Gnig001894.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- -
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000008.1:1864871-1869578[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.25 41 6.1 3.2 2 23 240 262 239 262 0.96 2 20 0.16 25 6.7 6.2 1 23 330 352 330 352 0.98 3 20 7.8e-05 0.013 17.1 0.4 1 23 401 423 401 423 0.96 4 20 0.019 3.1 9.6 0.5 1 20 477 496 477 498 0.94 5 20 1.2 2e+02 3.9 1.6 2 23 539 560 538 560 0.96 6 20 0.00067 0.11 14.2 0.1 1 23 601 623 601 623 0.97 7 20 0.00044 0.072 14.7 0.1 1 23 629 651 629 651 0.97 8 20 0.00012 0.019 16.5 3.2 3 23 692 713 691 713 0.95 9 20 0.0016 0.27 12.9 0.1 2 23 722 744 721 744 0.94 10 20 0.00024 0.039 15.6 0.7 2 19 784 801 783 806 0.89 11 20 0.00012 0.019 16.5 0.9 1 23 843 865 843 865 0.93 12 20 0.69 1.1e+02 4.7 0.0 2 20 922 940 921 940 0.95 13 20 0.00079 0.13 13.9 0.2 2 23 959 980 958 980 0.97 14 20 0.0068 1.1 11.0 3.3 1 23 1008 1030 1008 1030 0.97 15 20 0.0028 0.45 12.2 2.7 2 21 1051 1070 1050 1074 0.88 16 20 0.023 3.7 9.3 0.2 2 23 1130 1152 1129 1152 0.94 17 20 0.011 1.7 10.4 3.5 3 23 1183 1204 1180 1204 0.88 18 20 0.038 6.2 8.6 0.7 1 23 1211 1235 1211 1235 0.91 19 20 0.089 14 7.5 1.6 1 23 1240 1263 1240 1263 0.96 20 20 0.021 3.4 9.4 0.4 3 23 1295 1316 1293 1316 0.94
Sequence Information
- Coding Sequence
- ATGGACGACGTCGTGGAAATAAGCCTAGAGAATGCCTGCAGGCTTTGCCTCAACACCGACCAAACCAGGTCTTCGATTTTCGGCGTGCCCCATGAATCTGTGCCCTTCGCCGACAAAATTCGCGTCTGCCTCTCTATTCAGGTTTCATCCACTGATAAAGTGTCAACTCAAGTGTGCACATCATGCATCAACAACGTAAACCATTGGCATTCATACAAAGATTCATGTTTGCGTGCGCAGGAGAAGCTCCAACAATGGTTAGCAAAAAAGTCTGGTCCCATCCCTcCTATGGTTACAATCAAAGAAGAACCTATGGATGTAGAACACACAGAAAACAATGGCCAGGCTGCATCAAATAAGTCGAATACTgCTAATCCAGTTGTTTCGAACAGTGAAAATGTTCATTTAGAAAGTAATGCTGAATTATTGACAAAGCATACTGGAAGAAAAGATGGAGAAATTTCTCCTGGAATTCACATTAAACCTGAACCTTTGGATACAGAAGATGAAGACGATTTTAATGTGGATGTTGAGTCAATAAATAGTGGAGAACTCTTGATCAATCCAATGGCAGTAGCAGCAGGAAACACTGTCAATAACGACAGAATCATGGAAGCAGATTCTACTCAGAAATTTGCTGCTCAAAAGttgagaagaaagaagaaatttcgcCGTGGCCCTCATACACACTTCAGAGGTGCTCGCCtctttaagaaaaaatgcCCAGATTGCCAAATTTATTTGCACTCTAAATTTTCGTATACACAGCACATGTCTAGGTATCATGGAATTGCTAGTAAAACAGAAATACCTGCTCAAGCCACTGTGACTAGGCAAAAATCAAAGCTAACTGACCATGTAGATAATGCAGAATCCATTACAGAAACAGAAATGGAACTCAGTGCAGAAGACATGCAGTTTGAAAAGATGATAAAAACCGACCCATTGACACCAGTTCAAAAGAATATAATAGGTCAATTAAAAACATTCTCATGCTTTACATGCAAGCAAACATTCTTTGATCGACGACATACATTGAATCACATCAGGCAGCATATGCCAGATCTTCGACCTTACACTTGTATTGCTTGTCTCACCGAGTTTTCTGATAGGTCAATGTACAAACTTCATTGTGGAGCATCATTTGAATGCGCTATGAAAATTGCCTTAGTAGTTCCTAGAGTAGGCAGTGAAAAGTACTTCACTTGCAACATGTGTCTTAAACCATTCAACAATAGATCAGAACTTCTAAATCACTTAGCCGAACATGCTGAAAAGCAACACAAGCAATTGAATGAGCCTTTGAGGCCACTACCACAACTGAAGCCCATAACTCCAACAGCACAAGTTCCTAAACAAGTCGAGTTTTCACCATTGAGTAAGAAGAGTACAGCTGGTCCTTACATGAATGGAGATCCAGCTCATAATCACATGTGCAACTTGTGTGGCATGATTTACAGATACAAACCCAACATGTTTAAACACCGTGACCTTTGTGCAACTCTGCCAGCAAACATTCGAACTTCTTACAGATGTTACCACTGTAACATGACTTACCTGGTTTACAAAAAGTTCTACACTCACATATTCTCCGAGCACAAAAAGCGTGAAATCACGTGTTACACGTGCCAGATGAAATTCTTAACCGCTGATGAGTACCTCACTCATCACGAAACGCATCGTGATGTACCTATAGAGGATAATCAAGCTGAAACGGAGCAGCAGCCAGAAAGTAGTTATCCCGCAGATGCGGATCCAATGAATTCTTCGACGCATCCTACTGACGTCGGTGAAAAACCATTCAACTGTGCGCTCTGCGGCGAGAACTTTGCCACCAAGGTCGAGCTCAGCGAGCATCGTAATCTTCACCTCAAAGTGAAGATCTACTCTTGCGTAATCTGCCGAAGTATGTTTAGCAGTTCGGGTGCCCTTGAGGTGCACATGAAGGACCATGGCATTCAAGACGCAGGCGAGCAAAACGCCAACAGCTCTTGCGTCGAGTACAACTCGGAGAACTCGCTCAACCAGTCGACTATGTCGGCTGTTTCGGATCCAGGCGGCAAGTTCAACCACTGTTACGAGTGCAACAAGAACTTTTCGAATTACGCCAACTTGAAGAGACACGAGAGGAATTTGCACGGCGGCAAACAAAGGCGTCGCTGGAGTTGCGACGAGTGCAAGAGGCGATTCAAGTCTCTCGATGCTTACAACGAGCATGCGGCAACTGCGCATGGATGCGGACAGCCACGCTCGTCGACTCAATCTCATGCACAGCTGCAACCACAGCCTGAAAAGTTGCTGTCAACGTCACCGCCGAAGATCTCCGCAACGACCGGCAAGCCTTTGATGCAGTGTCCCAAGTGCCCGAAGATGTTTGCCTACCAAGGTAATCTCATTCAACATTGTCAGAACGTGCACAAGGAGAACCATTTCGAACGCATCATAGCTACGTCGCGCGCAGTGCCTTTAGCGAATCCTCCCCGAGCTCGCCCAGTTCAACGTCCTCCTACGCTCACTGCGCGTGGCCACACCTGCGACGTTTGTGGCAAGACATTCCGCGAGGAACAATCTCTCAAGGTTCATCGCGGCTGGCATTTGCGAACCAATTATCGCCTGAAGAAGGATCAAAATTCTAGCTTGGACGAGAATATGCTAAGTGGTCCGGGATACACGGTAACATCAAGTCCACCGAAACCTGCCAAGGCTCGAAAATCGTTCCCCAACAATCCATCGCAGAAGCAACTCAATACCGTTGCAAGTCTGCAGTGTCAAGTTTGCGCCGATCGCTTCTCGGACGTTGCTGAGTTGAGGAAACATCTGTGGGATGTGCACTGTGCGCGTAACAAACCGGAGAAATCATTTGCAAGTGACTTGCAGTGCGAGCTGTGCACCAACAAGTTCCCCGACGAAGAAGCTCTGAAGAATCACATGAAATGGCATCAGCAAAACCCTATTCTCGCCGGCTATCACAACGGCAATGATCTGAACCGCATCGAAACTGTCGATGAGACGAACAAACCTTTTTACTGTGAAACCTGTGGCAAATATTACAGCAACCGTAAGGTCTTCTTACGCCATAAAAAACTTCATAAGGTTTTGCCGGTGGCGTCGATGATGAATCTCCAGTCACTTCAGTCAAGGCGCAACTGTTACTGTAACACTTGCCAAAAGAACTTTGCCACGGAGGCGTCACTCAGGAGGCACAAAGCTTCTCAAAGTCATTTGAACGTTGTACGTTCGCAGATACCTGCGAAGAAGATCACGACCACAGCGTTGATACACCATCCACCACCGGAACCGATGGATTACCAAGAGGTGAAGAATGAACCGAATACCGAGTATTCAGAACCCAGTCCGTCAAACTTAATGTCAAGAAAGAAATCGGTCACATGCTCGGACTGCAAGCAGATTTTTCCAAACATGAGCGTGCTTTACCAACACAGACAGCTTGTGCACAAAGTGCCAGTGGCCACTAAGGTGATGAAGTCTGGTGGTGGAAAACCCACTGAGTGCGTGCCCTTGATGAGTACGGAAGGTTTTGTCTGTTGCAATGTCTGTGGCAAACAATTCCCAGGAATTTCAAATCTCAAGCAGCATTTCTCGCACAAGCACAAACCCAGGCCGCCGACTTTCCCTTGTGTCTCGCCAGGATGTAAGCTCATTTTTCACAGTCTGAGCTCGTTGAAGAATCACGAGACTACACACACGAACATGATTTACAACTGTAATTTGTGCGACAAACACATGTTCTCCAAGACCGCGATAAACAAGCATATGATAATCATGCACAAAGCGATTTATCAATCCGGAGCGAGTAAAAGTGCTCTTTGGTCTGAGATTGATTTGACGAATTATGCTATCAAGAATTGCCAAGGTACAGCTTGTCCCAAGTGCAACGTCAAGTATCCGAATTTGAGGGCATTGAAGATTCACTATTTCAAGTTCCACGAGAAAACGTAA
- Protein Sequence
- MDDVVEISLENACRLCLNTDQTRSSIFGVPHESVPFADKIRVCLSIQVSSTDKVSTQVCTSCINNVNHWHSYKDSCLRAQEKLQQWLAKKSGPIPPMVTIKEEPMDVEHTENNGQAASNKSNTANPVVSNSENVHLESNAELLTKHTGRKDGEISPGIHIKPEPLDTEDEDDFNVDVESINSGELLINPMAVAAGNTVNNDRIMEADSTQKFAAQKLRRKKKFRRGPHTHFRGARLFKKKCPDCQIYLHSKFSYTQHMSRYHGIASKTEIPAQATVTRQKSKLTDHVDNAESITETEMELSAEDMQFEKMIKTDPLTPVQKNIIGQLKTFSCFTCKQTFFDRRHTLNHIRQHMPDLRPYTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPRVGSEKYFTCNMCLKPFNNRSELLNHLAEHAEKQHKQLNEPLRPLPQLKPITPTAQVPKQVEFSPLSKKSTAGPYMNGDPAHNHMCNLCGMIYRYKPNMFKHRDLCATLPANIRTSYRCYHCNMTYLVYKKFYTHIFSEHKKREITCYTCQMKFLTADEYLTHHETHRDVPIEDNQAETEQQPESSYPADADPMNSSTHPTDVGEKPFNCALCGENFATKVELSEHRNLHLKVKIYSCVICRSMFSSSGALEVHMKDHGIQDAGEQNANSSCVEYNSENSLNQSTMSAVSDPGGKFNHCYECNKNFSNYANLKRHERNLHGGKQRRRWSCDECKRRFKSLDAYNEHAATAHGCGQPRSSTQSHAQLQPQPEKLLSTSPPKISATTGKPLMQCPKCPKMFAYQGNLIQHCQNVHKENHFERIIATSRAVPLANPPRARPVQRPPTLTARGHTCDVCGKTFREEQSLKVHRGWHLRTNYRLKKDQNSSLDENMLSGPGYTVTSSPPKPAKARKSFPNNPSQKQLNTVASLQCQVCADRFSDVAELRKHLWDVHCARNKPEKSFASDLQCELCTNKFPDEEALKNHMKWHQQNPILAGYHNGNDLNRIETVDETNKPFYCETCGKYYSNRKVFLRHKKLHKVLPVASMMNLQSLQSRRNCYCNTCQKNFATEASLRRHKASQSHLNVVRSQIPAKKITTTALIHHPPPEPMDYQEVKNEPNTEYSEPSPSNLMSRKKSVTCSDCKQIFPNMSVLYQHRQLVHKVPVATKVMKSGGGKPTECVPLMSTEGFVCCNVCGKQFPGISNLKQHFSHKHKPRPPTFPCVSPGCKLIFHSLSSLKNHETTHTNMIYNCNLCDKHMFSKTAINKHMIIMHKAIYQSGASKSALWSEIDLTNYAIKNCQGTACPKCNVKYPNLRALKIHYFKFHEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00326581;
- 90% Identity
- -
- 80% Identity
- -