Agri002326.1
Basic Information
- Insect
- Achroia grisella
- Gene Symbol
- -
- Assembly
- GCA_030625045.1
- Location
- JAULSB010000053.1:1158865-1170435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0073 0.53 11.5 1.7 1 23 281 303 281 303 0.98 2 12 0.0013 0.094 13.9 1.0 2 23 311 332 310 332 0.93 3 12 0.076 5.6 8.3 0.8 1 23 336 358 336 358 0.97 4 12 0.00044 0.032 15.3 0.9 1 23 363 386 363 386 0.98 5 12 0.0025 0.18 12.9 0.1 1 23 390 413 390 413 0.94 6 12 0.0009 0.066 14.3 0.4 2 21 432 451 431 456 0.92 7 12 1.8 1.3e+02 4.0 3.4 3 23 466 487 466 487 0.94 8 12 0.22 17 6.8 0.6 2 23 507 529 506 529 0.96 9 12 4.4e-05 0.0032 18.5 0.3 1 23 540 562 540 562 0.98 10 12 3e-05 0.0022 19.0 2.7 1 23 568 590 568 590 0.99 11 12 0.00025 0.018 16.1 0.6 1 23 596 618 596 618 0.98 12 12 7.6e-05 0.0056 17.7 0.1 1 23 624 647 624 647 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACGTAAAAGTGTGCAGATTATGCTTAATTACAGACGTTAAAATGTACGACGTGGAGTCATATCcgtttgtaaattattttgagTCAATAATTGGAAATAATGCATTTAATGCATTGGGGATGCCGCTGTACAGTTGTTATGAGTGCACAGCTCTTGCCAAGAAATATCACGACTTCAAGGAGCGATGTATAAGGGGACAAGCAGTGCTTTACGACTTATTATGTAAATCTGGAAAGATTACAAAAACTGGTATCACCTGTGTAAATAGACATGATCTACATCTGCAGTCTAATTTAAGCACTACAAAATCTTTCGTCGTAGATGTGTTAATAGACTATCAGTGTCCGGAAATATCACCAGAAAAAAGCCAGCAAGAAATTAAACAAGAGCCATCTATTGAAGATATTGAACAACCAAGTGCAGTTGAAACAGAAGATGTTAAGTTGGAGGACTCGTTTGatgtgtttctgtcaccaacaGTATCATCTAGTGAGGATGATGAACCATTGTCGCGGCACAGGagtaaagataaagataaaaagaagggaaagaagaagaaaaagattGTGGGCGACAATTGCAGTACCAATAATGATACCAACGAGGCTTCCGAACCAGAAGTGCTTCCAGTGGTACCCAGAAAGCGAGGGCGTCCAAAGAAGACGGAGACAGTGCCAAAGCCTCGGAAGGGTCGCCGCGCTCCGACCGTTGAGGGTATACCGTGTGATGAGGACGACCTGGAACAGTATGTCACTGTTATAAAATTGacgGAACAAGAGCAGATTGAAGAAATTATGAAACGGCAGGAGTCGTCTAACTATTTGAACGCGCCGTACCGCTGCGACCTCTGCTACAAGGGTTTCATAGAGCCGCGAGCATGGAAGCACCATCGCAGCAAGCATGACCCAAGTGCCGGCGATATAGAATGCGTGGTATGTAAGTTCAGGTTTAAAACAAAACGCACGCTGCAGAAACACGCCGCCAATCATGAGAAGAAATACGCTTGTAAATCGTGCCCCTACATCTCAAAAACTACaaCCCAGGCGAAACAACATCAAAGGTGGCATAAGGGTGTCACTTACAAATGTCAGTACTGTGACGAGGTTTCCACTAAATGGACATCATACCTGAGCCACGTGCGGATCAAACACCCTTCGGAGTTCATCTGCGGCGTGTGTGGATATTCGTTCGTGAGCAAGCTGGGCCTCGCCATGCACAAGACCATGATGCACAAGGAACAAGCGCAAAAGGAACAAGAGGAAGGTGAGAACGAGGAAGATATGCAGTATTGCAAAGATTGCGATGTGAAGTTCATATCGTTGGAAGCGTTCAAGAGACACATGGTCACGTCTGCGAAGCACGCGCAAAGCACGAACTTCAACACGGGTTGCCGCGCGTGCGGGGAGACGTTCGAGTGCGCGGAGTCGCTGCGGCTGCACCACCGGCGGCAGCACGCGCGCCAGCGACCCAAGAACTACGGCAAGAAGCCCGCCGCGCTCCGCTGGCCCACGCGCTGCGAACACTGCTCGGAAGAGATTCCAAACGCGCGCGAGTACTGGACGCACTTTCGGCGCGCCCACCCAGACAAGAAGTACCCCATACAGAAGAATTACATCTGTGATATATGCGGCAAGGGCTTCCGGGGCAACGCGTTTTTGGTGTACCACAAGCGGACCCACTTCGAGGAGCGTGCGTACAAATGCGCGCAATGTCCGAAGGCTTTCCACAACCGCACCAACCTGCAGATGCACGAGAAGACGCACTCCGACCACCGGCCGTACCCCTGCACTGTTTGTATGAAGGCGTTCAAGTCCAAGGGCGCACTCGACAGACACTTTAGAAGTCACACCGGCGTGAAGCCGTACCCGTGCGAGGTGTGCGGCAAGGCGTTCGGTCAGTCCAACAGCCGCAAGTTACACGTGCGCACCGTCCACCTGCGGCAGCCCGCGCCCTACCTCAGCCGCACCCGCCTCGAGCGACTCGAGAGACGCGCGCGGCCTCCGCGACCCGACGCCTGCTACTGA
- Protein Sequence
- MEDVKVCRLCLITDVKMYDVESYPFVNYFESIIGNNAFNALGMPLYSCYECTALAKKYHDFKERCIRGQAVLYDLLCKSGKITKTGITCVNRHDLHLQSNLSTTKSFVVDVLIDYQCPEISPEKSQQEIKQEPSIEDIEQPSAVETEDVKLEDSFDVFLSPTVSSSEDDEPLSRHRSKDKDKKKGKKKKKIVGDNCSTNNDTNEASEPEVLPVVPRKRGRPKKTETVPKPRKGRRAPTVEGIPCDEDDLEQYVTVIKLTEQEQIEEIMKRQESSNYLNAPYRCDLCYKGFIEPRAWKHHRSKHDPSAGDIECVVCKFRFKTKRTLQKHAANHEKKYACKSCPYISKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSKLGLAMHKTMMHKEQAQKEQEEGENEEDMQYCKDCDVKFISLEAFKRHMVTSAKHAQSTNFNTGCRACGETFECAESLRLHHRRQHARQRPKNYGKKPAALRWPTRCEHCSEEIPNAREYWTHFRRAHPDKKYPIQKNYICDICGKGFRGNAFLVYHKRTHFEERAYKCAQCPKAFHNRTNLQMHEKTHSDHRPYPCTVCMKAFKSKGALDRHFRSHTGVKPYPCEVCGKAFGQSNSRKLHVRTVHLRQPAPYLSRTRLERLERRARPPRPDACY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736853;
- 90% Identity
- -
- 80% Identity
- -