Fvar003557.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- prdm10
- Assembly
- GCA_011392965.1
- Location
- WNWW01000191.1:563423-568898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.066 12.9 0.1 2 23 522 543 521 543 0.96 2 11 0.0013 0.08 12.7 0.2 2 23 556 577 555 577 0.96 3 11 0.0062 0.38 10.5 3.8 1 23 594 616 594 616 0.91 4 11 0.0041 0.25 11.1 2.6 2 23 625 646 624 646 0.96 5 11 0.00012 0.0077 15.9 0.3 1 23 653 675 653 675 0.98 6 11 0.00046 0.028 14.1 1.8 1 23 682 704 682 705 0.95 7 11 0.00027 0.017 14.8 1.7 1 23 710 732 710 732 0.98 8 11 1.6e-05 0.001 18.6 4.1 1 23 738 761 738 761 0.96 9 11 0.0012 0.071 12.8 1.7 1 23 794 817 794 817 0.97 10 11 2.5e-05 0.0016 18.0 2.4 1 23 839 862 839 862 0.97 11 11 0.001 0.064 13.0 3.4 2 23 899 921 898 921 0.96
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCTAACTCCTTTGAGATACACAATATCGATAAATCTGACAATTCAGTAAATTGGCCTACAGATCATTCTTTTCCTTCATCAACATttgaacaacaaaaaaaaatgaataataataaactgttatttttaactgTGGAATATGTGGAAGATCCATCGCGGGAATACTCCCGTTTATTTCCTACATACGaacaagtttctttttctcctagACCTTCGTCTCCACTTTCAGATTTTGAACACCGCGTTAGTCCTCTTGATCCCAATATGAGTTCAGCTGCTAGATATTCACCAACTCCAGTACAACTTCCACCATCTCCTTTTCATAATTCTGTTGTGGTATTACAAGATTCTTCTTCTCCATTAATATCCTCAACTGAGTCAAATGAAAGAACAAATGTTAATTATGTTTCCCAACTAACGCATCCAATTGATACACCGAATGTACAACAATCAGATAATTCTACTGACTTTGTTGCTAATGAAAATGAGGAACAACTAGTGTCTAGCGTTGGTAGTGAATTGATTCTTATGCAAGagtCAAATTCCGGATTAGAATCAGCAACAGCTCCATTGATGTTGACAGGCATACCAAGTACAGATTTTACATTAAGTAGAGATTTTCTTGTTATGCAAGATGACCAAATGAATGTtataaattcgtttaaaaCACAAAACCTTGATGTAGATGATTCTACACATCTTTCATCAACTgcagaaaattcaaataaagaaaataatgcaGATCCTTTAGCTGCATCTAATGaacaagaaattaatgaaattttaatacctactgaagaaaaaaaagataatgaaaaaaagaatgtgaGACGTTCAAAGCGTcgtataaatgataaaaagaatttttGTTGTGATGAATGTGATGATATGTGTACTGGTGATAATTGCACTTCACATAATGTATGTACAATAGCAGATCAGCCGGTACCATCTCGTGCTATAGCAACACTGCCAGGATCGTATCTTTCTATAAACAAGTTATCCAGTTCTGAAATTATATCAGGCGGATCAGATTATGGAGTGTTTGCAAAACGTTACATACAAAAACGTACTCAATTTGGACCCATAGAGGGTATCTTATATCCTTATGATGGTACACCATTTAAGAATGAATTGCCATTGCTTtatgaaactgaaaataaagaatttttaaaagtagatgtttcaaatgaaaaTGCTTCAAATTGGATGCGTTTTGTTAGACCTGCATTAACATATAAAGATCAAAATTTGGTAATTTGTCAACAACGTGATGGAATAGTATTTTTGACTACAAGAAGTATTTTAccaaaagaagaattaaaagctGGTCCTAGTACTGACTATgcaattcgtagaaatttaataccgCTCAAATCTACgcaagaaataaaagatgataaagaGCACAAAAATCAGATATCTACTTGGTCACGACTAGATGATAATCATTCCCGACGTATAAAAGTATTTCGcggtagaaatttaaaagagaaagaaaattcaagacaaaataattctaaagaaTGGAAATGTTCTGTGTGtggtttaatttttagaaaaccacttttacttaatttacaTACTCTTGTCCATGGttctgataaaattaaaactaaaattcaaTCTACAGTTTGTCCACAATGTGGACTacagtttcaaaaagaaaaagaattaatcaaTCATATTTCCCAACATGGGAGATTATCTTTAAAGAAAGCAAAAAGATTGACTTCTTTGTCTACATATAAGTGTTCAATGTGTTATAAACGTTTCGCAACAAAAGTACGATTGCAACAGCACTGCTTAGTGCATGGTGCTGAAGACCAAAAACCACTGCCATGCAATATTTGCTTCAAAAGATTCATGAATAATTCAGCACTCTCTTGTCACTTAAAAACACACAGAGAAAATAAACAAGTATTCGAATGTCCAATGTGCCGACAATTATTTAGTCAAAGCATAATGTTAAAAGATCATATTGAAactcataaaaatgaaaatggcaCGTTTAGCTGTCCCTACTgccaaagaatatttattaaatattcggTTATTCGTAAACATATTAGAGCACATCATTGTGAAAGAAAACACAAATGTCAAATTTGTGCAAAGCGATTTGCTACAGtagataaattacaaatgcaTCTACTAAAACATTCTGATCATAgagaATTTCACTGTGCAAATTGtggaaaacaatttaaaagaaaagacaaattaaaagaacatatgacaaaattacataattcgCAAACAGCTACTGAAGAACAAATGTCACAAATTACacaaactaaaaaatttgttccaaaaGTAAACCCTAATGATTACAATCGTTTCGTTTATAAATGTCATCAATGTTTGGTGGGTTTTAAACGAAGGGGAATGCTTGTGAATCATTTGGCAAAAAGGCACCCAGATGTTGCACCAGAATCTGTGCcagaattaaatttaccaaTTTTACGTCAAACACGAGATTATTATTGCCAATATTGTGATAAGGTCTATAAAAGTAGCAGTAAACGTAAAGCACATATCATGAAAAATCATCCAGGAGCTGCTTTACCACCAAGTAATCGACAGAAAGAGTCAGATTACTCCGATTTACCAAATCCAACATTTAGTCAAACTGTTGGTAGCATTACAACTACACCACAGAGTTGTCAGTGGTGTCATAAACAATATGCTAGTAAGgcAAAACTTTTACAAcatcaaagaaaaaagcaCTCTAATTTAATGGAGCCGGCTGATCAAGTACCGCGTTCACGTAATCGACAGAATCAAAACCAGCCACCGGTACTTATTGAAGATCACTTTGTGTTGTCCGATTATATTCAGACGTGTGAAACAAATTCAGATTTCTTTAAACCaagaataatcaaaatatctgATGATGTTGATCTAATAAGCAATGGGTTAGAAATAGTTGGGCAACAATTTGTTCGTATGCGCGACATACGCTGA
- Protein Sequence
- MDPRGPPEGAPANSFEIHNIDKSDNSVNWPTDHSFPSSTFEQQKKMNNNKLLFLTVEYVEDPSREYSRLFPTYEQVSFSPRPSSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQDSSSPLISSTESNERTNVNYVSQLTHPIDTPNVQQSDNSTDFVANENEEQLVSSVGSELILMQESNSGLESATAPLMLTGIPSTDFTLSRDFLVMQDDQMNVINSFKTQNLDVDDSTHLSSTAENSNKENNADPLAASNEQEINEILIPTEEKKDNEKKNVRRSKRRINDKKNFCCDECDDMCTGDNCTSHNVCTIADQPVPSRAIATLPGSYLSINKLSSSEIISGGSDYGVFAKRYIQKRTQFGPIEGILYPYDGTPFKNELPLLYETENKEFLKVDVSNENASNWMRFVRPALTYKDQNLVICQQRDGIVFLTTRSILPKEELKAGPSTDYAIRRNLIPLKSTQEIKDDKEHKNQISTWSRLDDNHSRRIKVFRGRNLKEKENSRQNNSKEWKCSVCGLIFRKPLLLNLHTLVHGSDKIKTKIQSTVCPQCGLQFQKEKELINHISQHGRLSLKKAKRLTSLSTYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHRENKQVFECPMCRQLFSQSIMLKDHIETHKNENGTFSCPYCQRIFIKYSVIRKHIRAHHCERKHKCQICAKRFATVDKLQMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKLHNSQTATEEQMSQITQTKKFVPKVNPNDYNRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESDYSDLPNPTFSQTVGSITTTPQSCQWCHKQYASKAKLLQHQRKKHSNLMEPADQVPRSRNRQNQNQPPVLIEDHFVLSDYIQTCETNSDFFKPRIIKISDDVDLISNGLEIVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00232789;
- 90% Identity
- iTF_00983779;
- 80% Identity
- -