Gnig000764.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- PRDM15
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000001.1:6160380-6162706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.23 13.1 2.4 1 23 284 306 284 306 0.98 2 12 5e-05 0.0081 17.7 0.9 1 23 310 332 310 332 0.97 3 12 9e-07 0.00015 23.2 1.5 1 23 337 359 337 359 0.97 4 12 1.7e-05 0.0027 19.2 2.9 1 23 400 422 400 422 0.98 5 12 0.0008 0.13 13.9 1.3 1 23 427 449 427 449 0.97 6 12 0.00022 0.036 15.7 1.5 1 23 505 527 505 527 0.97 7 12 0.00065 0.11 14.2 1.1 2 23 535 556 535 556 0.97 8 12 1.1e-06 0.00018 22.9 2.1 1 23 567 589 567 589 0.96 9 12 6.8e-05 0.011 17.3 1.0 1 23 595 617 595 617 0.98 10 12 0.00017 0.028 16.0 0.7 1 23 623 645 623 645 0.98 11 12 5.2e-06 0.00084 20.8 2.0 1 23 651 673 651 673 0.96 12 12 9.3e-05 0.015 16.9 0.3 1 22 679 700 679 700 0.96
Sequence Information
- Coding Sequence
- ATGGCTATAAGCAACAGCTACTTTGCCATGCCCATGAACATGGATAGGGCTTGCAGGATATGTTTGTCGGAGAACACCAATCTATCACCAATATTCTGTAACAATCAGGATGCTGGTAACCTTGTGGATCTGCCACAAAAGATTCAAGTTTGTGGAGATGTAGAGTGCCACGAGCAGGATGGTTTGCCTTCATTGATCTGCGATGTTTGTATATACAAGGCTAACTTTGCTCACGAGTTCAGACAATTGTGCCAGCTCTCCGACGCTAGATTGAGactttattacaataaacCTTCTAAGTATAGTACTAACGATCCTGTTACGGaggataataaaaaagatgaagTATTACAGAGCGATTATTTTTCCAAGCAAGAGGTAATCAGTAGCCAGCAGTATCATGATCCAATGTCAACTGAAACCTATGCAACCGAACCCCAAGCCAATTCAGTTGTAACGACAATTGAATCAGCTATGCCTTCCGTTAATGTTAACATATCCGTtgatcatgaaaaattgtttcatctGAGCTTCGAGGAGCAAACCAAGGATGTTGACAAGAATGTAATAAATGTACCCTGTGATACCCAATCAGTGACGTGTACTCAAGAAATGATTCCTGTTACTACAAATTTAATCGACGGCGTTTGCACCATCGAAACCACTATGAATACTACTGACAATGAAGTGAAAGACGAAGTTACGTACTTCAATTACATTACAAAGGATAATGAAAGCATTGAACAAAACAACGATTTAGAGAAACAAATCTTACCTGACGTTAACCAGGTAGAAAGCAATTACGCAGAGCCACCGACTAGCAGTAATCAAGTTATGGATGACGTGAAATACAGATGCGATAAGTGCATGAAGTTTTACACGACCGAGAAAGGATTGAAAAAGCATTTGGAAAGCCACGACAATGAGCACAAATGCGAGATCTGCTCGAAGGAATTCGTCAAGCTGGACGCCTTGGAGAAGCACAGGAACGCTCACTCGATGAAAGCGCACCCCTGCAAGGAATGCAACGCGAGTTTCAGCAAATCCTCGAGTCTCGCGAAGCACATGAAGGTGCACGCGAAGCCCAGTGAGCTCGCGAAGAACGAGATTTTCCTGCCGGAGACGACGTTGAAGAGCGACACGGACTCGGAGTACGATCAACGCGAGGAGGACGGTTTCGAGAACGCCCCGGAGATCTTCAAGTGCGACGAGTGCGGCCAGCAGTGCTCAACTCTGAAAAATCTCAAACGCCACACTCTGATCCACGGCGAGAGAAAATACTCATGCACCGTTTGCAAAAAGTGGTTCTTCCGTCCGGACACGTTGAAAAAGCACGCCGAGCGTCACGGCCACGGCCTCCTCGACAATCTCAGCGACAGCAACAAGCTGTACGAATCGGACGACGACTCGTTCCCCAGCGCCGACAAagacgcgacgacgacgacgacaacgacaacgaAGAAGGAGGAAAGCGACGAGGAaagctcagcagcagcaacagccacGGGCGAGTACAAGTGTCAGCACTGCGACAAGGTGATGGCCTCGAAGAAGGGTCTTCGCCGGCACGTGGTGATGCACAAACCCAAGCCCGAGCCGGCGGTTTGCGAGATCTGCAAGAAGGTGTGCGCCAGTCGAGCTCGTCTCGCTCTCCATCAGAAGACCCACGCGAAGCCTAAGGAGAAGGTGCCGCGAGAGTATCTCTGCCACATATGCAGCAAAGTTTACCCGAGCAACTCGTCCCTCACCTACCACATGCGTACTCATACGGGCATCAAGCCTCACGTCTGCAAAATCTGCAACAGCGGcttcaccaccaccaccagtcTCGCCAATCACATTCGCATTCACACCGGCGACAAGCCGTTCGTCTGCCACGTCTGCAGCGCGGCTTTCGCCGTGAGCTCGGCCTTCAGGCGACACCTCACCCGACACACCGGCGAAGCCAATTACCTCTGCAAAACTTGCGGTAAAGCTTTCAAACGACTGAGCACCCTGAAGGAGCACACTTACACGCATTCGGGCGAGAAGCCGTACGTTTGCAAGACTTGCGGCGCGGCTTACAGCCACAGCGGCAGTCTGTTCGCTCATCAGAAGCGCTGTCGCGCTCAATTCAACGACATGGTCGTCGAcgagcatcatcatcatcatcataatcACTCGCCCGTGACCGCTGCTGGACATCATCATATCCACGTTAACAGCGTGCAGTCGGCTGTGCGCTCGCTCACTGTGATAGGCCAGATGTACTga
- Protein Sequence
- MAISNSYFAMPMNMDRACRICLSENTNLSPIFCNNQDAGNLVDLPQKIQVCGDVECHEQDGLPSLICDVCIYKANFAHEFRQLCQLSDARLRLYYNKPSKYSTNDPVTEDNKKDEVLQSDYFSKQEVISSQQYHDPMSTETYATEPQANSVVTTIESAMPSVNVNISVDHEKLFHLSFEEQTKDVDKNVINVPCDTQSVTCTQEMIPVTTNLIDGVCTIETTMNTTDNEVKDEVTYFNYITKDNESIEQNNDLEKQILPDVNQVESNYAEPPTSSNQVMDDVKYRCDKCMKFYTTEKGLKKHLESHDNEHKCEICSKEFVKLDALEKHRNAHSMKAHPCKECNASFSKSSSLAKHMKVHAKPSELAKNEIFLPETTLKSDTDSEYDQREEDGFENAPEIFKCDECGQQCSTLKNLKRHTLIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLSDSNKLYESDDDSFPSADKDATTTTTTTTKKEESDEESSAAATATGEYKCQHCDKVMASKKGLRRHVVMHKPKPEPAVCEICKKVCASRARLALHQKTHAKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQFNDMVVDEHHHHHHNHSPVTAAGHHHIHVNSVQSAVRSLTVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00326560;
- 90% Identity
- -
- 80% Identity
- -