Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: RREB1
Assembly: GCA_963978555.1
Location: OZ021715.1:8551493-8557217[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00024 0.037 15.6 2.6 1 23 56 78 56 78 0.98

2 16 0.00018 0.027 16.0 0.3 1 23 91 113 91 113 0.98

3 16 5.2e-05 0.008 17.7 6.4 1 23 119 141 119 141 0.98

4 16 0.35 55 5.7 0.1 1 23 199 223 199 223 0.84

5 16 0.00011 0.018 16.6 1.4 2 23 229 251 228 251 0.90

6 16 0.12 19 7.1 2.4 1 19 297 315 297 318 0.92

7 16 0.0085 1.3 10.8 0.1 1 23 439 461 439 461 0.98

8 16 5.1e-06 0.00079 20.9 0.8 1 23 470 492 470 492 0.99

9 16 0.0002 0.031 15.9 2.8 1 23 498 521 498 521 0.97

10 16 0.00043 0.066 14.8 3.0 1 23 885 908 885 908 0.97

11 16 0.0001 0.016 16.8 0.4 2 23 1113 1134 1112 1134 0.97

12 16 0.11 17 7.3 6.3 1 23 1140 1163 1140 1163 0.97

13 16 0.11 17 7.2 6.2 1 20 1190 1210 1190 1214 0.95

14 16 0.088 14 7.6 0.5 1 23 1263 1286 1263 1286 0.96

15 16 0.014 2.2 10.0 0.4 3 23 1333 1353 1331 1353 0.93

16 16 0.0031 0.48 12.1 6.0 1 23 1359 1381 1359 1381 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00024	0.037	15.6	2.6	1	23	56	78	56	78	0.98
2	16	0.00018	0.027	16.0	0.3	1	23	91	113	91	113	0.98
3	16	5.2e-05	0.008	17.7	6.4	1	23	119	141	119	141	0.98
4	16	0.35	55	5.7	0.1	1	23	199	223	199	223	0.84
5	16	0.00011	0.018	16.6	1.4	2	23	229	251	228	251	0.90
6	16	0.12	19	7.1	2.4	1	19	297	315	297	318	0.92
7	16	0.0085	1.3	10.8	0.1	1	23	439	461	439	461	0.98
8	16	5.1e-06	0.00079	20.9	0.8	1	23	470	492	470	492	0.99
9	16	0.0002	0.031	15.9	2.8	1	23	498	521	498	521	0.97
10	16	0.00043	0.066	14.8	3.0	1	23	885	908	885	908	0.97
11	16	0.0001	0.016	16.8	0.4	2	23	1113	1134	1112	1134	0.97
12	16	0.11	17	7.3	6.3	1	23	1140	1163	1140	1163	0.97
13	16	0.11	17	7.2	6.2	1	20	1190	1210	1190	1214	0.95
14	16	0.088	14	7.6	0.5	1	23	1263	1286	1263	1286	0.96
15	16	0.014	2.2	10.0	0.4	3	23	1333	1353	1331	1353	0.93
16	16	0.0031	0.48	12.1	6.0	1	23	1359	1381	1359	1381	0.98

Sequence Information

Coding Sequence: ATGGAATCACCTTCGTCTCCTAACGCAGTATCCAAGGAAAAAGCTAATCAAAGTGATTCTGGAATATTTTCAACGACTACAAATACCACCATCGATCAGACGGATCATTCAAAGGCATTTGACAGCGGTGACAACAGAAGCGATTGTTCATCGCCCGAACGAAAATACTTTTGCCCAATTTGCGAAAAAATGTTGACGTCGCAACACAAATTCACGCTACACATACGATCTCACAACAACGAAAACGAAACGCAAGACACCGAAAAAGGTTTCACTTGTAGAATATGCTCTAAAGTGCTGAGTTCCAATAGCAGTCTAGATAGACACGTACTTGTTCACAGCGGGGAACGGCCTTTTCACTGCAAATATTGCGGAGACACTTTTACGACCAACGGTAATATGCACAGACACATGCGGACGCATTCCCAGCGCAACGAAAGCAGCTACGAATCCGACGGTAGCATAGACAGCGGTAGTTCCAAAAGCACTGAATTTAATAAcaataaagttgaaaaaaataaaagaaaaaacgaAAACTTCGATGTCAGCgagaaaaaaattaagttaCAATTAGAACCTGACAGTCCTCATGCTTACCAATGTCCCGTTTGCGAAAGGAGCGATTTTAACTCGGCACTTAATCTTGAAGCTCATTTAGAAGATAACCATCCCGACTATCCCATCAAATGTCACATTTGTAAAGAAACTTTCACTAACAGTAAACTTTTAAATGCACACAAGACGGCCGTTCATGAAAATGCAACAAATAAACAGCCCGTCATTGGATTTAAAGATTTAACTTTTGTCGATTTTTCTAGCGAAAAATTTCCGTATATTGCAAGAAGAGAATGCGAGATGAATTTACACAAAGCTTCTACAGGCTTAAAGTTTCAGTGCACATATTGTAATAGAGCTTTTCCGTGCTCTAACTCTTTAAACATCCACGAATCTCATTGCAAATCTCCGTCGTCTCTTAAAGACAGCAACATGAATATTTCGCAACCAGATATAAGAAGAATGGAATTTTTTAATCGATTAAATTTGGTGGATAATTCACCAGAAAAACAAACTGTAACTGCTTTTACGTTTAACAAACTGAAAGAGCACTTGGATAGAGGTGTTGATAATACCAAAGATTTAGCTGACATTCAGTCGATTTTGTCCaacattaatttgaaaaaactgcAAACAAATCAAGCAGACTTACACGTACAAAAATCGAAAGAAATCCTCGACGATTTTCAAAAGAACGAAGAAGAAGAATCTCAAGATATTTTTGCCGTTGAATTCAGAAAAATGAAACTAAGAGGAGAATTTCCTTGTAGATTATGTCCGGAAATATTCCCAAATTTGAGAGCCTTAAAAGGACATAATAGAAAACACTTAGTCGGTAACACAAACGGAACTTATTACTGCAATATGTGTCCGTATTCTTCCATAGACAAAAACGCACTTACCCGTCATATGCGCACGCACAATGGCGATCGACCCTACGAATGTTCTATTTGTAACTACGCTTTTACCACTAAAGCCAATTGCGAACGACATTTGCGCAATAGACATTATAAATCCACCAGAGAAGAAGTGAAAAAATCCATAATCTATCACCCGTCAGAAGATCCGACCAACGAAGAACTGAACAAGCTAGTTACCAAAGAAGATCCAAAGAAAACTACTTTGGCAGAAGAAAAAACTACCTTCTCTCCAAAGTTTACGGATATAATGAGAAATAATACGATTAATTTAAAACCGGAACTCCCAACTGGCTATCCCGATTTGCAGAATTTAAAACCAACGAAACCGTTCTCTCACATCAACGAAACTTTGAGACCGTTGACAGTACCCAATGACATTCCTTTTATACATCCATACTCACCAACTTTCACCAACAAAATTCAAGTAAAAGATATAAATACCTTAAAAATGTCCAGCTACGATGATGAATCTGAAGACGAATATttcgaagaagaagaagatcaACCATTAGATCTAGTTTTAGACTTGAGTAAGAAAAAATCTCCTGAAATATTAGAAAGGAACGACGATGATAAACCGCAAGATTTAACTAAAAAAGCCGCAGCTCCAGTACAGCAACAATTACCACCGAATATGGGCCAGATCTTTGCAGCTCAACAATTGCTCAAAACTCCTCCAAAAATAGACGCAGCTGCTTTATACGCTACGCAGCTAGCTTTTTACAGAAGTAGCTTCCCGCTTCCAAATTGGCCAGGATTGCCAATAAACCCCTTATTCTTTTCAGCTGTTCCACCTACTTTACAGCATAATACCCAAGAGCTCAAAGAGCGTATGCAAAGATTTCAGTTATGCGGTGGATCGATGATATCCGACGAAGTTAAAAATATGCAGTTACAACGATCTTTTCCTGGCTCTCCTCCTTATCCTAACGGTTATAGACTAGAACCTAAACCTGAagctattttggaaaataactTTTCAACGCCGAAAAAAACCGAAGAACCCTTAAGTTTAAATATCGAGCCTAATTTTCATGATAACCTCAATAAATTACACAGTCCCATTTCTTCGAATAAACCCGATATGATGCATTCTCCTAACGCTGTTAAAATGGTGATTAAAAACGGCGTTTTAATGCCTAAGCAAAAGCAAAGAAGATACAGAACAGAACGTCCTTTCACCTGCGAACACTGTTCAGCTCGATTTACTTTACGTTCCAATATGGAAAGGCATATCAAACAACAACATCCTCAGTATTGGTCTCAAAGACAACGAAGCGCTGTCGGTAATCCCGGAAAGAAGCCCCAAATCGGCGTTAAAACAGATTATTGTGACATAAACATTCCCAATCCTACCTACGAATTCAACAAATACCAAAAATTCGATGATACCAAAGAAATTTTTAATGATAAGCTCAAATTTTCTCTGTTATCACAACAACTTagtaaaattgataataaaaaagaagaagatgaaGATTGTGCTCTAGTTATAGACGAACACGATGAAAAACTTGACTCGAGGATGACAGAAGAAAACGGTCTCGACGACCAAGAGGAACAAGAATGCAACGACGAAAGCGATACTCACAGAACGTCTAAAATTGAGGAGAGTCCAGATCTCGTACCTGTATCACGATTACTCGATAACGCTTCACAACAACAAtttaaagaatttttcaaaagggATGGCGAAGAACACGAAGTCGGATTGGCTAGCGAAGAGGATGAAGAAGGTCTTGTTGCCAGTGGAAGTACTAGCGAAGGGAACATTTCTGGAACAGATGAAAATAAaTCAGAATCCGAAGTAATTCAGCCCGTTAAGAAAAAATCTGCTTACTCGCTGGCTCCAAATCGCGTCAGCTGCCCTTACTGCAGCAGAAAATTTCCATGGAGTTCCTCTTTGCGTCGTCACATCCTAACCCACACAGGtcaaaaaccattcaaatgtagTCACTGTCCGTTACTTTTTACAACAAAGTCAAACTGTGATCGCCATCTATTGAGAAAACACGGCAACGCCGCAACAACTATTCCAAACGATGTATCGAATAACGCTAATTATTTGATGAGAAATGTACCCGAGCGACCATTTAAGTGTTCGCATTGCCCCAGCAGTACGTTTTCAACttattctaacctaaaaaaacaCATAAGCTGTAAACATTCTACTAACTTACAAGGCGACGATATTAAAGCACAAGGTTATGAAGCAGGAAGTTCTGAGGACGAAAAATTTCCCAAAAGCGACTGGGAAAAACCGTCTTCTTATAAACTTCCCGATTGTACTGTACAAAATTCTGACCTTCCATACAAATGCCATTTATGCGAAGGTTCGTTTGCAGAACGCCAAGATGCTTTAGATCACATTCGAGAAAGACATGTTCCCGAATACGAATTACTCATGTCAAAAAACGCTCTGGAAACTAACGGGCCACCCCAAGAAGAGCAGATGAAtaacgatgatgatgatgtggaAATTCGCGGTAAATTTCCCGACTACTCTAACAGAAAAGTAATTTGCGCATTCTGTATGCGCCGATTTTGGTCAGCAGAAGATTTGAGGCGACACATGCGCACTCATACCGGCGAAAGACCTTTTAGTTGCGACATCTGCAAACGGAGGTTCACACTAAAGCACAGCATGCTTCGGCACAGAAAAAAACACAATGTTAACTTTGAACACGATGCCGCTGTTAGCGACGAAGATGGGAATAACGGATCTTCTCCTTCCTACGTAAAGAGCGAATGCAATTCCACACAAAAAACTGACGAATCCGAAGGTACCGAGAGCGCGGATTTAATTGGTAATCTTTTAGGTTTAAGAGGCTCTATCATAGATAAGGTATTGGCAGCATCTGCGGATGATGCAGCCAAACTTTTGGGAGTTAAAAACGGCGCTaaagaatag
Protein Sequence: MESPSSPNAVSKEKANQSDSGIFSTTTNTTIDQTDHSKAFDSGDNRSDCSSPERKYFCPICEKMLTSQHKFTLHIRSHNNENETQDTEKGFTCRICSKVLSSNSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSQRNESSYESDGSIDSGSSKSTEFNNNKVEKNKRKNENFDVSEKKIKLQLEPDSPHAYQCPVCERSDFNSALNLEAHLEDNHPDYPIKCHICKETFTNSKLLNAHKTAVHENATNKQPVIGFKDLTFVDFSSEKFPYIARRECEMNLHKASTGLKFQCTYCNRAFPCSNSLNIHESHCKSPSSLKDSNMNISQPDIRRMEFFNRLNLVDNSPEKQTVTAFTFNKLKEHLDRGVDNTKDLADIQSILSNINLKKLQTNQADLHVQKSKEILDDFQKNEEEESQDIFAVEFRKMKLRGEFPCRLCPEIFPNLRALKGHNRKHLVGNTNGTYYCNMCPYSSIDKNALTRHMRTHNGDRPYECSICNYAFTTKANCERHLRNRHYKSTREEVKKSIIYHPSEDPTNEELNKLVTKEDPKKTTLAEEKTTFSPKFTDIMRNNTINLKPELPTGYPDLQNLKPTKPFSHINETLRPLTVPNDIPFIHPYSPTFTNKIQVKDINTLKMSSYDDESEDEYFEEEEDQPLDLVLDLSKKKSPEILERNDDDKPQDLTKKAAAPVQQQLPPNMGQIFAAQQLLKTPPKIDAAALYATQLAFYRSSFPLPNWPGLPINPLFFSAVPPTLQHNTQELKERMQRFQLCGGSMISDEVKNMQLQRSFPGSPPYPNGYRLEPKPEAILENNFSTPKKTEEPLSLNIEPNFHDNLNKLHSPISSNKPDMMHSPNAVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRQRSAVGNPGKKPQIGVKTDYCDINIPNPTYEFNKYQKFDDTKEIFNDKLKFSLLSQQLSKIDNKKEEDEDCALVIDEHDEKLDSRMTEENGLDDQEEQECNDESDTHRTSKIEESPDLVPVSRLLDNASQQQFKEFFKRDGEEHEVGLASEEDEEGLVASGSTSEGNISGTDENKSESEVIQPVKKKSAYSLAPNRVSCPYCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTIPNDVSNNANYLMRNVPERPFKCSHCPSSTFSTYSNLKKHISCKHSTNLQGDDIKAQGYEAGSSEDEKFPKSDWEKPSSYKLPDCTVQNSDLPYKCHLCEGSFAERQDALDHIRERHVPEYELLMSKNALETNGPPQEEQMNNDDDDVEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICKRRFTLKHSMLRHRKKHNVNFEHDAAVSDEDGNNGSSPSYVKSECNSTQKTDESEGTESADLIGNLLGLRGSIIDKVLAASADDAAKLLGVKNGAKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459196;
90% Identity: iTF_00911335;
80% Identity: -