Ccun008628.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- Prdm15
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000003.1:29622267-29624540[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.091 13.2 2.3 1 23 282 304 282 304 0.98 2 12 5.4e-06 0.00043 20.5 2.9 1 23 308 330 308 330 0.98 3 12 7.2e-07 5.7e-05 23.2 1.5 1 23 335 357 335 357 0.97 4 12 1.3e-05 0.0011 19.2 2.9 1 23 399 421 399 421 0.98 5 12 0.00064 0.051 13.9 1.3 1 23 426 448 426 448 0.97 6 12 0.00033 0.026 14.9 1.9 1 23 493 515 493 515 0.97 7 12 0.00052 0.042 14.2 1.1 2 23 523 544 523 544 0.97 8 12 8.6e-07 6.9e-05 23.0 2.1 1 23 555 577 555 577 0.96 9 12 5.4e-05 0.0043 17.3 1.0 1 23 583 605 583 605 0.98 10 12 0.00014 0.011 16.0 0.7 1 23 611 633 611 633 0.98 11 12 4.1e-06 0.00033 20.8 2.0 1 23 639 661 639 661 0.96 12 12 7.4e-05 0.0059 16.9 0.3 1 22 667 688 667 688 0.96
Sequence Information
- Coding Sequence
- ATGGCTATAAACAACAGCTACTTTGTCATGCCCATGAATATGGATAGGGTTTGTAGGATATGTTTATCGGAGAACACCAATTTATTACCTATATTCTGTAACAATCAAGATACTGGTAATCTTGTGGATCTATCGCATAAGATTCAAATCTGTGGAGATGTTGAGTGCCACGAGCAAGATGGTTTACCTTCATTGATTTGCgatgtttgtatatataaggCTAACTTTGCTCATGAGTTCAGACAATTGTGTCAGCTCTCCGATGCTAGATTGAGactttattacaataaacCTTCCAAATATAGTACTGCCGATCCTGGAGCACAGGACGATAAAAAAGATGAAGTATTACAAAGTGATTATTTTTCCAAGCAAGAGGTAATTAATAGCCAACAGTATCATGATCCCATGTCAACTGAAAATTACACAACAGAATCCCAAGCCAATTCAGTTGTAACGTCAATTGAATCAGCAATGCCTTCCGTTAATGTCAACATATCCGTGGaggatgaaaaattatttcatttgagcTTTGAGGAGCAAACCAAGGATGttgacaaaaatgtaattgtacCCTGTGATACTCAATCAGTAGCGTGTGCTCAAGAAATGATTCCTGTATCcacaaatttaattgatactGTTTGTACCATTGACACGACTATGTCTACAGCTGACAATGAAGTGAAAGATGAAGTTACATATTTTAACTACATAACGAAGGACAATCAGAGCATTGAACAAACTAGCGATATTGAGAAACAAACGTTATCTGGAGTAAATCAAGTAGAAAGCCATTATCCAGAGCCAACAAGCAGCAATCAAACTGTAGATAACGTGAAATATAGATGCGACAAATGCATGAAGTTCTATACAACCGAGAAAGGATTGAGAAAGCATTTAGAAAGCCACGAGAATCAACATAAATGTGAAATCTGTTCGAAGGAGTTTTCCAAGTTGGATAGCCTTGAAAAACATAGGAACACTCATTCGACGAAACCGCATCCTTGCAAGGAGTGTAACGCGAGTTTCAGTAAATCATCGAGCCTCGCAAAACACATGAAAGTTCACGCAAAGCCTAACGagcttgtaaaaaatgaagtttttttaCCAGAGACAGTAGCAATGAAGAATGATTCGGACTCGGAGGATGATCAACGAGAGGAGGATGGTTTTGAGAATGCCCCGGAGATTTTTAAATGCGACGAGTGTGGTCAACAATGTTCAACTCTAAAAAATCTCAAACGCCATACTTTGATCCATGGCGAGAGAAAATACTCGTGTACcgtttgtaaaaaatggtttttcCGTCCGGACACGTTGAAAAAACACGCAGAGCGTCACGGTCATGGTCTTCTCGACAATCTCAACGACAGTAATAAGCTGTATGAATCGGATGATGATTCGTTTCCCAGCACTGATAAAGATGCAGTCAAGAAAGAGGAAAGCGACGAGGACGCTGGGACTACAGGTGTGTACAAATGTCAACACTGCAACAAGGTGATGGCCTCGAAAAAGGGTCTTCGCCGACACGTAGTCATGCATAAACCTAAGCCTGAACCTGCAGTTTGCGAGATTTGTAAGAAAGTATGCGCAAGTCGCGCTCGTCTTGCTCTTCATCAGAAAACCCATGCAAAGCCGAAGGAGAAGGTACCACGAGAATATCTGTGTCATATATGTAGCAAAGTCTATCCAAGCAACTCGTCTCTGACCTACCATATGCGTACTCATACAGGCGTCAAGCCTCatgtttgtaaaatatgtaaCAGCGGTTTCACAACGACAACAAGTTTAGCGAATCACATTCGCATTCATACCGGTGACAAGCCATTCGTCTGCCATGTTTGTAGTGCAGCGTTTGCCGTAAGCTCCGCTTTTAGAAGACACTTGACAAGACACACCGGCGAAGCCAATTATCTTTGCAAAACTTGCGGCAAAGCTTTTAAACGATTGAGCACTCTCAAAGAACATACGTATACTCATTCGGGTGAGAAACCTTACGTTTGCAAAACTTGCGGTGCTGCTTACAGCCATAGTGGTAGTTTGTTTGCACATCAAAAACGTTGCCGAGCTCAATTCAATGAAATGGTCGTTGAtgagcatcatcatcattcaCCTGTGACTAATTCTGGCCATCATCATATACATGTCAACAGTGTACAGTCGGCCGTGCGTTCACTCACTGTGATAGGCCAAATGTACTGA
- Protein Sequence
- MAINNSYFVMPMNMDRVCRICLSENTNLLPIFCNNQDTGNLVDLSHKIQICGDVECHEQDGLPSLICDVCIYKANFAHEFRQLCQLSDARLRLYYNKPSKYSTADPGAQDDKKDEVLQSDYFSKQEVINSQQYHDPMSTENYTTESQANSVVTSIESAMPSVNVNISVEDEKLFHLSFEEQTKDVDKNVIVPCDTQSVACAQEMIPVSTNLIDTVCTIDTTMSTADNEVKDEVTYFNYITKDNQSIEQTSDIEKQTLSGVNQVESHYPEPTSSNQTVDNVKYRCDKCMKFYTTEKGLRKHLESHENQHKCEICSKEFSKLDSLEKHRNTHSTKPHPCKECNASFSKSSSLAKHMKVHAKPNELVKNEVFLPETVAMKNDSDSEDDQREEDGFENAPEIFKCDECGQQCSTLKNLKRHTLIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLNDSNKLYESDDDSFPSTDKDAVKKEESDEDAGTTGVYKCQHCNKVMASKKGLRRHVVMHKPKPEPAVCEICKKVCASRARLALHQKTHAKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQFNEMVVDEHHHHSPVTNSGHHHIHVNSVQSAVRSLTVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734915;
- 90% Identity
- -
- 80% Identity
- -