Basic Information

Insect: Diorhabda carinata
Gene Symbol: RREB1
Assembly: GCA_029229535.1
Location: CM055258.1:24394664-24409703[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00024 0.022 15.7 2.6 1 23 81 103 81 103 0.98

2 16 0.00032 0.029 15.3 0.2 1 23 116 138 116 138 0.97

3 16 5.4e-05 0.0049 17.7 6.4 1 23 144 166 144 166 0.98

4 16 0.016 1.4 10.0 0.1 1 23 217 241 217 241 0.90

5 16 0.00012 0.011 16.6 0.4 2 23 247 269 246 269 0.91

6 16 0.8 73 4.6 1.8 1 19 316 334 316 336 0.85

7 16 0.0088 0.8 10.8 0.1 1 23 460 482 460 482 0.98

8 16 5.3e-06 0.00048 20.9 0.8 1 23 491 513 491 513 0.99

9 16 0.00036 0.033 15.1 2.0 1 23 519 542 519 542 0.97

10 16 0.00044 0.04 14.9 3.0 1 23 884 907 884 907 0.97

11 16 0.0001 0.0095 16.8 0.4 2 23 1096 1117 1095 1117 0.97

12 16 0.11 10 7.3 6.3 1 23 1123 1146 1123 1146 0.97

13 16 0.12 11 7.2 6.2 1 20 1173 1193 1173 1197 0.95

14 16 0.14 13 7.0 0.5 1 23 1246 1269 1246 1269 0.95

15 16 0.015 1.4 10.1 0.4 3 23 1316 1336 1314 1336 0.93

16 16 0.0032 0.29 12.1 6.0 1 23 1342 1364 1342 1364 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00024	0.022	15.7	2.6	1	23	81	103	81	103	0.98
2	16	0.00032	0.029	15.3	0.2	1	23	116	138	116	138	0.97
3	16	5.4e-05	0.0049	17.7	6.4	1	23	144	166	144	166	0.98
4	16	0.016	1.4	10.0	0.1	1	23	217	241	217	241	0.90
5	16	0.00012	0.011	16.6	0.4	2	23	247	269	246	269	0.91
6	16	0.8	73	4.6	1.8	1	19	316	334	316	336	0.85
7	16	0.0088	0.8	10.8	0.1	1	23	460	482	460	482	0.98
8	16	5.3e-06	0.00048	20.9	0.8	1	23	491	513	491	513	0.99
9	16	0.00036	0.033	15.1	2.0	1	23	519	542	519	542	0.97
10	16	0.00044	0.04	14.9	3.0	1	23	884	907	884	907	0.97
11	16	0.0001	0.0095	16.8	0.4	2	23	1096	1117	1095	1117	0.97
12	16	0.11	10	7.3	6.3	1	23	1123	1146	1123	1146	0.97
13	16	0.12	11	7.2	6.2	1	20	1173	1193	1173	1197	0.95
14	16	0.14	13	7.0	0.5	1	23	1246	1269	1246	1269	0.95
15	16	0.015	1.4	10.1	0.4	3	23	1316	1336	1314	1336	0.93
16	16	0.0032	0.29	12.1	6.0	1	23	1342	1364	1342	1364	0.98

Sequence Information

Coding Sequence: ATGCAAGGGACCGCTCTGATGCCTCACAACCCCCAACAAGGCTTCCCACCTCCACCAGGATCTACCATTTCAGACATGGAATCACCTCCATCTCCAGACGCCGTATCCAAGGAAAAAGCGAATCGCAGCGATTCCGGTATATTCTCTACCACCACAAATACCACAATCGATCAAACGGATCATTCGAAAGTATTCGATAGCGGCGACAACAGAAGCGATTGTTCTTCGCCCGAACGTAAATATTTCTGTCCCATATGCGAAAAAATGTTGACCTCCCAACATAAATTCACTCTTCACATACGATCTCACAACAACGAAAACGAAACGCACGATTCCGAAAAGGGCTACATCTGTCGGATCTGTTCCAAAGTATTAAGTTCGAACAGCAGTCTCGATAGACATGTTCTAGTACACAGCGGAGAACGTCCTTTCCATTGCAAATATTGCGGAGATACGTTCACCACAAACGGCAACATGCACAGACACATGAGGACGCATTCTCAAAGACACGAAAGCAGCTACGAATCCGACGGTAGCTTAGACAGCGGCAGTTCCAAAAGCACCgaatacaacaacaacaaaatcgaaaagaacaaaagaaaaaatgaaaacgtAGACGTCGGggagaagaaaattaaaatagaaaacttcCAATGTCCCGTTTGCGAAAGAACCGATTTCAATTCGGCGGATAATCTCGAAGCTCATCTAGAAGACAATCATCCGGATTATCCGATTACATGTAATATTTGTAAGGAAACTTTCACGAATAGTAAACTTTTGAACGCTCACAAGAGCGCCGTACACAATAATTCGACGCCTAAACAACAACCCGTAATCGGTTTTAAAGATTTAACTTTCGTCGATTTTTCCAGCGAAAAATTCCCGCATATCGCTAGAAGAGAATGCGAAATTAATTTACATAAAGCTTCTGCCGGTTTGAAATTTCAATGCACTTATTGCAGCAGGGCCTTTCCTTGTACGAATTCTCTAAACATACACGAATTCCATTGTAAATCTCCTGGGACTAAAGGAAACGATTCGAGTTTAAACGTTTCTCAACCTGATATAAGAAGAatggaattttttaatagattgaATCTTGTGGATAATTCCCCGGAAAAACAAACAGTTAACGCTTTTACTTATAACAAATTGAAGGAACATTTAGATAGAGGGGTCGATAATAGTAAAGATTTAGCTGATATACAATCGATTTTATcgaatattaatttgaaaaaattacagaCGAATCAAACGGATTTTAATACGCAAAAATCTAAAGATGTTTTAGAAAACGATTTCCAAAAAAACGAAGAGGAAGAATCGCAAGATGTTTTCGCTgtggaatttagaaaaatgaaattacgaGGTGAATTCCCTTGTAGATTATGCCcggaaatatttccaaatttaagaGCTTTAAAAGGACATAATAGGAAACATCTTGTTGGTAATAATAACGGTACTTATTACTGCAATATGTGTCCTTATTCTTCAATTGATAAAAACGCACTTACGCGTCATATGCGTACACACAACGGCGATCGTCCTTACGAATGCGCTATTTGTAATTACGCTTTTACTACAAAAGCTAATTGCGAAAGACATTTACGTAATAGACATTATAAATCAACAAGAGAAGaagtgaaaaaatcaattatttatcacCCTTCCGAAGATCCTACAAACGAAGAACTTAATAAATTAGTAACTAaagaagaaactaaaaaaattgtatctataacagaagaaaaaattaatttctctccCAAATTATCAGATATAATGAGAAAACCTGTTTTTCccgatttacaaaatttaaaaacaacaaaatcgtTTCCGCACGAAAATATAACAGATTACCACCAAATACAAAGCGAAAACAATTTCACACCCCCATACCCCAcgttttctaataaaattcaaGTAAAAGACATAAAtacgttaaaaataaataattacgaaACTCGATCTGAAGAAGAATATATAGAagatgatgaagatgatgaagaACCGTTAGATCTCGTTTtagatttaagtaaaaaaaaatctacgGATTTATTAGATAAAGATGACGAAGATAAACCACAAGatttgactaaaaaaactttacCCCCGATACAACAACAAATATCCCCGAATATAGGACATATTTTCGCGGCTCAACAACTACTCAAATCTCCTCCGAAATTAGACGCCGCGGCTTTATACGCCACACAACTAGCTATATATAGAAGCGGTTTTCCGATACCAAATTGGCCTGGATTACCTataaatccattatttttctCAGCGGTACCGCCTAGTTTACCTCACAATACCCAGGAATTGAAAGAACGTATGCAGAGGTTCCAATTATGCGGTGGTTCGATGATATCGGACGAAGTTAAAAATATCCAATTGCATCGTGGTTTCCCGGATAGATTGGAACAAAGATCCGAAGTGGTTTATTCCACTCCGAAAAAACCAGAAGAACCTTTAAGTTTAAATATCGAAAGTAATTTTCAAGATAACAAATTACAAAGTCCGATTTCGTCGAATAAACCACCGGATGCGATGCATTCCCCCAACGCCGTGAAGATGGTTATCAAAAACGGGGTTTTGATGCCTAAACAGAAACAGAGAAGATATAGAACTGAACGTCCTTTTACCTGCGAGCACTGTTCGGCGCGATTTACTTTGAGATCGAACATGGAGAGACACATCAAACAACAACATCCGCAGTTTTGGTCGCAAAGACAACGCAGCGCCGTCGGTAATCCGGGAAAGAAACCCCATGTAGGAATAAAACCGGATTTTTGTGATATTAATATACCTAATCCTATCTACGAATTcaacaaataccaaaaatttgaCGATACCAAAGATGATAAGCtcaaattttctctattatctCAACAACTTTGTAAAATCGATAATAGGAAAGAAGAAGACGAAGATTGCGCTCTGATTATAGACGAGCACGAAAGTAAAATCGATGAAATCGAACAAGAAGACGAAAAACCGAACGTGAAAACGTCGAAAAGCGAAGAAAATTCCGATCTAGTGCCCGTATCTAGATTATTGGATAACGCCTCCCAACAacaatttaaagaattttttaaaagagaaGGTGAAGAACACGAAGTCGGATTAGCTAGCGAAGAAGACGAGGAAGGTCTAGTAGCCAGCGGTAGTACTAGCGAAGGAAACGTTTCCGGTACAGACGAAAATAAatCTGAATCAGATGTGGTTCAGCCGGTGAAGAAAAAGTCCGCTTACTCCCTGGCGCCGAACCGCGTGAGTTGCCCGTATTGCAGCAGGAAATTTCCTTGGAGTTCTTCGTTGCGTCGTCACATCCTGACCCATACGGGACAGAAACCATTCAAATGCAGCCACTGTCCGTTACTTTTCACGACGAAATCGAACTGCGATCGCCATCTATTGAGAAAACACGGTAACTCGGCAACGACTATACCCAACGACGTTACCAACAACGCCAATTATTTGATGAGAAACGTACCGGAACGTCCGTTTAAATGTTCCCATTGTCCGAGCAGTACGTTCTCGACTtattcgaatttgaaaaaacacaTAAGTTGCAAACATTCCACGAATTTACAAGGCGAAGATATCAAAGCTCAAGGCTACGAAGCGGGCAGTTCGGAAGACGAAAAACTACCCAAAAATGATTGGGATAAACAAACGGCTTACAAACTTCCCGATTGCGCTATACAAAATTCCGATTTACCTTACAAATGCCATTTGTGCGAAGGTTCCTTCGCCGAAAGACAGGAAGCTTTGGATCACATTCGAGATAGACACGTGCCCGAATACGAGCTTCTGATGTCGAAAAACGCCCTGGAAAGTAACGGACCCTCGCAAGAAGAACATATTAATAACGACGACGACGACGTGGAAATCCGAGGAAAATTTCCCGATTATTCCAATAGGAAAGTGATTTGCGCTTTTTGTATGCGTCGATTTTGGTCGGCGGAAGATTTGAGAAGACACATGCGCACCCATACCGGAGAAAGACCTTTCAGCTGCGACATCTGCAAGAGAAGATTCACACTAAAACACAGTATGCTGCGACATAGAAAAAAGCACAACGTCAATTTCGAACATGACGCTGCAGCTAGCGACGAAGATGGTAATAACGGTTCATCGCCTACGTACTCGAAAAGAGAATGCAATTCGACGGTGAAGACGGACGAATCCGAAGGTACCGAAAGCGCGGATTTGATCGGTAATCTTTTAGGTTTAAGAGGATCTATTATAGATAAGGTATTGACCGCATCAGCGGATGATGCGGCTAAACTTTTAGGCGTTAAAAACGGCGTCaaagaataa
Protein Sequence: MQGTALMPHNPQQGFPPPPGSTISDMESPPSPDAVSKEKANRSDSGIFSTTTNTTIDQTDHSKVFDSGDNRSDCSSPERKYFCPICEKMLTSQHKFTLHIRSHNNENETHDSEKGYICRICSKVLSSNSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSQRHESSYESDGSLDSGSSKSTEYNNNKIEKNKRKNENVDVGEKKIKIENFQCPVCERTDFNSADNLEAHLEDNHPDYPITCNICKETFTNSKLLNAHKSAVHNNSTPKQQPVIGFKDLTFVDFSSEKFPHIARRECEINLHKASAGLKFQCTYCSRAFPCTNSLNIHEFHCKSPGTKGNDSSLNVSQPDIRRMEFFNRLNLVDNSPEKQTVNAFTYNKLKEHLDRGVDNSKDLADIQSILSNINLKKLQTNQTDFNTQKSKDVLENDFQKNEEEESQDVFAVEFRKMKLRGEFPCRLCPEIFPNLRALKGHNRKHLVGNNNGTYYCNMCPYSSIDKNALTRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHYKSTREEVKKSIIYHPSEDPTNEELNKLVTKEETKKIVSITEEKINFSPKLSDIMRKPVFPDLQNLKTTKSFPHENITDYHQIQSENNFTPPYPTFSNKIQVKDINTLKINNYETRSEEEYIEDDEDDEEPLDLVLDLSKKKSTDLLDKDDEDKPQDLTKKTLPPIQQQISPNIGHIFAAQQLLKSPPKLDAAALYATQLAIYRSGFPIPNWPGLPINPLFFSAVPPSLPHNTQELKERMQRFQLCGGSMISDEVKNIQLHRGFPDRLEQRSEVVYSTPKKPEEPLSLNIESNFQDNKLQSPISSNKPPDAMHSPNAVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRSAVGNPGKKPHVGIKPDFCDINIPNPIYEFNKYQKFDDTKDDKLKFSLLSQQLCKIDNRKEEDEDCALIIDEHESKIDEIEQEDEKPNVKTSKSEENSDLVPVSRLLDNASQQQFKEFFKREGEEHEVGLASEEDEEGLVASGSTSEGNVSGTDENKSESDVVQPVKKKSAYSLAPNRVSCPYCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTIPNDVTNNANYLMRNVPERPFKCSHCPSSTFSTYSNLKKHISCKHSTNLQGEDIKAQGYEAGSSEDEKLPKNDWDKQTAYKLPDCAIQNSDLPYKCHLCEGSFAERQEALDHIRDRHVPEYELLMSKNALESNGPSQEEHINNDDDDVEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICKRRFTLKHSMLRHRKKHNVNFEHDAAASDEDGNNGSSPTYSKRECNSTVKTDESEGTESADLIGNLLGLRGSIIDKVLTASADDAAKLLGVKNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01106630; iTF_00911335; iTF_00736065;
90% Identity: -
80% Identity: -