Gnym019154.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_963978555.1
- Location
- OZ021710.1:214994-216822[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.085 1.2e+03 0.9 0.1 23 46 96 119 94 125 0.82 2 7 0.051 7e+02 1.6 0.1 21 43 122 144 119 146 0.82 3 7 0.00052 7.1 8.0 0.1 18 44 146 173 140 181 0.80 4 7 0.15 2e+03 0.2 0.0 21 43 178 200 174 204 0.78 5 7 0.012 1.7e+02 3.6 0.0 21 46 234 259 227 265 0.83 6 7 0.0061 84 4.6 0.0 21 44 262 285 259 290 0.88 7 7 0.00059 8.1 7.8 0.0 20 45 317 342 310 348 0.89
Sequence Information
- Coding Sequence
- ATGGAAGTGAATCAAGATACAGTCGATATTTTCATGGAGGAGTATAAGCCTGAAACCGAAGAGTATTTTATTCCGAATGCAACAGTAAAAAACGAATTCGATTCAATAAAACAGGAGAATGATGATGACAATATAGGACCTGAGTTACAAAGTGAAACAGTTGATGATCCCGACATAAAGTGCAACTTAGCTGAATTAAAAGATATGAAACAATCGAGAAAAGaaACTTCGGTAAAATGGAACAATACAAAGTCTTTGCTCTCACCTGGAGGTGACCCAAACATAAAACCgttcaaatgtgaaatttgctCAAAATCGTTCGGCAGAAAAAAAGTTTTGAGAATACACATGAACTGTCATTTAAGTGAAAAACCATACAATTGTGAAGTTTGCTTGAAATCGTTTACTACAAGTTTTGGATTAAAGATGCATAGACGCAGTCACACAGGTGAAAAACCATACCAGtgtgaaatttgttcaaaatcgtTTATTTTAAACAGCAATTTAAAAAGGCACATGTTTAGTCACTCTGGCGAAAAACCTTTTAAATGTGAAGTTTGTTCAAAATCATTTAGGACAAACTATCTATTAAAGTTGCATAGACAGTATCATACAGGTGAAAACTTATTGAAATGTGATTTCTGTCCGAAGAATTTTGTTGAAAGGAACAAATTAGTTGAGCATATGCGCTGTCACACAGGCGAGAAACCATTTAAATGCGACATTTGCTCGAAGAGTTTTCCTAAAAATAGCGCATTACATCGACATTGGCGATTTCACACAggagaaaaaccattcaaatgtgacatttgcttTAAAGACTTCACAGATAGAGGTAATCTCAATGTACATTTGCGCAACCACAAAGAAGAAACGCTGTTCAAATGCGAATTTTGTTCGAAAACATTTAAAGTGAAGAGTAGTTTAGATGTACATATGAGTTGTCACACGGGTGAAAAACCATTTAAATGTGATATTTGCTCGAAAACTTATACTGAAAAGAGATCATTAAATCGACATATGCGAAAACACACAGGCGAAAAAAGTAGTGCGCAAAGTGATACTGTTTCACACGCTTTAGCAGAACCGTGCTAG
- Protein Sequence
- MEVNQDTVDIFMEEYKPETEEYFIPNATVKNEFDSIKQENDDDNIGPELQSETVDDPDIKCNLAELKDMKQSRKETSVKWNNTKSLLSPGGDPNIKPFKCEICSKSFGRKKVLRIHMNCHLSEKPYNCEVCLKSFTTSFGLKMHRRSHTGEKPYQCEICSKSFILNSNLKRHMFSHSGEKPFKCEVCSKSFRTNYLLKLHRQYHTGENLLKCDFCPKNFVERNKLVEHMRCHTGEKPFKCDICSKSFPKNSALHRHWRFHTGEKPFKCDICFKDFTDRGNLNVHLRNHKEETLFKCEFCSKTFKVKSSLDVHMSCHTGEKPFKCDICSKTYTEKRSLNRHMRKHTGEKSSAQSDTVSHALAEPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00736057;
- 90% Identity
- iTF_00736057;
- 80% Identity
- iTF_00736057;