Basic Information

Insect: Frieseomelitta varia
Gene Symbol: -
Assembly: GCA_011392965.1
Location: WNWW01000535.1:415146-421969[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2.1 1.3e+02 2.6 7.3 2 23 246 268 245 268 0.97

2 21 0.99 61 3.6 2.8 1 23 318 340 318 340 0.92

3 21 0.24 15 5.5 1.4 1 23 389 411 389 411 0.98

4 21 0.018 1.1 9.1 0.2 1 20 468 487 468 489 0.93

5 21 7 4.3e+02 0.9 3.6 1 22 501 522 501 524 0.77

6 21 0.00058 0.036 13.8 0.2 2 23 530 551 529 551 0.94

7 21 0.0002 0.012 15.2 0.3 1 23 597 619 597 619 0.97

8 21 0.00049 0.03 14.0 0.1 1 23 625 647 625 647 0.97

9 21 9.4e-08 5.8e-06 25.7 0.7 2 23 691 713 691 713 0.96

10 21 0.075 4.6 7.1 1.9 2 23 721 743 720 743 0.84

11 21 0.0008 0.049 13.3 1.5 2 23 752 774 751 774 0.95

12 21 9.6e-05 0.0059 16.2 1.3 1 23 783 805 783 805 0.96

13 21 0.0038 0.23 11.2 0.3 1 20 854 873 854 873 0.97

14 21 0.19 12 5.8 0.1 1 23 892 914 892 914 0.96

15 21 7.1e-05 0.0044 16.6 1.7 1 23 928 950 928 950 0.97

16 21 0.048 3 7.7 4.6 2 23 973 995 973 995 0.90

17 21 0.012 0.74 9.6 1.5 2 23 1047 1069 1046 1069 0.93

18 21 0.0036 0.22 11.3 0.6 2 23 1098 1120 1097 1120 0.92

19 21 0.14 8.7 6.3 0.1 1 23 1127 1151 1127 1151 0.95

20 21 0.036 2.3 8.1 0.9 1 23 1156 1179 1156 1179 0.97

21 21 0.035 2.2 8.1 0.7 2 23 1209 1231 1209 1231 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2.1	1.3e+02	2.6	7.3	2	23	246	268	245	268	0.97
2	21	0.99	61	3.6	2.8	1	23	318	340	318	340	0.92
3	21	0.24	15	5.5	1.4	1	23	389	411	389	411	0.98
4	21	0.018	1.1	9.1	0.2	1	20	468	487	468	489	0.93
5	21	7	4.3e+02	0.9	3.6	1	22	501	522	501	524	0.77
6	21	0.00058	0.036	13.8	0.2	2	23	530	551	529	551	0.94
7	21	0.0002	0.012	15.2	0.3	1	23	597	619	597	619	0.97
8	21	0.00049	0.03	14.0	0.1	1	23	625	647	625	647	0.97
9	21	9.4e-08	5.8e-06	25.7	0.7	2	23	691	713	691	713	0.96
10	21	0.075	4.6	7.1	1.9	2	23	721	743	720	743	0.84
11	21	0.0008	0.049	13.3	1.5	2	23	752	774	751	774	0.95
12	21	9.6e-05	0.0059	16.2	1.3	1	23	783	805	783	805	0.96
13	21	0.0038	0.23	11.2	0.3	1	20	854	873	854	873	0.97
14	21	0.19	12	5.8	0.1	1	23	892	914	892	914	0.96
15	21	7.1e-05	0.0044	16.6	1.7	1	23	928	950	928	950	0.97
16	21	0.048	3	7.7	4.6	2	23	973	995	973	995	0.90
17	21	0.012	0.74	9.6	1.5	2	23	1047	1069	1046	1069	0.93
18	21	0.0036	0.22	11.3	0.6	2	23	1098	1120	1097	1120	0.92
19	21	0.14	8.7	6.3	0.1	1	23	1127	1151	1127	1151	0.95
20	21	0.036	2.3	8.1	0.9	1	23	1156	1179	1156	1179	0.97
21	21	0.035	2.2	8.1	0.7	2	23	1209	1231	1209	1231	0.94

Sequence Information

Coding Sequence: ATGTCCACGATGGACGAGGTGGTGGAGTTGCAAGATATGGAAAACGTGTGCAGGCTCTGTTTATCCACCGACGAGCCAAAATTGTCGGTGTTCGAAACGGAAGACTCTCTGTTGTCGATGGCTAGCAAGATACAAGCTTGCCTATCGATTCAGATTTCAACGACAGACAAATTGTCAACACAGATATGCGCACAATgtgttaaaaatgtaaatcaatGGCACAGTTACAAAGAAACCTGTTTAAGTTCACAAGAGAAGTTGCATCAATGGCTGGAACGGCAGCATATGCAACAAAGTCCTATGGTTGTAACCATCAAGGATGAACCTGTTGATCTGGACTTTTATGAAGACAACATCGAAATCATTTCTGAATCTACCACTGATTCAAATTTGGAAGTCACTAATCTTGAAGAGAATACGAATCACTTAGAAGATAGTGCTCAGAAAGTAACTGATGGTGATGAAGTAGCTGTAGATGAAGATCAACCAGTCTTGATGAAAGacgtaaatatttctataaaaccTGAACTACAAGATGATTATGATACTGATTGTACTATAGAAATAGAATCGGTTACTGGTAATGAACTTGTCGCAAATCCTCTTGCAAGCTCAGAGGAGAGAATCATGGAAGCTGATTCCACTCAGAAATCCAATGCATCTGCCTCAGCAAACAAGAAAAAAGCCAGAAGAGGTCCTCATACTCACTTTAGGGGTGCACGTATTTTTAAACAGAAGTGTGTACATTGtcaaattaatttgcattCTAAGCATTCTTATGCAAAGCATATGCAAAGATTTCACACTGACAAACAGAATGGCAGTGTCAATAAACCGGAATTAAAAGATGAGGAAGAGCTTGTCGAAGATCTGGAGGATGAATTAATGAGTATGGAAAAGGATGCTCCGTTAACACAAGTGCAGCAAAATATTATTGGACAATTGAAGACATTTTCATGCTACTCCTGTCAACAAAGCTTCAGCGATCGCAGAAGCACGCTTTTCCATATTCGTCAGCATATGCCCGACTTGAGACCACACACGTGTATCGCGTGTTTGACAGAGTTCCCAGATCGATCAATGTATAAGTTACATTGCGGAGCGTCGTTTGAATGTGCAATGAAAATCGCCCTTGTTGTACCGAAACAAGGCGAAGAAAAATACTTCACGTGTAATATGTGTTTACGTCCTATGCAAAACAGGAAACAATTGCTTAGCCATTTGTCAAAACATTCGGATAAACAGTACGAACAACTGGTATCCCCGACACGATTTCCTCCTAAATTGAAACCAGTGACTCCTCTTCCACCCTTGAAGCAAGAATCACGAAAAAGAGCGTCcgaagaaaattatactttaaacaTACCCAATCCTTATAAAAATGGCGATCCTGCGCATAATCATATATGTGACTTGTGTGGTATGATTTACAGATATAAGCCAAATATGCTGAGGCACAGGGATTTATGTCTACGTTTGTCATCAGATGTTAGGACATCCTACAGATGTGTTCACTGTGGCATGACATATCTGgtattcaaaaaattccattCTCATATTACACAGGAgcataaaaagaaagatctcATATGTTCTGAATGTGGCAGCAAATTCAAATCTCCTAGTAATTATTTGGAACATCGCGAGGGACATCGTATCAATCGTGCGAAAAAACACTCTCTTGATCCGAAAAGCGATTTAACGAAGATCCCGCAgaacatttcaaataaagaCTGGGACACATTTGAGGCTGAAGTAAATGCTAAAAAACTGTCCGACAGTAATCAGTACAGCTGTGCTCTCTGCAATTTGGAATTTACTACCAGAGCCGAGTTAACAGAACACAGAAATCTACATCTAAAAGTGAAGATTTATTCTTGCGTCATCTGTCGTAGCATGTTCAGCAGCGCAGGTGCTTTGGAAATTCACATGAAGGATCATGGCATAGAAGATCCGAATGAAAGAAATGCAAACAGCTCCTGCTTAGAGTATGGTACGGTGGAAGAAGAATCAAAAGATTCAAACTCAATGAACGTAAGTGCCACTTCGGATCCTGGTGATAAGAAAAACGAGTGTAATACGTGTggcaaaatattctcaaatagCGCAAATCTTAAAAGACATATAAGAAATCTCCACAACGTTACCAGAGGCCACCTCAGCTGTTCCTACTGTTGGCGAACATTCAAGAGCAAAGAAACACACGACCGGCACGTTACAATCGATCATCTAAAATCCTCAAAATCCATGCTTCGATGTTCTCGATGTCCAAAGACTTTCTTCTTCCAAGCCAATCTGAATCTTCATTTTGAGACTACGCATGCCGAGAAATCATTTCCAGTTGGCCACAAATGCGATATTTGCGGTAAAACTTTCATGGAAGAAACATCTCTGAAAATACACAGGAGCTGGCACAATCGAGCAAACTCTAGACTGAGCTTGTACTTCATGAAGAAAGAAGATCCAAAACAGGAGGAACCTTTGAATTCTAATACAACCCGGCCAGCGAGAGCGCGAAAATCTTACCCGAATTCACCTTCAACAAAACCTAATGGTAATTTCCAATGTCAAGTCTGCAGCGAAAAGTTCAATGATGTAACAGAACTGAGGACACACTTATGGGACGTACACTGTGCACGCagcaaaaatgagaaaaatttcccTGATGGCGAGTTCAATTGTGAACTTTGCATGAATGTTTTCCCAGATAAGGAAACGTTGGATATGCATTTGCAATGGCATAAAGCTCAACCAATTCTCAACGATATAACAAAATCTGATTACACGTGTGACATTTGTGGGAAATCATACAGCTCGAAGAAGATACTGTCCAGACACAAGAAGCTTCACAAATCCACAATTGCAGCTGCTGCGAAGTTGCAATCAGCTGGCAAAAACTTAGCTAGCAGTCAAGCTTCATGCACCGTTTGTCACAAGGTGTTTAACAATAATCGCTTGCTCCAGTGTCATAGACTGAACGTGCATTCAAACATATTCAACCAACAATCTCAACAGGTACAAAACAACAAAAGAAGATCATCTCAGGAAGAGCCAAGAgctaaaagaataaaattagagCAAGAGGACAGGCAAACACCTTCTGCCATGGATGCTATGAGCGCGGGAAAAAAATCCGTCATGTGCCACGTTTGTAGGAAATTCTTCGCAAACATGAGCGTGCTTTATAAGCACAAACAGTTGGTACACAAAACTCATGCGAATCtggtaaaaaatttctctaaatCATACCAAATGGAATGCATACCGTTGCCCAGCAACGATGGCAAAGTCTCTTGTAACGTTTGTTACAAAAAATTCCCTGGCGTGTCGAATTTGCGTCAGCACTTTACTGTAAAACACAAGAATGCCCCTGTCAAGTATGCTTGTACTGTAGATGGATGCAAACTCACATTTCCTACACCGATGATCCTAAAGAACCACGAAATGTCGCACACCAGCATCATCTTCAGTTGCAACTTATGTAACAGGCATGTGTTCAACAGGCCTGCGATGTCGAATCACATACTGACGGTACACAACATCGTCTACAACGCTGAGAACAGCAAAAACTTCCACAGAGAGCTGGATTTGGGCAAATACGTGGTAGAGGGTGCAGTAGATGCTACCTGTCCTCAATGCAAGATCAAGTATCCCAACAACAGGGCTATGAAGATTCACTACTTCAAGTATCACGAGAACCCAAACGAATAG
Protein Sequence: MSTMDEVVELQDMENVCRLCLSTDEPKLSVFETEDSLLSMASKIQACLSIQISTTDKLSTQICAQCVKNVNQWHSYKETCLSSQEKLHQWLERQHMQQSPMVVTIKDEPVDLDFYEDNIEIISESTTDSNLEVTNLEENTNHLEDSAQKVTDGDEVAVDEDQPVLMKDVNISIKPELQDDYDTDCTIEIESVTGNELVANPLASSEERIMEADSTQKSNASASANKKKARRGPHTHFRGARIFKQKCVHCQINLHSKHSYAKHMQRFHTDKQNGSVNKPELKDEEELVEDLEDELMSMEKDAPLTQVQQNIIGQLKTFSCYSCQQSFSDRRSTLFHIRQHMPDLRPHTCIACLTEFPDRSMYKLHCGASFECAMKIALVVPKQGEEKYFTCNMCLRPMQNRKQLLSHLSKHSDKQYEQLVSPTRFPPKLKPVTPLPPLKQESRKRASEENYTLNIPNPYKNGDPAHNHICDLCGMIYRYKPNMLRHRDLCLRLSSDVRTSYRCVHCGMTYLVFKKFHSHITQEHKKKDLICSECGSKFKSPSNYLEHREGHRINRAKKHSLDPKSDLTKIPQNISNKDWDTFEAEVNAKKLSDSNQYSCALCNLEFTTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCLEYGTVEEESKDSNSMNVSATSDPGDKKNECNTCGKIFSNSANLKRHIRNLHNVTRGHLSCSYCWRTFKSKETHDRHVTIDHLKSSKSMLRCSRCPKTFFFQANLNLHFETTHAEKSFPVGHKCDICGKTFMEETSLKIHRSWHNRANSRLSLYFMKKEDPKQEEPLNSNTTRPARARKSYPNSPSTKPNGNFQCQVCSEKFNDVTELRTHLWDVHCARSKNEKNFPDGEFNCELCMNVFPDKETLDMHLQWHKAQPILNDITKSDYTCDICGKSYSSKKILSRHKKLHKSTIAAAAKLQSAGKNLASSQASCTVCHKVFNNNRLLQCHRLNVHSNIFNQQSQQVQNNKRRSSQEEPRAKRIKLEQEDRQTPSAMDAMSAGKKSVMCHVCRKFFANMSVLYKHKQLVHKTHANLVKNFSKSYQMECIPLPSNDGKVSCNVCYKKFPGVSNLRQHFTVKHKNAPVKYACTVDGCKLTFPTPMILKNHEMSHTSIIFSCNLCNRHVFNRPAMSNHILTVHNIVYNAENSKNFHRELDLGKYVVEGAVDATCPQCKIKYPNNRAMKIHYFKYHENPNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417894;
90% Identity: iTF_01417839;
80% Identity: iTF_00734069;