Basic Information

Insect: Frieseomelitta varia
Gene Symbol: -
Assembly: GCA_011392965.1
Location: WNWW01000345.1:317237-322814[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00086 0.053 13.2 0.2 1 23 233 256 233 256 0.95

2 9 3.1e-06 0.00019 20.9 2.3 1 23 261 283 261 283 0.99

3 9 2.1e-06 0.00013 21.5 1.1 1 23 289 311 289 311 0.98

4 9 0.0029 0.18 11.6 0.8 3 23 319 340 317 340 0.93

5 9 1.7e-05 0.0011 18.5 2.8 1 23 346 368 346 368 0.93

6 9 5.1e-06 0.00032 20.2 1.1 1 23 374 396 374 396 0.98

7 9 0.00068 0.042 13.5 5.3 1 23 402 424 402 424 0.96

8 9 6.5e-08 4e-06 26.2 0.8 1 23 430 452 430 452 0.98

9 9 0.0016 0.099 12.4 1.3 2 23 461 482 460 482 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00086	0.053	13.2	0.2	1	23	233	256	233	256	0.95
2	9	3.1e-06	0.00019	20.9	2.3	1	23	261	283	261	283	0.99
3	9	2.1e-06	0.00013	21.5	1.1	1	23	289	311	289	311	0.98
4	9	0.0029	0.18	11.6	0.8	3	23	319	340	317	340	0.93
5	9	1.7e-05	0.0011	18.5	2.8	1	23	346	368	346	368	0.93
6	9	5.1e-06	0.00032	20.2	1.1	1	23	374	396	374	396	0.98
7	9	0.00068	0.042	13.5	5.3	1	23	402	424	402	424	0.96
8	9	6.5e-08	4e-06	26.2	0.8	1	23	430	452	430	452	0.98
9	9	0.0016	0.099	12.4	1.3	2	23	461	482	460	482	0.96

Sequence Information

Coding Sequence: ATGGAGAATAGGCCGGCGCCGCTCAGGTCCAGGCGGGTCTGTCGATTTTGCCTAACGGAAACTGAGCCACTTTCCTTTATCTATGAAAGGGATCACAGCAAACCATTTCAAGTGCCGCTTACGCTGCAGATCATGTCATGCGTCGCCATCGAGGTGTATGCAGCTGATGGAATGCCTCAAATGATATGCAGCATGTGCCGCTGGAATCTGGACAGATCTTACAAATTTAAACTTCAGTGCAAGAAAGCTGATGAAGCGTTAAGAGCTTATCCATTGTCTGGTGTATTACCAAGACCTTTTCCGCCAATTCCGAATGATCCTCCTGACATGAACAACAAACGACCTTCGGAACAAAGACCTCAAATTGAAGGAAGTAAGAAACCTCGAGTTGATAATGGTGATAGGGAAAGACGGGATacaagagacagagaaagggaTAGGGatagagaaagggaaagagaaagagaaagagaaagagacagggATCGtgatagagaaagagataggGATCgtgatagagaaagagaaagagaaagagaaagagagagagaaagagacaggcAAGTGGAGAAACAGAGGGACAAAGAGGATCAACATGATTTTTATGAAGAAGAACAAGATGCTGGTAGCGAAGGAGACCAAGATGCAAATAGCACTAAAGAAGAGCGAAAATTAGAACCAGGTGAGATAAGGGTACATGCATGCGATCAATGTGATCGTACGTTTCCTTTGCGGCAGGCTCTTGCTTTGCATATTCAAAGAGCTCATCGTGAtcgtaattataaatgtacagAATGTGACCGCATGttcttttctaaatatgaCCTTGGAAAACATATGACCACGCATTCAGAAGAGAAACCGTTCTCTTGTTCAATATGTAACAAACAATTCTCGCGAGCGAATTTACTGCAACGCCATGAGAAAGTTCATAGAGATGAACTGCGTTATGGTTGTCAGCATTGTGATCGCGAATTCTTCACTACCGAAGAATTAGAAAAGCATGAAGATTCCGTacataaaaaagagaaacctTTCCAATGTAATATTTGCAACAAATGTTTCACATACAAACAGGGTTTAGAACGACACGAGGTGCTGCATAACGAAGATAAGACTTTTGTTTGCGAATATTGTAAAGAAGCATTCCGTACAAGTACGAAATTAGCTCGTCACTTAACAACACATGCTGGACATCGGCCATATTTATGTAAGCTGTGCCCTCGTTCATTCCTCCTATCTCATCATTTAACGAGACATATGCGAACACACTCTGTAGAAAAACGTCACGTTTGTGAGGATTGCGGCAAAGCGTTCAAACGTAAAGAGAGTTTGGAAGTACATCAATTAACGCACACAAAACGCACAGGTATGGGATTGACGTGTGATGTCTGCCAGGAATCGTGCAGGAATAGGGCAGATTATGTTACACATATAAAACAACATATTGAAGCAGGTGAGAAAATGGGACCAGATGGATTACAACCAgacaataaaacaaaacttGATTTAGATTCTgacgaagaggaggaggaagaacaATATTCAGATGGAGACGATGATTATGAACCACCAGCGTATATTGTGAAAAAGCTTCCAAAGCCAACTAAACCGTCAGAAAGCGAAGAGGAACAAGAAAAatcagagaaagaagaaaatcaaaaagaaCAAGTAGTATACGTCAGACATAAAGATGGAAATATGATCAAAAAGACAATTAAAACTTTGATGCCTATTCAACGTAGAGAGGTACAAGATAGCAAGATGAAGCAAAGTCCAACTAGCAATCAGTCGCAATCGGCTACAAAACCTACACAGTCCAAACAGAATGAAGAATCTTCAAAGTCTTCCCGTGTAGATGAAACGGAAGCGCAAGttcaaaaaattgttgcaTCAGTGTTTAAAGAGCATAAAATACCTctaaaacatcaaaatgttCAAGAACAAAGTAAAGACTCATCTACACCTACGAATCAATCAAGACCTCAGCAAGGACAGAGTAGCTCACAAAATCAAGTTTCtataaaagatgaaaaatctgaaattccTGTGATAGTCAGTAGCACACCAAAAGCTGTAAACACAGTTAAAGTAATAAAGAGAATTGTTGTGAGAAAACCTACTGCTAGTACTGAAACATCTACTAGTACATCTGTAAAAGATGAGGATGCTACAAGTAGTAGTTCTCAAACACCTACTACAGGTCACAAAGTAACGAAAAGAGTAATTGTTCGTCGAATTATTCGTCAGGGAGATACCACCAGAGAAGTTATTATGAATCCCGATGGTACGATAATCGATCCAGCTGAATTAGCAAAGCTGCCAACTGGCAATGTTGTCAAGAGAGTTGTTGTAAAAAAACCACTTGATAAGCATCAGAGTTTGGTTCAAGCGGTGTTACAGTCATCCGCGGAACTTCGGCAACCATCTGCCACGATAAAAAGTAACGATACTGTATTGAGCGAATCTccgaaatttgaattgaaaacaTCTCAGTCTACAAATGCATTGCCTTCGATAACAAAACCAATTGTATGTACTGCACAGAAACCTACACTAGTGGTAGGAGATCaagaaactaaagaaaaattagaacaaCTGGAAAAGAGAGTAGAGCAACAAcgtttgaagattgaagaatTGGAGGCTCGAAAGCAACAAGAGTATGAACCTATCGAGGAAATGTCACCAGAACGTCACGACGAATCCGATGATGAACAACAATTGCCATTGAAGAGAGTGTTTGTAAAGAAGAAGCAAAGTATGTACGACGAAGAACAAGAATATAATGACAATGATGTAACAATAACTTCTATAACAACTTCAACAACATCAAAAGTAGAAGATATTCAGCCCGAATtaggaaaggagaaagaaaagattcaATCTGAAACGCAAGCAGAAAATATACCAAAGGATGTTTCTGCAATATCAAAATCAATTACTGTATCAACCGTAGTAGCAATACCAGCAATAACAACAACTACTACTGCTACTAACgctaaaaaagataataaaccATTAATAACCAGTTCCAAAGTttatggaaataaaaagattattgTTGTAAAATCAGAAGAAACATCAGAAGTGGAAGAAATGAGTCGCGAATTGTGCAGTATATTGGATTCAGCTGATTCTGTAGTCAAAATGCAGGAAACAGTTCTGAGTAATCTCACTCAGATATCTTCTCTTGGAGAATCTTCTTctcagaaaaattataatgataaaccAAAAGCTGGTCCATCTAATTCAGAAGAATATccacaaaaagaagaagtcgTTGTTGAAACTAATTCACATCCTGTCTCTATGGATGTATCAGATCCCCCAGAACCGGATTCCGTTAAAATGGAATCGGATTGCATCAAAATAGAATCTGACTCCATTAAAATGGAATCAGTGTCTGAAGAACAAATCATGGAACAACCtgaacaaaattcaaatttgactTTAGATGAGCAAGATCTTTCAGAGTCAACAGATATTTTTGAGCCATCGGATAATGTATTAGAGGTACAGAAGAGTCAATTGGAAGATTCTGTGATGGAACTCGATCATGAAACTCACACAATCAGTTTAAATGATACGAATGACAGCCAAGACAGTCTTGAAGACAAACTTCAGCAGATGGAAGGTTAA
Protein Sequence: MENRPAPLRSRRVCRFCLTETEPLSFIYERDHSKPFQVPLTLQIMSCVAIEVYAADGMPQMICSMCRWNLDRSYKFKLQCKKADEALRAYPLSGVLPRPFPPIPNDPPDMNNKRPSEQRPQIEGSKKPRVDNGDRERRDTRDRERDRDRERERERERERDRDRDRERDRDRDRERERERERERERDRQVEKQRDKEDQHDFYEEEQDAGSEGDQDANSTKEERKLEPGEIRVHACDQCDRTFPLRQALALHIQRAHRDRNYKCTECDRMFFSKYDLGKHMTTHSEEKPFSCSICNKQFSRANLLQRHEKVHRDELRYGCQHCDREFFTTEELEKHEDSVHKKEKPFQCNICNKCFTYKQGLERHEVLHNEDKTFVCEYCKEAFRTSTKLARHLTTHAGHRPYLCKLCPRSFLLSHHLTRHMRTHSVEKRHVCEDCGKAFKRKESLEVHQLTHTKRTGMGLTCDVCQESCRNRADYVTHIKQHIEAGEKMGPDGLQPDNKTKLDLDSDEEEEEEQYSDGDDDYEPPAYIVKKLPKPTKPSESEEEQEKSEKEENQKEQVVYVRHKDGNMIKKTIKTLMPIQRREVQDSKMKQSPTSNQSQSATKPTQSKQNEESSKSSRVDETEAQVQKIVASVFKEHKIPLKHQNVQEQSKDSSTPTNQSRPQQGQSSSQNQVSIKDEKSEIPVIVSSTPKAVNTVKVIKRIVVRKPTASTETSTSTSVKDEDATSSSSQTPTTGHKVTKRVIVRRIIRQGDTTREVIMNPDGTIIDPAELAKLPTGNVVKRVVVKKPLDKHQSLVQAVLQSSAELRQPSATIKSNDTVLSESPKFELKTSQSTNALPSITKPIVCTAQKPTLVVGDQETKEKLEQLEKRVEQQRLKIEELEARKQQEYEPIEEMSPERHDESDDEQQLPLKRVFVKKKQSMYDEEQEYNDNDVTITSITTSTTSKVEDIQPELGKEKEKIQSETQAENIPKDVSAISKSITVSTVVAIPAITTTTTATNAKKDNKPLITSSKVYGNKKIIVVKSEETSEVEEMSRELCSILDSADSVVKMQETVLSNLTQISSLGESSSQKNYNDKPKAGPSNSEEYPQKEEVVVETNSHPVSMDVSDPPEPDSVKMESDCIKIESDSIKMESVSEEQIMEQPEQNSNLTLDEQDLSESTDIFEPSDNVLEVQKSQLEDSVMELDHETHTISLNDTNDSQDSLEDKLQQMEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141374;
90% Identity: iTF_01417887;
80% Identity: -