Gnym020445.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- MBD-R2_1
- Assembly
- GCA_963978555.1
- Location
- OZ021710.1:13729382-13735259[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-17 9.2e-13 48.8 0.1 8 75 432 498 428 500 0.93
Sequence Information
- Coding Sequence
- atgggaCGAAAATGTAATGTTGAAAGCTGTCAATCTGATTCAAATCGTTCTCAAGATGTAGGAGTAACATTTCATAAGGTGCCTCCTCATTTGGATATAAGACCTAAGTGGCTATCGCTGTGTAGAATACCTGAAGATAAGAAATTGGTGAAAGTCCTTTATGTATGTTCTAGGCATTTCCTTCGAGCTGATTTTTGTAATTTCAAAGgtaaaaaatatatgttgaaGCAGGGTGTCTTACCAAGTGTGTTTCCATGGGATAAATCAAAACTGGACGCTATTAAAGCAGAATCAAAAAAAGATAAGCCAGTACATATAAAGGAAGAACCTCAGGATGATGGTAAAAGTAATTCAGATGACAAGCAAGAATTTGCAATTGATGgaattaaacaagaaattatagagaatgaaaattcaaatatgGAAACTGATGTGAAACCTGAGCCACAAGAAGAACCTGATGATAAGTCTACCCAAAATTCCAAATTACCATCATCAAATTCTACCTTTCtaaatttcacaataaattCGAGAGCTGAAGcattagattttaacaatgaatGGTTTCCAGCTAAAATAGTAGAAATTGATTATGAAGAAAATGAAGTCTTGATACATTTTGAGaattattcaagtaaatatGATGAATGGATATCTATGGATAGCTCAAGATTACGACCTTTGCAAAATGCAGATGAAAGTGCTGAAACTAGTGTAATTGATGATCCTGTTGCTGATATGGATCCAAATTCAATTATACATAATGCTGCTGAAAAACCAAATGAAATGGAAACTTTTGTGGTGGGGGAAAGGTGCCTTGCTACTTGGAGTAATTCTAAAAAGTTTCCTGCAACAGTTTCTAAAGTTTTGGAAAACAaTTCTTATGAAGTATTATTTGATGATGGgtttgtgaaaatttcaaaaggTAGTTCAATGACTAAAACTCAAGGTAAACCACTTCAATCTAGTCCACTTTTTGATCCCATAAAAAGTAGCAAACAGGAcagaagagagaaaaaaaggaAACATAATGTAGCTACTTTgtttagaaaaagacgtaaacTAGATCATTCGGAAGAGAAGCCTAAGAAAGTATCTACTACAGCAGTAACTAATGTGCCAACACAACTTCCACCTGAAGCAGAACTGCCCCCACTGCAAGAAATACCAATTGTACCAGCTACTCCAGTTGatattgaaaattggaaaccAAGCTGGTACAAAGGAAAACCAGTTGGAATAGAGGCAACACTTCAAACTCAAGATGGTCCAAAAGTGTCTTACATTGTCCCAGATCCTAGGATTCCTCCTGGGTGGAACAAACATATTTTAAGAAGAACAAAAGGCTGTGATGCTGGTAAATGGGATACAATTATTGTCagTCCTGAAAATAAACGATTTAGATCAAAGACAGATGTTATAAAATACATGGAAGAACATCCAAATCACAATTTGAACGaaaaaatgtttgatttttCATTTGTTATGAAAAGAAAACGCAAGCAACCAGCTGTTTCTACTCCAGCAAAATCTTCTGAAAAGGAAAAACCTGTACCTGTGGTTGCACCAATAGAACCAGTTGAACAACCTGAACCAAACAATAAAGAAGAGAAAGATGAAGatgaTTCAAATTCCCTTAAAATTCTCTTTGAAGATGATGCTTACAAATGTCCTATAGAAGGATGTGGTAAAACTTTCAGAAGAGAAAATCTAGCTCAAATGCATGTTAAACATTACCATCCCGAATATACCAAGTTTCTGGATTCAACACCAAATGTTGCTGATTTAGCATATGCAAGAACAGTTGGTGAAAATCTAGATAGATCTCCAGGACCTCAGAAACCTGCATTAAAAACAGCACCGAAGTCATCCACTCCAAAAACTCCCAAGAACTCAGCATCCACTCTAGAAGAAATGCCTGAATTGAAACCACAAATAAAACCTAAATTAGCTCCAGCAAAAACCAAAGATCAAGAAATAATAAAACTGTTGAATACCAAACCATTTAACAAAGAGGAGATTAATGTTCAACAGCCACAAATCTCAGAAGATGCTAGTCCACCTTATTCTGACcaaaaattgaaagaagcaTTAACTAAGAGTGATAGTGTCCCTAAAAAGGAAGAAATAACTTTGAAAACTTTATTGAAGAGTAAACCTTCTGGCATAAAAACTCTACTACCTGTTCATCGACCTCAAACAGAGAATTTAGCAGCTGAACAATTAGATGAAGAACACTACAAACCACCGTCAAAGCGCAAGTCAGCGTTTACAGAAAGTATAGAAATAATAAAAGGTACAGAAAAAACTGAAACTAAATTTCCACCTTCACCTACAAAAGTTAAAACTCCACCATTACCATTACCACCAATGCCATCATTATCACAACAAACATCACAATCTTCTTCTCCATTATGTGCTCCTATTCTTCCTCCTCAAATAGAACCACCTCCTCTATCTATCCCTAGTCCTTCCTCTAATAATGTAATAATTGAAGGCGGAGAAGTTATTAAGATCGTCAGAATGAAACAAGAAGAAATTATTAACTGCACTTGCGGATTTATGGAAGAAGATGGTTTGATGATCCAATGTGAATTATGTCTATGTTGGCAACACGCCTATTGCAACAACATCGAGAGAGAAAGTCAAGTTCCCGATAAGTATGTTTGTTATATTTGTCAAAATCCACTTCGAGAAAGATCGAGCAGAAAATATTATCACGATCAAGATTGGTTGACAAAAGGAGTGCTTCCAGTGGGAAGTTACCATACCAAAGACGATGAAGCCTTACACAAGAGGTTTGACAAATTGAAGAAGTGTCACGATTTGTCAGGAGGATTAATAGAACTTGGAAATTATCAACATAGTTTGAAAATAAAGATGAAGATAGCCGAAGTGAAGAATCATCCAAAATTATACTTGTGGTCAAAACCTTGGGCTAAAAAATGCCTACCTGAAAAAGCCAAACCAGAAATAGAAGATAATAAAACGAAAATAGAGAGTGAAGTTCCAGAATTTCTTAAAAACGACTTTGACGTTGACAAAGAATCTCAAAATGAAAGTTCAATGTTGATGATGCTATTGAAAGATGGTAAAAACGTGATGTCTAAACTTGACGACTTGAATACTCTAATGGACAATAGTCCGATAATACCTCGACCAGAAGCCATTATAGATTCAGCCGACTGTCGATTGAACTTACTAGAACATTTGGTCCACGAATATTCTCTTGTAGAAGAAAGATTAGACGATTTTGAAAGACAACTCAATGTGCTAGAAGAAACGGTTAACGTAGAAAAAGATTTGGAGTATCCAAAAACGAGGAGTACGATGCAGATGCTTATGAGGGATTTGGAGACACTAAAAGAATTTAGCAATAGTTCGGTGTTATAA
- Protein Sequence
- MGRKCNVESCQSDSNRSQDVGVTFHKVPPHLDIRPKWLSLCRIPEDKKLVKVLYVCSRHFLRADFCNFKGKKYMLKQGVLPSVFPWDKSKLDAIKAESKKDKPVHIKEEPQDDGKSNSDDKQEFAIDGIKQEIIENENSNMETDVKPEPQEEPDDKSTQNSKLPSSNSTFLNFTINSRAEALDFNNEWFPAKIVEIDYEENEVLIHFENYSSKYDEWISMDSSRLRPLQNADESAETSVIDDPVADMDPNSIIHNAAEKPNEMETFVVGERCLATWSNSKKFPATVSKVLENNSYEVLFDDGFVKISKGSSMTKTQGKPLQSSPLFDPIKSSKQDRREKKRKHNVATLFRKRRKLDHSEEKPKKVSTTAVTNVPTQLPPEAELPPLQEIPIVPATPVDIENWKPSWYKGKPVGIEATLQTQDGPKVSYIVPDPRIPPGWNKHILRRTKGCDAGKWDTIIVSPENKRFRSKTDVIKYMEEHPNHNLNEKMFDFSFVMKRKRKQPAVSTPAKSSEKEKPVPVVAPIEPVEQPEPNNKEEKDEDDSNSLKILFEDDAYKCPIEGCGKTFRRENLAQMHVKHYHPEYTKFLDSTPNVADLAYARTVGENLDRSPGPQKPALKTAPKSSTPKTPKNSASTLEEMPELKPQIKPKLAPAKTKDQEIIKLLNTKPFNKEEINVQQPQISEDASPPYSDQKLKEALTKSDSVPKKEEITLKTLLKSKPSGIKTLLPVHRPQTENLAAEQLDEEHYKPPSKRKSAFTESIEIIKGTEKTETKFPPSPTKVKTPPLPLPPMPSLSQQTSQSSSPLCAPILPPQIEPPPLSIPSPSSNNVIIEGGEVIKIVRMKQEEIINCTCGFMEEDGLMIQCELCLCWQHAYCNNIERESQVPDKYVCYICQNPLRERSSRKYYHDQDWLTKGVLPVGSYHTKDDEALHKRFDKLKKCHDLSGGLIELGNYQHSLKIKMKIAEVKNHPKLYLWSKPWAKKCLPEKAKPEIEDNKTKIESEVPEFLKNDFDVDKESQNESSMLMMLLKDGKNVMSKLDDLNTLMDNSPIIPRPEAIIDSADCRLNLLEHLVHEYSLVEERLDDFERQLNVLEETVNVEKDLEYPKTRSTMQMLMRDLETLKEFSNSSVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735690; iTF_00910746; iTF_00910904;
- 90% Identity
- iTF_00910746;
- 80% Identity
- iTF_00735690;