Gnym032474.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- Hr39
- Assembly
- GCA_963978555.1
- Location
- OZ021716.1:12017701-12026897[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.69 9.5e+03 -3.2 7.1 127 191 183 248 97 310 0.51 2 4 1.1e-08 0.00016 22.4 0.1 1 34 379 412 379 449 0.66 3 4 0.06 8.2e+02 0.3 0.0 79 118 429 469 402 488 0.63 4 4 1.5e-72 2e-68 232.9 0.1 205 408 510 708 484 708 0.96
Sequence Information
- Coding Sequence
- ATGGCCACCGATATGCGGTCTCCTAACGTCTCCGTCACGCCCATCAATGTAGAACCTTATCCGTCTCCAGGAGAGCCCCCGCAAAGGGCAAGGAGTGCCCCTCATCCAGCAGCTTTAATTTCTAATGGACTAGTAGATGTCTTAGACAGCTCTGATGCAGAAGTAGCAAGGATAGATTTTCAATCTGTCAATATGAGGTCGAAAAAGACGCTAGAGGACATTCCGAGGCCGATGAGTTGGGAAGGGGAACTTTCTGATGGGGGAAGAGACGGCATGTGCATCGATGGGGAAAATTCAGCACAGGTACCTGAAAATCTTTCACTTCCCCAATCAAAACCACCTTCGATAAGTGATTCTAAAGAAAGTCCCATTCTTAGACTGAAGCAACCTCCCATGGGAAACTATTCATTGCATAGTACACCGAGTAACTCACCTCTACTTAGCCAACGACATCCTGTAACAGgAGTTCCAATAATTAGTCACAAAGATCTCATGATGCACAAAGGTCTTAACGTACCGCCGACTCCCTCGCCCGATTCAGCCGTCCACTCTGCCTACAGCGTTTTTAGTTCGCCAAATCAGTCGCCATTAACGCAACGCCACGTAACTCTAACACCGAATCTTAGTAGGAACAACAGCGACGCCTCGCATTCGAGTTGCTGTAGTTATAGCAGCGTTTCCGTTTCCGTGTCGCCCACGCAACAGTTTTCGCCGACACACAGCCCAGTACAGGGTCGACACATGCCTAATATCCACAACAGTCCATTACACCAACATAATTTAATCTACAGGAGTCTACAGGACGAAAATCTACAATATTCCACAGAACAAGATGCTTTAGACGAATCTGAAGATAAAACTGGAATTATACACGCATCTTTGCCAGCCCAGACAGGAATATCTCGACAACAGCTTATCAACAGTCCATGCCCAATTTGCGGTGATAAAATATCAGGCTTCCATTACGGCATTTTTAGTTGCGAATCGTGCAAAGGTTTTTTCAAGAGAACCgtacaaaatagaaaaaactacGTGTGTCTTAGGGGAGCTCAATGTCCAGTTACTGTAGCAACTAGAAAAAAATGTCCTGCCTGTCGATTTGAAAAGTGTTTACAATGCGGAATGAAATTAGAAGCCATACGTGAAGATAGAACCAGAGGTGGTAGGTCAACGTATCAATGTAGTTACTCCTTGCCACCTTCTCTGACTAATCATTCGGATTTAAGAGCCAGTGCTACCGATTTAAGACAGTTGGGAGACAGTCACTTAGGTTTGACTGTTAAACTAGAACCTCCGGATCCTCAAATGTCACATGCTAAACGTAATAATATGTTCCCAGGATCAAAAGGAGTTCCTCCATTATTACAAgaAATAATGGAAGTGGAACATCTGTGGCATTACAACGAATCCGAATTGAACAAACTAAGCACCGACGGTCATTTGGGTAAAGAAGGTTCCAGTGGAGCAGTTCACAATCTGTCCACTCACCCTCTTTTGGCCGGGACTGCATTGGCTGGTTCAGCAGACACAAATCCAGATTTTGTAGCTAACCTTTGCAATATAGCCGATCATAGGCTTTACAAAATCGTCAAATGGTGCAAGAGTCTTCctctatttaaaaatatttcgATCGACGATCAAATATGCCTCCTTATAAATTCTTGGTGTGAACTACTCTTATTTTCTTGTTGTTTCCGATCGATGGCGACACCAGGAGAAATAAGAATATCCCTAGGGAAAAGTATAACGTCGGCGCAAGCGCGTGAGATGGGTATGCAGGCGTGTATAGAAAGAATGTTGAACTTTACAGAACAACTTCGAAGATTAAGAGTTGATCAGTATGAATATATCGCTATGAAGGTGATAGTTCTATTAACTTCTGATACTTCTGAACTCCGAGAAGCTGAAAAAGTAAGATTGTCTCAAGAGAAAGCGTTAAAAGCTCTTCAAGATTATACTTTATCGCATTATCCTGAAAGTCCAGCTAAATTTGGAGAATTACTATTACGAATTCCCGAACTACAACGAACATGTCAAgtTGGCAAGGAAATGTTAACAATAAAATCAAAAGACGGAGATGGACCGAGTTTTAACCTCCTGATGGAGCTCCTTAGGGGGGACCACTGA
- Protein Sequence
- MATDMRSPNVSVTPINVEPYPSPGEPPQRARSAPHPAALISNGLVDVLDSSDAEVARIDFQSVNMRSKKTLEDIPRPMSWEGELSDGGRDGMCIDGENSAQVPENLSLPQSKPPSISDSKESPILRLKQPPMGNYSLHSTPSNSPLLSQRHPVTGVPIISHKDLMMHKGLNVPPTPSPDSAVHSAYSVFSSPNQSPLTQRHVTLTPNLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPVQGRHMPNIHNSPLHQHNLIYRSLQDENLQYSTEQDALDESEDKTGIIHASLPAQTGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAQCPVTVATRKKCPACRFEKCLQCGMKLEAIREDRTRGGRSTYQCSYSLPPSLTNHSDLRASATDLRQLGDSHLGLTVKLEPPDPQMSHAKRNNMFPGSKGVPPLLQEIMEVEHLWHYNESELNKLSTDGHLGKEGSSGAVHNLSTHPLLAGTALAGSADTNPDFVANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMATPGEIRISLGKSITSAQAREMGMQACIERMLNFTEQLRRLRVDQYEYIAMKVIVLLTSDTSELREAEKVRLSQEKALKALQDYTLSHYPESPAKFGELLLRIPELQRTCQVGKEMLTIKSKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753059;
- 90% Identity
- iTF_00735601;
- 80% Identity
- iTF_00735601;