Gnig004495.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- SUB1_1
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000021.1:6368113-6369074[+]
Transcription Factor Domain
- TF Family
- PC4
- Domain
- PC4 domain
- PFAM
- PF02229
- TF Group
- Unclassified Structure
- Description
- This domain is found at the C-terminal end of Activated RNA polymerase II transcriptional coactivator p15 from humans, YdbC from Lactococcus lactis, and other PC4 family members. p15 has a bipartite structure composed of an N-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain [1-4]. Activity is controlled by protein kinases that target the regulatory domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.3 1.2e+04 -3.0 0.1 24 33 17 27 17 29 0.75 2 2 1.6e-28 6.5e-24 84.3 0.1 1 51 116 166 116 167 0.98
Sequence Information
- Coding Sequence
- ATGCCGAAATCCAAGGAAATGATTTCTGATAGCGATTCTGGCAGTGTTGAGTACACAgttgagGAGGACGGGGAGGAGAAAGTGCCCATTGAAAAGAGGCCAAAGAAGCCTGCCATGAAAAGGAAGCAGGACAGCTCTGACAGTGAATCTGTATCTGAgGAGGAAGTGAAACAGAAGAGGAAGCCAAAGAAGgttgagaaaaagaagcagGAGAGCTCTGGCAGTgagtcgGATGATGACTCAGTATCAAAGAAGCGTCCAGCGAAAGGTAAGGTAGATGATGCAccaaagaaaaagacaaaaacagAAGGTTCGATGCAAAAGAACAATCAAGGTGAAGTATTCTGGGATTTGGGTGCCACCAAACGTATTACTGTTCGTTCCTTCAAGGGCAAATTGCTCATTGATATTAGAGAATTCTATGATGATGATGGGCAAATGAAACCTGGCAAAAAGGGAATTGCCTTGCAGGTGGCCAACTGGAATGCTTTAAAGTCTGTTTTCGATGAAGTAGATAATTATGTCAAATCCCAGTAA
- Protein Sequence
- MPKSKEMISDSDSGSVEYTVEEDGEEKVPIEKRPKKPAMKRKQDSSDSESVSEEEVKQKRKPKKVEKKKQESSGSESDDDSVSKKRPAKGKVDDAPKKKTKTEGSMQKNNQGEVFWDLGATKRITVRSFKGKLLIDIREFYDDDGQMKPGKKGIALQVANWNALKSVFDEVDNYVKSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -