Basic Information

Insect: Chouioia cunea
Gene Symbol: -
Assembly: GCA_030064505.1
Location: JAOPFQ010000004.1:7025901-7032357[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7.5e-05 0.006 16.9 1.4 1 23 421 443 421 443 0.96

2 16 1.5e-05 0.0012 19.1 1.9 1 20 449 468 449 471 0.94

3 16 3.3e-05 0.0026 18.0 0.8 1 23 477 499 477 499 0.98

4 16 6.1e-05 0.0049 17.2 4.4 1 21 505 525 505 527 0.95

5 16 1.9e-05 0.0015 18.8 4.6 1 23 533 555 533 555 0.99

6 16 1.9e-05 0.0015 18.8 5.3 1 23 561 583 561 583 0.97

7 16 7.2e-06 0.00057 20.1 7.1 1 23 589 611 589 611 0.97

8 16 7e-08 5.6e-06 26.4 2.7 1 23 617 639 617 639 0.98

9 16 5.2e-05 0.0041 17.4 6.7 1 23 645 667 645 667 0.97

10 16 1.5e-05 0.0012 19.0 6.7 1 23 673 695 673 695 0.98

11 16 2e-05 0.0016 18.7 9.1 1 23 701 723 701 723 0.98

12 16 2.6e-05 0.0021 18.3 7.5 1 23 729 751 729 751 0.98

13 16 0.00074 0.059 13.7 8.8 1 21 757 777 757 779 0.94

14 16 9.6e-06 0.00076 19.7 0.4 1 23 785 807 785 807 0.98

15 16 0.023 1.8 9.1 4.5 1 23 817 839 817 839 0.98

16 16 2.5e-07 2e-05 24.7 1.6 1 23 845 867 845 867 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7.5e-05	0.006	16.9	1.4	1	23	421	443	421	443	0.96
2	16	1.5e-05	0.0012	19.1	1.9	1	20	449	468	449	471	0.94
3	16	3.3e-05	0.0026	18.0	0.8	1	23	477	499	477	499	0.98
4	16	6.1e-05	0.0049	17.2	4.4	1	21	505	525	505	527	0.95
5	16	1.9e-05	0.0015	18.8	4.6	1	23	533	555	533	555	0.99
6	16	1.9e-05	0.0015	18.8	5.3	1	23	561	583	561	583	0.97
7	16	7.2e-06	0.00057	20.1	7.1	1	23	589	611	589	611	0.97
8	16	7e-08	5.6e-06	26.4	2.7	1	23	617	639	617	639	0.98
9	16	5.2e-05	0.0041	17.4	6.7	1	23	645	667	645	667	0.97
10	16	1.5e-05	0.0012	19.0	6.7	1	23	673	695	673	695	0.98
11	16	2e-05	0.0016	18.7	9.1	1	23	701	723	701	723	0.98
12	16	2.6e-05	0.0021	18.3	7.5	1	23	729	751	729	751	0.98
13	16	0.00074	0.059	13.7	8.8	1	21	757	777	757	779	0.94
14	16	9.6e-06	0.00076	19.7	0.4	1	23	785	807	785	807	0.98
15	16	0.023	1.8	9.1	4.5	1	23	817	839	817	839	0.98
16	16	2.5e-07	2e-05	24.7	1.6	1	23	845	867	845	867	0.98

Sequence Information

Coding Sequence: ATGAACAGTGAGCAACATGCTCTGCCAGCGACAACGCAGGCACAAGAGGATATAAATGGTGAGGGCAATCGTGCCTCTTACCAAGGTGATGTGCCAACAACAACTATCATCAACAATGTAGCAAACAATCCAAATGTATCCACAGACCTTCGTGTAGGTACTGTAGCAATAGCATCCTCAGTAGCTTCCTCTGTAGCTAAATATTTGGTCCTTACCAATTTATTCCCTGGACCGATACCTCAGGTATCAGTTTATCAACctaacaacaaaaattctgGGAGTGGTAAAGCCTTAACTACCAAAGAAACAGCTGTTGTATTGAATCAGGATGTAGCGCTAACTTTCAGTGGACCTAACCAAACTTCTACTTCACAACAGCAACCGTCTGTTAGTAGAAGTAACCAACAGAACACCTTACAATCTGTTCAGGTCCCAGTCTCTCTTCCAGGACTAAACCTTGATGGAGCTCACTTACAAACACATCTACAAGCAGTGCATGCCCAAGTACAACAACAGCTACAAaaccaacagcagcaacaacatcaacaacaacaagcacAATTGTTACAACAAGTCCAAGCTCTacaacaaattcaaaatcatcaaaatGCTCAAAACTCAGCACAGACAAGCCAAAATCAGAATTCATCTAGAGATAACAAAACTAAGGAAGAACAAGCAGATAATCAAGGACATTCTCATGTAAATAACGATCATCATCAACAAACTCAGGAATTGCAACAAAATTTGATacatcagcaacagcagcaaatTAGTGTTACAATTGGTGGTGGTCCTACAGATAATGCTAATCCCAATGATAAAGTTGAAAAGAAAGATGAGATACGCCAGTTAACTATGGCTCAgTTTCAAGTTCCTGACTTGAAGCCAGGAAGTCACATGATGGACATTCGAACTGCGGATGgttctattgtaaaaataagtgCTGCAAATGATCCTGATCTCGCCAAAACCTTGGGTGTTGATATATCTCAGTACATCAACAAggGAACAGTAAACGTCGAAGAATTAAACCAAATAAATCAACTGCTAGCATATCACGAAGTTTTCGGCAAGCTACAGAGTGATCTAGCTGCAGGAACGCCTTTAATAGGGGGTCCAGTGCCGACACAAACTGTTACAACAATACAAAATGGTACACCAATTGTACAGCAAGTGCAACTCAAcaagtttgaaataaaaacaagtgaTGGTGAAGCTACACCTGGTCCCAGTGGATCACCTGTTTCTGTAGGTAGCCATGCTTGTGAAGTTTGCGGCAAGATCTTCCAGTTCAGATATCAGCTGATTGTACATCGAAGGTACCATACAGAGAGAAAGCCTTTCACCTGCCAGGTTTGCGGGAAAGCATTTACCACTGCAAATGATCTAACACGCCACGGAAAGTGTCACTTAGGAGGTTCCATGTTCACTTGTGTTGTGTGTTTCCACGTTTTTGCAAACGCCCCTTCGTTAGAACGACACATGAAACGTCACGCTACAGACAAACCCTACAATTGTACAGTTTGCGGTAAGAGCTTTGCAAGGAAGGAACACCTTGATAATCATACGAGATGTCATACCGGCGAAACTCCATACAGATGCCAATACTGTGCAAAAACTTTTACACGTAAGGAACATATGGTTAACCATGTGAGAAAGCACACAGGAGAAACACCTCACAGATGTGACATTTGCAAAAAGTCATTTACCAGAAAGGAACACTTTATGAACCATGTGATGTGGCATACTGGCGAAACTCCTCATCATTGTCAAGTATGTGGCAAAAAATACACGCGCAAGGAACACCTTGCCAATCATATGCGCTCGCATACCAATGATACGCCTTTCCGCTGTGAAATCTGTGgaAAATCGTTTACCCGTAAAGAGCACTTCACGAACCACATAATGTGGCACACAGGCGAAACTCCTCATCGTTGCGATTTTTGTTCGAAGACATTTACTCGTAAGGAGCACCTACTGAACCACGTGAGGCAACACACGGGTGAGAGTCCGCACCGCTGTAGCTTTTGTTCGAAATCATTTACGAGAAAGGAACACCTCGTTAACCACATCCGCCAACACACAGGCGAGAGTCCACATCGCTGCCACTTCTGCAGCAAGTCCTTCACGCGTAAGGAACATCTCACAAATCATGTGAGAATCCACACCGGAGAATCGCCTCATCGTTGTGAGTTCTGCCAGCGCACTTTTACAAGAAAGGAGCATCTCAATAATCATTTAAGGCAACACACTGGTGACTCTTCTCATTGCTGTAACGTTTGCAGCAAACCTTTTACCAGAAAGGAGCATCTTATAAACCATATGCGCTGCCACACTGGTGAGCGCCCATTCGTTTGTACGGAGTGTGGCAAGAGTTTCCCATTGAAAGGCAATCTACTCTTCCATATGCGCTCGCACAACAAAGGTAGCCAAGCCGAGCGCCCGTTCCGTTGCGATCTCTGCCCCAAAGATTTCATGTGCAAAGGTCACTTGGTCTCGCATCGACGATCGCACTCTGATGAGCGGCCGCATCGTTGCCCCGATTGCGGTAAAACTTTCGTTGAGAAAGGCAACATGTTACGACACCTTCGCAAACATGCTGCTGAGGGTCCACCAACTCAAGTACCAGGAGCACTCACACAACAGCAAGTTCCATCTACCGCTGCCGCAGCCGCAGCTGCCGTACTTGTCGGACATCCTCTGGCACAGCCTAATCCTCCGTTGCCACAACATACGGTAGTCGTACCCACTCCGCCGGGAGTGCTTGCCTCGTATTGA
Protein Sequence: MNSEQHALPATTQAQEDINGEGNRASYQGDVPTTTIINNVANNPNVSTDLRVGTVAIASSVASSVAKYLVLTNLFPGPIPQVSVYQPNNKNSGSGKALTTKETAVVLNQDVALTFSGPNQTSTSQQQPSVSRSNQQNTLQSVQVPVSLPGLNLDGAHLQTHLQAVHAQVQQQLQNQQQQQHQQQQAQLLQQVQALQQIQNHQNAQNSAQTSQNQNSSRDNKTKEEQADNQGHSHVNNDHHQQTQELQQNLIHQQQQQISVTIGGGPTDNANPNDKVEKKDEIRQLTMAQFQVPDLKPGSHMMDIRTADGSIVKISAANDPDLAKTLGVDISQYINKGTVNVEELNQINQLLAYHEVFGKLQSDLAAGTPLIGGPVPTQTVTTIQNGTPIVQQVQLNKFEIKTSDGEATPGPSGSPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTTANDLTRHGKCHLGGSMFTCVVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRKEHLVNHIRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHRCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVPGALTQQQVPSTAAAAAAAVLVGHPLAQPNPPLPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734906;
90% Identity: iTF_00734906;
80% Identity: -