Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: stc
Assembly: None
Location: ML762986.1:861306-872263[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2 1.6e+04 -4.3 1.6 15 19 462 466 461 466 0.81

2 12 0.016 1.3e+02 2.6 0.3 4 10 495 501 494 502 0.97

3 12 2.5e-07 0.0021 17.9 13.9 4 18 514 528 512 529 0.94

4 12 9.6e-09 7.9e-05 22.5 10.9 1 18 565 582 565 583 0.97

5 12 4.2e-10 3.4e-06 26.8 13.9 1 19 623 641 623 641 0.98

6 12 0.00051 4.2 7.4 13.2 4 18 692 706 685 707 0.85

7 12 1.5 1.3e+04 -3.7 2.0 5 10 736 741 736 741 0.93

8 12 1.5 1.2e+04 -3.7 12.4 1 18 747 768 747 769 0.83

9 12 8.7e-10 7.2e-06 25.8 13.8 1 19 774 792 774 792 0.98

10 12 2 1.6e+04 -15.8 20.6 9 19 838 849 821 849 0.73

11 12 2.2e-05 0.18 11.8 11.5 1 15 885 899 885 910 0.89

12 12 5.4e-05 0.44 10.5 14.4 3 19 918 936 917 936 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2	1.6e+04	-4.3	1.6	15	19	462	466	461	466	0.81
2	12	0.016	1.3e+02	2.6	0.3	4	10	495	501	494	502	0.97
3	12	2.5e-07	0.0021	17.9	13.9	4	18	514	528	512	529	0.94
4	12	9.6e-09	7.9e-05	22.5	10.9	1	18	565	582	565	583	0.97
5	12	4.2e-10	3.4e-06	26.8	13.9	1	19	623	641	623	641	0.98
6	12	0.00051	4.2	7.4	13.2	4	18	692	706	685	707	0.85
7	12	1.5	1.3e+04	-3.7	2.0	5	10	736	741	736	741	0.93
8	12	1.5	1.2e+04	-3.7	12.4	1	18	747	768	747	769	0.83
9	12	8.7e-10	7.2e-06	25.8	13.8	1	19	774	792	774	792	0.98
10	12	2	1.6e+04	-15.8	20.6	9	19	838	849	821	849	0.73
11	12	2.2e-05	0.18	11.8	11.5	1	15	885	899	885	910	0.89
12	12	5.4e-05	0.44	10.5	14.4	3	19	918	936	917	936	0.94

Sequence Information

Coding Sequence: ATGGCGAGTGGATCGAACAATTTCATGAGAAATAATGAAGGAGCGTCCAGCTTTTCTGATTTGGCTGCTAACTCCTCTTTGACAGCTACTGCTACAGAATTTGTACCAAATTCAGCTAATAAGAGCAAGTTCTTCAAGAAATCCAAGAATCCTAGAAGTTTTGCCCAGGGTTACAGGAGTCATCCCAGAGAAAATGTAGGAGAGCAATCTTACAGTTCCTCAGGATTTTCTGAACAGACTCTAGACAGACATTCTACTAGTGGAAAGTATCAAAACCGCTATGGTAATGTTTCCGGTTCCGAAGGGAATGACTTTCCTGCAGGTAATATTCCGGTTAGATCAAATGATGTTTCCAACGGTGGATCCTCTTCTAAGACATCGTCAAAATCATCCAGtgcaacaaaatatttcaatggCTATAGAGGGTACAACAAAAGCCGAAAAGATAGTCCTGGTCAAGCttctgcaaacaatttttctgaaGGTGGTGAATTTGAAGAAGCTGTTGGAGGCAAAAGTTTGAAACCCTATTATAATAAAGATAATGGTCCTGGTTATGTCAAACCAAGAGACCGTAATGGGAATAGGGACCAAGTTGCTGACCAACATTCAGATCAACCACCTTATGGTGATCGATCTAAATTCAGAGAAAGCAGAGATCAGGTACCTATGCGGTCTCAGAAAAGAGATGAGCCTAATAGAGGTAAAGATCGTTCTAGATTTTGGGAACGTAACAATCATGCGGACAGAGAAACAGGCGATGATTCAAGGTCTTTTGATAGATACTCTAGTCATCATTCTGAGAGAGGTCAAGACCATTACCAGGATCGATATTATTCAAACCGGCCCAACAGGCGATACTCTGATCGCAATCAAGAGCGACAGTCAGATGACCGTAACAGAAATCATAGCTATGAGCAAGACTTAAGGTCTCAGGGTTATAGCTCAAGAGGCAGATTCCAATATGATTTTATGAAGGAAGATCAAAATCGACAGCGAAATAATGTTCACTCCAAAGGAAGAAACTTAACACACAATTTCAATACTCAAGAAACTTTTAATTATGATAACTCCAAGCAATTCTCAAATGAGAGTAGCTATATGGAGAGAGAGGTATCCAGTTCAAGTCGGAGAGAGAATGACTTCAGCTCCTATTCTCGGCAGAATACTCAGAGGAAGTTTAGCTATCGAGATGGAGACGATGTTTCGCAAAGAGAACGTTTAACAGAACAGCTGACTCGTGGTGTTTTGGAATGTCTTGTCTGTTGTGATAGAGTGAGACAACATGATGCTGTGTGGAGTTGCTCCAATTGTTTCCATGTTTTGCATTTGAGATGTGTCACAAAATGGGCTAAGTCATCCAAGGCTGAGACAGGTTGGCGCTGCCCAGCTTGTCAAAATGTGACGGAAACTCTCCCATCTCAGTATAGGTGCTTTTGCAACAAAGTTGTGGATCCTTCATGGAATCGGCATGACACCCCACACACTTGTGGGGAGGTGTGTGGAAAATCGCGGGAGGGCCAACGGCCACAATGTGTCCACAAGTGTACTTTGTTGTGCCATCCAGGTCCTTGTCCACCCTGTGTTGCTCAAGTTACAAGGAATTGTGGTTGTGGCAAAACATCTCAAACAGTTAAGTGTGCTTTAGAAAAGCCCTTACTTTGTGAAGCAATTTGTAATAAGATTCTGAACTGTGGTGTCCATTATTGTGAGAAAAGTTGCCATGCTGGAGCATGTGAGCCATGTGAACTCAAAATTGAACAAGTGTGTTTCTGTAAGAAACAAAGGAGAGAAGTTGATTGTATACCTGAAAACCAAGGTGTTCTGGAGTTCAGTTGTAATGGAATCTGTGAACAGTTTTTGGCCTGTGGAAATCACAAATGTGATGATGTGTGCCATGAAGGTGAATGCAAACCATGCCAGTTCACTCCTGACCTTATCACTCATTGCCCTTGTGGAAAAACTGAATTAAGTTCAAAACCTGATGATTTGAGAAGAAATTGTCTGGATCCTATTCCAACCTGTGGGAAAATTTGTAGTAGGAGACTTTCTTGTGGTCAACCGAGCAACCCTCATACTTGTAAATCTAGTTGCCATTCTGACGGGTGTCCTCCATGTTTGCTTACGACTATGGTTCGGTGTCGATGTGGACACATGGACAGAGAATTGCCTTGTGATCAACTTACCTCAAAAGCTGATGATGCCAGATGTGAGAAGAAATGTACGAAGAAGCGCAGCTGTGCTAAACACAAATGTAACCAGCAGTGTTGCATTGAAATAGATCACCCTTGTCCGCTTCCCTGTAATCACACTCTGAGCTGTGGACTTCATCGTTGTGAACAGCTTTGCCATCGAGGGCATTGTCAACCATGCTGGAGAACCAGCTTTGAAGAATTGTTTTGTGAATGCGGTGTTGAAGTTTTGTACCCACCTGTGCCTTGTGGCACAAAGCCCCCACCATGCTCTCGTCCCTGCTCTCGTCAGCATGACTGTGAGCATCCAGCCCTTCATCCGTGTCACAGTGACACCCACTGCCCTCCCTGTACAGTTCTTACCCAGAAATATTGTTATGGAAATCATGAGTTAAGGAAAAGTATTCCTTGCCATCAGAAAGAATTTTCTTGTGGTCTACCATGTAACAAAGAGTTGCCCTGTGGGCGCCATAAGTGCATTCAATTGTGTCACAAGGAAGAATGTTTGCGTCTTGGAGCAGTGTGCACTCAACCGTGTATTTCACCACGACCCACTTGCCAACATCCTTGCTCTGCACCCTGTCATGAAGGCAGTTGTCCAGATGTGCCATGCAAAGAAACGGTTAGAGTAACTTGTGAATGTGGGCATCGCTCAGCCATGAGGCCGTGTtctgaaaacacaaaagaatATCAACGCATTGCTACTTCACTGCTAGCCTCTAAAATGGCAGATGTTCAGCTAGGCCATAGTATAGATATCGGAGACATTATGGGTAATGCCAGTACCAAAAAATTATACTTAAAATCGCTTGAGTGCAATGATGAATGCAAGGCCATTGAAAGGAATCGCAGAATGGCCATAGGTCTTCAAATTCGAAATCCTGATATAAGTCAGAAACTAACTCCTCGTTACTCAGACTTCATGCGAGGCATGGCCAAAAAAGATCCCTTATTTTGTCAAAATGCTCATGAGAAGCTGACTGAACTAGTAAAATTAGCCAAGGAGTCCAAGCAGAAAAGTCGAAGCTATTCATTTGAAGTTATGAATAGAGAGAAGCGCCAGTTTCTTCATGAGTACTGTGAGCATTTTGGATGTGAATCAGTTGCTTATGATCAAGAGCCTAAACGTAATGTAGTTGCAACTGCACAAAAAGCCAAGGCATGGCTCCCAAGCGTAGGGTTGTTGGAACTTGTGCAAAGAGAAGCAGGTCAGCGTAAAGTACCTGGACCGATGCTGAACTCTGTTAAGAAACCTATCAATAGAAATATGGACACGTTGTCTAGCAAGTGGGCAACCAAACCGACTACTGATGGATCCTCTAGCTCCAATGTACCACAAACTCTAGTTTCAACTGGCGCTGCTTACAAAACTGCCACCTATCCAAGTTCACATGGTGATGAGTCTGCCTCTGGAAGTAGTAGTGGTGTTTCTTTTATTGATCACTTCAATTCATAA
Protein Sequence: MASGSNNFMRNNEGASSFSDLAANSSLTATATEFVPNSANKSKFFKKSKNPRSFAQGYRSHPRENVGEQSYSSSGFSEQTLDRHSTSGKYQNRYGNVSGSEGNDFPAGNIPVRSNDVSNGGSSSKTSSKSSSATKYFNGYRGYNKSRKDSPGQASANNFSEGGEFEEAVGGKSLKPYYNKDNGPGYVKPRDRNGNRDQVADQHSDQPPYGDRSKFRESRDQVPMRSQKRDEPNRGKDRSRFWERNNHADRETGDDSRSFDRYSSHHSERGQDHYQDRYYSNRPNRRYSDRNQERQSDDRNRNHSYEQDLRSQGYSSRGRFQYDFMKEDQNRQRNNVHSKGRNLTHNFNTQETFNYDNSKQFSNESSYMEREVSSSSRRENDFSSYSRQNTQRKFSYRDGDDVSQRERLTEQLTRGVLECLVCCDRVRQHDAVWSCSNCFHVLHLRCVTKWAKSSKAETGWRCPACQNVTETLPSQYRCFCNKVVDPSWNRHDTPHTCGEVCGKSREGQRPQCVHKCTLLCHPGPCPPCVAQVTRNCGCGKTSQTVKCALEKPLLCEAICNKILNCGVHYCEKSCHAGACEPCELKIEQVCFCKKQRREVDCIPENQGVLEFSCNGICEQFLACGNHKCDDVCHEGECKPCQFTPDLITHCPCGKTELSSKPDDLRRNCLDPIPTCGKICSRRLSCGQPSNPHTCKSSCHSDGCPPCLLTTMVRCRCGHMDRELPCDQLTSKADDARCEKKCTKKRSCAKHKCNQQCCIEIDHPCPLPCNHTLSCGLHRCEQLCHRGHCQPCWRTSFEELFCECGVEVLYPPVPCGTKPPPCSRPCSRQHDCEHPALHPCHSDTHCPPCTVLTQKYCYGNHELRKSIPCHQKEFSCGLPCNKELPCGRHKCIQLCHKEECLRLGAVCTQPCISPRPTCQHPCSAPCHEGSCPDVPCKETVRVTCECGHRSAMRPCSENTKEYQRIATSLLASKMADVQLGHSIDIGDIMGNASTKKLYLKSLECNDECKAIERNRRMAIGLQIRNPDISQKLTPRYSDFMRGMAKKDPLFCQNAHEKLTELVKLAKESKQKSRSYSFEVMNREKRQFLHEYCEHFGCESVAYDQEPKRNVVATAQKAKAWLPSVGLLELVQREAGQRKVPGPMLNSVKKPINRNMDTLSSKWATKPTTDGSSSSNVPQTLVSTGAAYKTATYPSSHGDESASGSSSGVSFIDHFNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732370;
90% Identity: -
80% Identity: -