Basic Information

Insect: Galeopsomyia nigrocyanea
Gene Symbol: -
Assembly: GCA_035047105.1
Location: JAWWMK010000020.1:1909699-1916090[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 9.6e-05 0.016 16.8 1.4 1 23 429 451 429 451 0.96

2 17 1.9e-05 0.0031 19.0 1.9 1 20 457 476 457 479 0.94

3 17 3.2e-05 0.0051 18.3 0.7 1 23 485 507 485 507 0.98

4 17 7.8e-05 0.013 17.1 4.4 1 21 513 533 513 535 0.95

5 17 2.4e-05 0.0039 18.7 4.6 1 23 541 563 541 563 0.99

6 17 2.4e-05 0.0039 18.7 5.3 1 23 569 591 569 591 0.97

7 17 9.1e-06 0.0015 20.0 7.1 1 23 597 619 597 619 0.97

8 17 8.9e-08 1.4e-05 26.4 2.7 1 23 625 647 625 647 0.98

9 17 6.6e-05 0.011 17.3 6.7 1 23 653 675 653 675 0.97

10 17 5.4e-07 8.8e-05 23.9 2.9 1 23 681 703 681 703 0.98

11 17 8.1e-06 0.0013 20.2 7.8 1 23 709 731 709 731 0.98

12 17 2.5e-05 0.0041 18.6 9.1 1 23 737 759 737 759 0.98

13 17 3.3e-05 0.0054 18.3 7.5 1 23 765 787 765 787 0.98

14 17 0.00094 0.15 13.7 8.8 1 21 793 813 793 815 0.94

15 17 1.2e-05 0.002 19.6 0.4 1 23 821 843 821 843 0.98

16 17 0.029 4.7 9.0 4.5 1 23 853 875 853 875 0.98

17 17 3.2e-07 5.2e-05 24.6 1.6 1 23 881 903 881 903 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	9.6e-05	0.016	16.8	1.4	1	23	429	451	429	451	0.96
2	17	1.9e-05	0.0031	19.0	1.9	1	20	457	476	457	479	0.94
3	17	3.2e-05	0.0051	18.3	0.7	1	23	485	507	485	507	0.98
4	17	7.8e-05	0.013	17.1	4.4	1	21	513	533	513	535	0.95
5	17	2.4e-05	0.0039	18.7	4.6	1	23	541	563	541	563	0.99
6	17	2.4e-05	0.0039	18.7	5.3	1	23	569	591	569	591	0.97
7	17	9.1e-06	0.0015	20.0	7.1	1	23	597	619	597	619	0.97
8	17	8.9e-08	1.4e-05	26.4	2.7	1	23	625	647	625	647	0.98
9	17	6.6e-05	0.011	17.3	6.7	1	23	653	675	653	675	0.97
10	17	5.4e-07	8.8e-05	23.9	2.9	1	23	681	703	681	703	0.98
11	17	8.1e-06	0.0013	20.2	7.8	1	23	709	731	709	731	0.98
12	17	2.5e-05	0.0041	18.6	9.1	1	23	737	759	737	759	0.98
13	17	3.3e-05	0.0054	18.3	7.5	1	23	765	787	765	787	0.98
14	17	0.00094	0.15	13.7	8.8	1	21	793	813	793	815	0.94
15	17	1.2e-05	0.002	19.6	0.4	1	23	821	843	821	843	0.98
16	17	0.029	4.7	9.0	4.5	1	23	853	875	853	875	0.98
17	17	3.2e-07	5.2e-05	24.6	1.6	1	23	881	903	881	903	0.98

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCTCTGCCAGCGACAACGCAGGCACAACAAGagGAAGTAAGTGGTCAAGGTACTACCCGTACCACGTACCAAGGTGATGTGCCAACAGCAACAACTGTCAACAATGTAGCAAACAATCCAAGCACGTCCACAGACCTCCGTGTAGGTACTGTAGCGTTAGCATCATCGGTAGCTTCCTCCGTAGCCAAATATTTGGTCCTTACCAATTTATTCCCTGGGCCGATACCTCAGGTGTCGGTTTACCCTCCTAACAACAAAAATGCTGGGGGCGGTAAAGTTCAAACTACCAAAGAAACGGCTGTTTTATTGAACCAGGACGTAGCACTAACTTTCACTGGACCTAACCAAACTTCTACCTCACAACAGCAAACATCTGTTGGTAGAAGTAATCAACAAAGCACTCTGCAATCTGTTCAGGTCCCAGTCTCTCTTCCAGGGCTGAGCCTTGATGGAGCTCACTTACAAACGCATCTGCAAGCAGTGCACGCCCAAGTACAGCAGCAGCTACAgaatcaacagcagcagcagcaacagcatcaCCAACAACAAGCACAGTTGTTGCAACAAGTCCAGGCTCTTCAGCAAAttcaaaatcatcaaaatgcTCAAAACGCAGCACAGCAGGCCAACCAAAACCAGAATTCATCCAGAGACAACAAACCCAAGGATGAACAACCCGATAATCAAGGACACTCCCATGTAAATAACGACCATCATCAGCAAGCTCAGGAATTGCAGCAAAATTTGATAcatcagcaacaacagcagcagcaacaaattAGTGTTACCATTGGTGGCAGTGCTACAGATAATGCCAATCCcagtgaaaaaattgagaagaAAGAGGAGATACGCCAGTTGAATATGGCTCAATTTCAAGTGCCTGACTTAAAGCCAGGAAGTCATATGATGGACATTCGGACTGCGGATGGTTCAATCGTAAAAATCAGTGCTGCAAGTGATCCCGATCTCGCGAAAACCTTGGGCGTTGATATATCTCAATACATAAACAAgGGAACAGTGAACGTAGAGGATTTGAACCAAATAAACCAATTGCTGGCGTATCACGAAGTTTTCGGCAAGTTGCAGAGTGATTTAGCGGCAGGAACACCTTTGATAGGAACTACGGTGCCGACACAAACGGTCACAACGATACAGAACGGTACACCAATCGTGCAGCAGGTACAACTCAACAAGTTTGAGATAAAAACAAGTGACGGCGAAGCTACGCCAGGTCCGAGTGGATCACCCGTTTCTGTAGGCAGTCACGCTTGCGAAGTCTGCGGCAAAATCTTCCAATTCAGATATCAGCTGATTGTACATCGAAGGTATCATACCGAGAGAAAGCCTTTTACGTGTCAGGTTTGCGGTAAAGCATTTACCACTGCGAACGACCTTACACGCCACGGAAAGTGTCATTTAGGAGGTTCCATGTTTACTTGTGCAGTGTGTTTCCACGTTTTTGCGAATGCACCCTCGTTGGAACGACACATGAAACGTCACTCTACGGACAAACCCTACAACTGTACAGTTTGCGGCAAGAGTTTTGCGAGGAAGGAGCATCTCGATAACCATACGAGGTGTCACACTGGCGAAACTCCGTACAGATGCCAGTACTGTGCAAAAACTTTTACGCGCAAAGAACACATGGTCAACCACGTGAGAAAGCACACAGGAGAGACACCGCACAGgtgtgacatttgcaaaaaatcatttaccAGAAAGGAACACTTCATGAACCACGTTATGTGGCATACTGGCGAAACGCCTCACCATTGCCAAGTGTGTGGCAAAAAGTACACGCGCAAGGAACATCTTGCCAATCATATGCGCTCGCATACCAATGATACGCCTTTCCGCTGTGAAATTTGTGGAAAATCATTCACGCGCAAAGAGCATTTTACGAACCACATAATGTGGCACACTGGCGAAACACCTCATCGTTGTGATTTTTGCTCGAAGACATTTACTCGTAAGGAGCACCTACTGAACCACGTGAGGCAACACACGGgAGAGACGCCCTTCCGGTGCCAGTACTGTCCGAAAGCGTTCACGCGCAAGGACCACCTGGTGAACCACGTAAGGCAGCACACGGGTGAGTCACCCCACAAGTGCCAGTATTGTACGAAATCGTTCACGCGCAAGGAACACTTGACGAATCACGTGCGTCAACACACAGGCGAGAGTCCACATCGCTGCCACTTCTGCAGCAAGTCCTTCACCCGCAAGGAGCACCTTACCAATCACGTGAGAATCCACACTGGGGAATCGCCGCATCGCTGCGAATTCTGCCAGCGTACCTTCACCAGAAAGGAGCATCTCAACAATCATCTGAGGCAGCACACCGGTGACTCTTCCCACTGCTGCAATGTCTGCAGCAAGCCTTTTACCAGAAAGGAGCACCTGATAAACCACATGCGCTGCCACACCGGTGAACGTCCATTCGTGTGCACGGAGTGCGGCAAAAGTTTCCCGCTGAAAGGCAACCTGCTCTTCCATATGCGCTCGCACAACAAAGGCAGCCAAGCCGAGCGCCCATTCCGTTGCGATCTCTGCCCCAAAGATTTCATGTGCAAAGGCCACTTGGTGTCGCATCGACGATCGCACTCGGACGAACGACCGCATCGCTGTCCTGACTGCGGCAAGACGTTCGTCGAGAAGGGCAACATGTTGCGACATCTTCGCAAACACGCTGCCGAGGGTCCGCCGACGCAAGTTGCAGGAGCTCTAACCCAACAGCAAGTTCCTTCCACCgctgcggctgctgcagcCGCCGTACTTGTCGGACATCCTCTGGCACAGCCCAGTGCTCCGCTGCCGCAACATACCGTCGTCGTACCCACCCCGCCAGGAGTGCTTGCCTCGTATTGA
Protein Sequence: MNSEQHALPATTQAQQEEVSGQGTTRTTYQGDVPTATTVNNVANNPSTSTDLRVGTVALASSVASSVAKYLVLTNLFPGPIPQVSVYPPNNKNAGGGKVQTTKETAVLLNQDVALTFTGPNQTSTSQQQTSVGRSNQQSTLQSVQVPVSLPGLSLDGAHLQTHLQAVHAQVQQQLQNQQQQQQQHHQQQAQLLQQVQALQQIQNHQNAQNAAQQANQNQNSSRDNKPKDEQPDNQGHSHVNNDHHQQAQELQQNLIHQQQQQQQQISVTIGGSATDNANPSEKIEKKEEIRQLNMAQFQVPDLKPGSHMMDIRTADGSIVKISAASDPDLAKTLGVDISQYINKGTVNVEDLNQINQLLAYHEVFGKLQSDLAAGTPLIGTTVPTQTVTTIQNGTPIVQQVQLNKFEIKTSDGEATPGPSGSPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTTANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHSTDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHRCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVAGALTQQQVPSTAAAAAAAVLVGHPLAQPSAPLPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00326554;
90% Identity: iTF_00326554;
80% Identity: -