Ccun000029.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- hang
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000001.1:398506-406435[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.22 18 6.0 3.2 2 23 240 262 239 262 0.96 2 20 0.14 11 6.6 6.2 1 23 331 353 331 353 0.98 3 20 6.8e-05 0.0055 17.0 0.4 1 23 402 424 402 424 0.96 4 20 0.017 1.3 9.5 0.5 1 20 478 497 478 499 0.94 5 20 1.7 1.4e+02 3.2 2.7 2 23 540 561 539 561 0.96 6 20 0.00036 0.029 14.7 0.1 1 23 602 624 602 624 0.97 7 20 0.00039 0.031 14.6 0.1 1 23 630 652 630 652 0.97 8 20 0.0001 0.0082 16.5 3.2 3 23 693 714 692 714 0.95 9 20 0.0016 0.13 12.7 0.1 2 23 723 745 722 745 0.93 10 20 0.00021 0.017 15.5 0.7 2 19 785 802 784 807 0.89 11 20 5e-05 0.004 17.4 0.8 1 23 844 866 844 866 0.93 12 20 0.6 48 4.6 0.0 2 20 926 944 925 944 0.95 13 20 0.044 3.5 8.2 0.3 2 23 963 984 962 984 0.96 14 20 0.006 0.48 10.9 3.3 1 23 1012 1034 1012 1034 0.97 15 20 0.0024 0.19 12.1 2.7 2 21 1055 1074 1054 1078 0.88 16 20 0.0032 0.26 11.7 0.3 2 23 1134 1156 1133 1156 0.96 17 20 0.0093 0.74 10.3 3.3 3 23 1187 1208 1185 1208 0.90 18 20 0.016 1.2 9.6 0.6 1 23 1215 1239 1215 1239 0.91 19 20 0.011 0.9 10.0 1.8 1 23 1244 1267 1244 1267 0.96 20 20 0.015 1.2 9.6 0.7 2 23 1298 1320 1297 1320 0.94
Sequence Information
- Coding Sequence
- ATGGACGACGTCGTAGAGATAAGCTTGGAAAATGCCTGCAGGCTTTGCCTCAATACCGAGCAAAGCAGGTCTTCGATTTTCGGCGTGCCCTATGAATCTGTGCCCTTCGTCGACAAAATTCGCGCCTGCCTTTATATTCAGgtTTCCCCCAATGATAAAATGTCAACCCAAGTATGTACATCGTGCGTCAAGGATGTAAATCACTGGCATTCGTATAAAACTTCATGTTTACGAGCACAAGAAAAGCTTCAACAATGGTTAGCTAAAAAGTTGGCTCCCAATCCTccTATGGTAACTATCAAAGAAGAACCTATGGATATAGAATTCatagataataatattcatactGCATCGAATGAGTCAATTGCTgttaatcaaattatatcaAATGTTGAATGTGTTCAATCAGAAAATAATGTCGAATCTATAACAAAGCCTACAGAAATGAAAGATGGGGAAATTTCTCCTGGGGttcatattaaaattgaaccaGTAGATACAGAAGACGAAGATGATTTTAACGTAGATGTAGAGTCTATAAACAGTGGAGAACTATTGATCAATCCAATGGCAGTAGCAGTGGGTAATACTGCTAATAGCGACAGAATTATGGAAGCAGATTCTACTCAAAAATTTGCTGCTCAAAAATTGCGTAGGAAGAAGAAATTCCGTCGTGGTCCTCACACACATTTCAGAGGCACTCGCCTCTTTAAAAAGAAGTGCCCAGATTGTCAAATCTATCTGCACTCTAAATTTTCTTATACACAGCATATGTCTAGGTATCATGGAATATCTAgcaaaacaacagaaaaaccTGCTCAAATTACTGTAAATAGGCAAAAATCAAAGCTTACTGAACACATGGATGACGTAGAATCCATTCCAGAAACAGAAATGGAACTCAGTCCAGAAGAAatacagtttgaaaaaatgataaaaactgATCCATTAACACCagttcaaaaaaatataataggtCAATTAAAAACATTCTCGTGTTTCACAtgcaaacaaacattttttgatCGAAGACATACGCTAAATCACATCAGGCAGCATATGCCAGATCTTAGACCGTATACTTGTATTGCTTGCCTCACAGAGTTTTCTGACAGGTCAATGTACAAACTTCATTGTGGAGCATCATTTGAATGCGCTATGAAAATTGCCTTAGTAGTTCCTAGAGTAGGCAGTGAAAAATACTTCACTTGCAACATGTGTCTTAAACCATTTAACAACCGATCAGAGCTTTTAAATCATTTAGCTGAACATGCCGAAAAGCaacataaacaattaaacgagCCTCTGAAGTCACCGTCAAAACTGAAGCCTATCACTCCAGCAGCACCAGTTCCACGACATGTCGAATTTTCACCATCCAGCAAGAAAAGTACAGCTGGTCCATACATGAATGGGGATCCAGCTCATAATCATATGTGCAATTTGTGTGGTATGATATATAGATACAAACCAAACATGTTCAAACATCGCGATCTTTGTTCCACTCTGCCAGCAAACATTAGGACTTCATACAGATGCTTCCACTGTAACATGACTTATCTGGTGTATAAAAAGTTCTACACCCATGTATTTTCCGAACATAAAAAGCGTGAAATTACTTGTTACATGTGTCACATGAAATTTCTCACTGCTGACGAGTACCTTACTCATCACGAGATGCATCGCGATGTACCAATAGCGGATAGTCAAACTGAAACAGAACAGCAACCAGAAAGTAGTTATTCCGCAAACGTAGATCCTATGAACTCTTCGACGCATCCTACCGACATAGGCGAAAAACCCTTTAACTGTGCACTCTGCGGCGAGAATTTCGCTACAAAGGCAGAGCTCAGTGAGCACCGTAATCTTCatttgaaagtgaaaatttaCTCTTGCGTAATCTGTCGAAGTATGTTTAGCAGCTCGGGTGCCCTCGAGGTGCACATGAAGGACCATGGCATTCAGGACGCAGGCGAGCAAAATGCCAACAGCTCTTTCGTCGAATACAACTCGGAGAACTCCCTCAACCAGTCGACTCTCTCGGCTGTTTCAGATCCGGGTGGCAAGTTCAACCACTGTTACGAATGCAACAAGAACTTTTCGAATTACGCCAACCTGAAGAGACACGAAAGGAATTTGCACGGTGGTAAACAAAGACGTCGTTGGAGTTGCGATGAGTGCAAGCGGCGATTCAAGTCTCTTGATGCTTACACCGAGCACGTGGCAATCGCGCATAAGCGCACTCAGCCACAATCGTCACCTCAGTCGCATGTTCCGCCTCAGCCTCAGCCTGAAAAGTTGCTGATGTCCCCGGCACCGAAGATCTCCGCAACGACGGGCAAGCCTTTGATGCAGTGCCCCAAGTGTCCAAAAATGTTCGCTTATCAAGGCAATCTCATCCAACATTGTCAGAACGTGCATAAGGAAAATCATTTCGAACGCATCGTGGCTACGTCGCGCGCAGCGCCGTTAGCAAACGTTCCTCCACTTCGTTCAGTTCCACGGGCTCACACGCTCACTCCGCGTAACCACACCTGTGACATTTGCGGCAAGTCATTCCGCGAGGAACAATCCCTAAAGGTTCATCGCGGCTGGCACTTGCGAACGaattatcgtttgaaaaatgatcaaaatacCAGCTTAGACGAGAACGTTCTAAGTGGCCCGGGATACACGATAACACCAATGTCAGCAGGTCCGCCAAAACCTGCCAAGGCTAGAAAGTCGTTTCCGAACAATCCGTCGCAAAAGCAGCTCAATGCCATTGCAAGCTTGCAGTGTCAAGTTTGCGCCGATCGCTTCTCGGACGTTGCTGAATTGAGGAAACACTTGTGGGACGTACACTGTGCGCGTAACAAACCTGAAAAGTCATTTACGAGCGACTTGCAGTGCGAGCTGTGCACCAACAAATTTCTCGACGAAGAGGCTCTGAAGAACCACATGAAATGGCATCAACAGAACCCTATTCTTGCTGGCTACCACAACGGTAATGATTTGAATCGTATCGAAACTGTCGATGAGACAAACAAGCCTTTCTACTGCGAAACCTGCGGCAAATATTACAGCAACCGTAAAGTCTTCTTGCGTCACAAAAAGCTTCACAAGGTTTTGCCTGTAGCGTCGATGATGAATCTTCAGTCGCTTCAATCAAGGCGCAACTGTTACTGTAACACCTGCCAAAAGAACTTTGCCACGGAGGCTTCGCTTAGAAGGCATAAAGCTTCACAAAGCCACTTAAACGTTGTGCGCTCGCAGATACCCGCGAAGAAGATCACGACCACGGCGCTGATACACCATCCACCGCCGGATCCCCTAAAGTACCAAGAGGTGAAAGATGAACCGAGCGCCGAGTATGCGGCTTCCAGTTCATCAAATCTGATGTCAAGAAAGAAGTCGGTGACGTGCTCGGACTGCAAGCAGGTTTTCCCAAACATGAGTGTGCTTTATCAGCACAGGCAGCGGGTGCACAAAGTGCCTACCGCCGCTAAGGTAACGAAGACCATCGGGGCCAAGCCCACTGAGTGCGTGCCTCTAATGGGCTCAGAGGGTCTAGTATGTTGCAATGTCTGTGGCAAGCAATTCCCAGGAATCTCCAATCTCAAGCAGCATTTCTCACACAAGCACAAACCCAGGCCACCGACTTTCCCTTGTGTCTCGCCAGGATGTAAGGTCGTCTTTCACAGTCTGagctcgttaaaaaatcaCGAGACTACGCATACGAACATGATTTACAACTGTAATTTTTGCGACAAACACGTGTTCTCCAAGACAGCAATAAACAAGCATATGATAGTTATGCACAAGGCAATTTATCAGTCCGGAGCGAGTAAAAGTGCTCTTTGGTCGGAGATTGACCTTACTAATTACAATATCAAGAACTGCCAAGGTACGTCTTGTCCCAAATGTAACGTCAAGTATCCAAATTTGAGGGCATTGAAGATTCATTATTTCAAGTTTCACGAGAAAACCAATGAAACTCAGGAACGAGACGAAAATGGTACGAGGAATGGTGAAACTTTGCGAAGTAGAAGGTACTTGTCAGCCAAAGATAATTGGTTCGATGATGATACATTGAATTCTATTTGGCTTACGTATCCCGGTATACTCTATAATATTAAACACAACAACAAGGGCCAGGAAATGTCAGTTCCTTCACCGTGTCTCATTATGCGAATCATGTACAAGTGA
- Protein Sequence
- MDDVVEISLENACRLCLNTEQSRSSIFGVPYESVPFVDKIRACLYIQVSPNDKMSTQVCTSCVKDVNHWHSYKTSCLRAQEKLQQWLAKKLAPNPPMVTIKEEPMDIEFIDNNIHTASNESIAVNQIISNVECVQSENNVESITKPTEMKDGEISPGVHIKIEPVDTEDEDDFNVDVESINSGELLINPMAVAVGNTANSDRIMEADSTQKFAAQKLRRKKKFRRGPHTHFRGTRLFKKKCPDCQIYLHSKFSYTQHMSRYHGISSKTTEKPAQITVNRQKSKLTEHMDDVESIPETEMELSPEEIQFEKMIKTDPLTPVQKNIIGQLKTFSCFTCKQTFFDRRHTLNHIRQHMPDLRPYTCIACLTEFSDRSMYKLHCGASFECAMKIALVVPRVGSEKYFTCNMCLKPFNNRSELLNHLAEHAEKQHKQLNEPLKSPSKLKPITPAAPVPRHVEFSPSSKKSTAGPYMNGDPAHNHMCNLCGMIYRYKPNMFKHRDLCSTLPANIRTSYRCFHCNMTYLVYKKFYTHVFSEHKKREITCYMCHMKFLTADEYLTHHEMHRDVPIADSQTETEQQPESSYSANVDPMNSSTHPTDIGEKPFNCALCGENFATKAELSEHRNLHLKVKIYSCVICRSMFSSSGALEVHMKDHGIQDAGEQNANSSFVEYNSENSLNQSTLSAVSDPGGKFNHCYECNKNFSNYANLKRHERNLHGGKQRRRWSCDECKRRFKSLDAYTEHVAIAHKRTQPQSSPQSHVPPQPQPEKLLMSPAPKISATTGKPLMQCPKCPKMFAYQGNLIQHCQNVHKENHFERIVATSRAAPLANVPPLRSVPRAHTLTPRNHTCDICGKSFREEQSLKVHRGWHLRTNYRLKNDQNTSLDENVLSGPGYTITPMSAGPPKPAKARKSFPNNPSQKQLNAIASLQCQVCADRFSDVAELRKHLWDVHCARNKPEKSFTSDLQCELCTNKFLDEEALKNHMKWHQQNPILAGYHNGNDLNRIETVDETNKPFYCETCGKYYSNRKVFLRHKKLHKVLPVASMMNLQSLQSRRNCYCNTCQKNFATEASLRRHKASQSHLNVVRSQIPAKKITTTALIHHPPPDPLKYQEVKDEPSAEYAASSSSNLMSRKKSVTCSDCKQVFPNMSVLYQHRQRVHKVPTAAKVTKTIGAKPTECVPLMGSEGLVCCNVCGKQFPGISNLKQHFSHKHKPRPPTFPCVSPGCKVVFHSLSSLKNHETTHTNMIYNCNFCDKHVFSKTAINKHMIVMHKAIYQSGASKSALWSEIDLTNYNIKNCQGTSCPKCNVKYPNLRALKIHYFKFHEKTNETQERDENGTRNGETLRSRRYLSAKDNWFDDDTLNSIWLTYPGILYNIKHNNKGQEMSVPSPCLIMRIMYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734929;
- 90% Identity
- -
- 80% Identity
- -