCGCGGAAAGCCCGCCGCGCGCTCAACGCTGAGGGTATACCGTCTGACGAGGATGACCTGGAACAGTACGTTACTGTTATAAAACTAAcgGAACAAGAGCAGATAGACGAGATAACCAAACGTCAGGAGTCATCCAACTATTTGAACGCGCCGTACCGCTGCGAGCTGTGCTATAAAGGATTCATAGAAACCCGCGCGTGGAAACACCACCTCAGTAAGCACGACCCCtCGGCCGGTGACATAGAATGCGTCGTTTGCAAGTTCAGGTTTAAAACGAAGCGCACCTTGCAGAAACACGCCGCGAATCACGAGAAGAAGTACGCCTGTAAATCGTGCCCCTACGTATCGAAGACAACAACTCAGGCGAAGCAGCATCAAAGGTGGCACAAAGGCGTCACCTACAAATGTCAGTACTGTGATGAGGTTTCCACTAAATGGACATCGTACTTGAGCCACGTGCGAATCAAACACCCGTCGGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCAAGCTCGGCCTCGCCATGCACAAGACCATGATGCACAAGGAACAAGCGcaAAAAGAGCAAGAAGAGAACGGCGACAACGAAGGAGAAACACAGTATTGCAAAGAGTGTGACGTGAAGTTCGTATCATTGGAGGCATTCAAGAGGCATATGGTCACATCCGCCAAGCATGCGCAGAGCACCAACTTCAACACGGGCTGCCGCGTGTGCGGCGAGCGGCTGGAGAGCGCGGAGGCGCTGCGGCTGCACCACCGGCGGCTGcacgcgcgccgccgcccgcgcaaCTACGGCAAGAAGCCCGCGCCGCACCGCTGGCCCGCGCCTTGCGACCACTGTTCGGAGGAGATACCAAATGCGCGTGAATACTGGACGCACTTCCGGCGGGCGCACCCCGACAAGAAGTACCCCATACAGAAGAATTACATTTGTGACATCTGCGGCAAGGGATTCCGGGGCAACGCGTTCCTGGTGTACCACAAGCGCACGCACTCGGAGGAGCGGCAGTTCTCGTGCCCGCAGTGCGGCAAGGCCTTCCACAACCGCACCAACCTGCACATGCACCTCAAGACGCACTCCGACCTGCGGCCCTACCCCTGCGCGCTCTGCCTCAAGGCCTTCAAGTCCAAGGGCGCGCTCGACCGCCACTTCAGGAGCCACACGGGCGTGAAGCCGTACTCGTGCGAGGTGTGCGGCAAGGCGTTCGGGCAGTCGAACAGCCGCAAGCTGCACGTGCGCACGGTGCACCTCAAGCAGCCCGCGCCCTACCTCAGCCGCGCGCGCCAGGACCGCCTCGAGCGCCGCTCCCGCCTCGCCGCCAAGGACGTGCAGCCGGACGCCGCCTTCTACTGA
- Protein Sequence
- MEDVKVCRLCLITDVKMYNLQSYPFVNYFESIVGNNSFNSVGMPVYSCYECTALAKKYYYFKERCTRGQAALYDILCRSGKITKTDIMCVNRHELHLQSNLNITKSFVVDVLINCDFSELSTIDNPEEIKQEPCVEETAQPSIVNIEIIKNEESCDVFLSPTVSSSEDDEPLSLHKSKDKEKKKGRKKKKAVVDNWNIPDEPNGASETDVAPVVPRKRGRPKKSETQPKPRKARRALNAEGIPSDEDDLEQYVTVIKLTEQEQIDEITKRQESSNYLNAPYRCELCYKGFIETRAWKHHLSKHDPSAGDIECVVCKFRFKTKRTLQKHAANHEKKYACKSCPYVSKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLAMHKTMMHKEQAQKEQEENGDNEGETQYCKECDVKFVSLEAFKRHMVTSAKHAQSTNFNTGCRVCGERLESAEALRLHHRRLHARRRPRNYGKKPAPHRWPAPCDHCSEEIPNAREYWTHFRRAHPDKKYPIQKNYICDICGKGFRGNAFLVYHKRTHSEERQFSCPQCGKAFHNRTNLHMHLKTHSDLRPYPCALCLKAFKSKGALDRHFRSHTGVKPYSCEVCGKAFGQSNSRKLHVRTVHLKQPAPYLSRARQDRLERRSRLAAKDVQPDAAFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00008287;
- 90% Identity
- -
- 80% Identity
- -