Gnym028706.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- Zfp42
- Assembly
- GCA_963978555.1
- Location
- OZ021714.1:9564195-9565457[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.028 4.3 9.1 1.2 2 23 85 107 84 107 0.96 2 11 0.03 4.6 9.1 0.2 1 23 127 150 127 150 0.97 3 11 0.0032 0.5 12.1 1.6 1 23 154 176 154 176 0.99 4 11 0.059 9.1 8.1 2.6 1 23 182 205 182 205 0.97 5 11 0.0014 0.22 13.2 0.4 1 23 211 233 211 233 0.88 6 11 0.0017 0.27 12.9 2.9 1 23 239 262 239 262 0.96 7 11 0.00025 0.039 15.6 1.1 2 23 274 296 273 296 0.96 8 11 9.3e-06 0.0014 20.1 1.0 3 23 310 330 308 330 0.96 9 11 1.5e-05 0.0023 19.4 1.4 1 23 336 358 336 358 0.97 10 11 5.9e-07 9e-05 23.9 0.7 1 23 364 386 364 386 0.98 11 11 0.014 2.2 10.1 0.0 1 21 392 412 392 413 0.95
Sequence Information
- Coding Sequence
- ATGAAAGTAGACGACAAGATATTTGTAGTCGATAATATTACCCCGCCTTCGAGAAAAGCTAAAGAACTAGCTCCcagaaaagtaaaaataaaactagaagAAGACGACGAATTTACAGAAGAAGAATTTAGCGATGAAGATTACACTCCACCTGGatataagaaaaagaaaaacaaatgtCCCAAAGAAAAGAAACCACCGAAACCGAGATCCTCAAAAGTTAGAGTCAAAAGACAAGAACACAAAGTTTGGACTTGTCGAAGATGCTTAGAGGAATTCATGTCGAGACGCGAACTAACAGACCACACGAAAACCTACCACCCCGAAGAAAACAAAGAAATACAACACACTTTTAAATTCGACGAAGAACAAGAAATATACACTTGCTCGACTTGCTCAGCGGAATACCAAAGCCAAAAAGAAGTAGAAGAACACATCTCGAAAATCCACGAAGAGTTCTACACCTGTGACGTATGTCAACACACCGCGACCAAAGCTTACAAGTTCGCCCTTCATATGAAAATCCACAGTGCGGACGATACGTACACGTGTCCTTTATGTAGCTACAACACACTTAGAAGAACCTGTCTACAGACCCACATAAACAGAGTCCATTACCACAAGTTCTATTACACTTGTCCTACTTGCGGGAAAGGATTCAACGATTCCGTTATTTTCAAAGAACATAACAACGAACATTTAGGTATAAAACCATTCGTTTGTGTCGTATGTAATAAGTGTTTTGTTTATTCGCGGTACATGCTGATACATCAGACGAGATACCACACGGTTCACATCGAAGGTACCTTACATAAAACCCAATGCAGCATTTGTCTGAAAGTGTTTAGTAAAGTAACTACCTTGTTGAAACATATTACAACAAAACATAGTGCTAATCCAGCCGAAAAGCCCGAGAAGCGCCATCTATGCGACATGTGCGGAAAGGGCTTCGGAACTTCtgataaattaaaaattcactATAGGATACATACTGGAGATAAACCGTTTGCTTGTAGATATTGCGAGAAACGATTCACGAAAAAGGATTATCTTATTATGCACGAACGGGTCCATACGGGAGAGAAACCTTATCCTTGCATGTACTGCGGGAAATGTTTCAACCAAGCTGCCTCTCTAAGGATCCACGTTCGGGGACATACCGGGGAAAGACCTTATATATGTCAGATTTGTAATGGGGGGTATATTTCCAGGGGTTCTTTGAATTTACATCTGAAAATTTGCAACGGAATAGCTgtcatgtaa
- Protein Sequence
- MKVDDKIFVVDNITPPSRKAKELAPRKVKIKLEEDDEFTEEEFSDEDYTPPGYKKKKNKCPKEKKPPKPRSSKVRVKRQEHKVWTCRRCLEEFMSRRELTDHTKTYHPEENKEIQHTFKFDEEQEIYTCSTCSAEYQSQKEVEEHISKIHEEFYTCDVCQHTATKAYKFALHMKIHSADDTYTCPLCSYNTLRRTCLQTHINRVHYHKFYYTCPTCGKGFNDSVIFKEHNNEHLGIKPFVCVVCNKCFVYSRYMLIHQTRYHTVHIEGTLHKTQCSICLKVFSKVTTLLKHITTKHSANPAEKPEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFACRYCEKRFTKKDYLIMHERVHTGEKPYPCMYCGKCFNQAASLRIHVRGHTGERPYICQICNGGYISRGSLNLHLKICNGIAVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00912499;
- 90% Identity
- iTF_00911365;
- 80% Identity
- -