Basic Information

Insect: Frankliniella fusca
Gene Symbol: stc
Assembly: GCA_029379305.1
Location: JAHWGI010001440.1:421518-426264[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3 3.1e+04 -4.3 1.6 15 19 455 459 454 459 0.81

2 13 0.024 2.5e+02 2.6 0.3 4 10 488 494 487 495 0.97

3 13 3.7e-07 0.0039 18.0 13.9 4 18 507 521 505 522 0.94

4 13 3 3.1e+04 -4.3 1.2 6 10 548 552 548 552 0.96

5 13 3.4e-08 0.00035 21.3 12.6 1 19 558 576 558 576 0.98

6 13 2.5e-09 2.6e-05 24.9 15.4 1 19 616 634 616 634 0.98

7 13 2e-06 0.021 15.6 12.4 4 18 685 699 678 700 0.85

8 13 2.3 2.4e+04 -3.7 2.0 5 10 729 734 729 734 0.93

9 13 2.2 2.3e+04 -3.7 12.4 1 18 740 761 740 762 0.83

10 13 1.3e-09 1.4e-05 25.8 13.8 1 19 767 785 767 785 0.98

11 13 3 3.1e+04 -10.6 17.3 8 19 830 842 814 842 0.74

12 13 8.3e-06 0.087 13.7 9.9 1 16 878 893 878 904 0.86

13 13 8e-05 0.84 10.5 14.4 3 19 911 929 910 929 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3	3.1e+04	-4.3	1.6	15	19	455	459	454	459	0.81
2	13	0.024	2.5e+02	2.6	0.3	4	10	488	494	487	495	0.97
3	13	3.7e-07	0.0039	18.0	13.9	4	18	507	521	505	522	0.94
4	13	3	3.1e+04	-4.3	1.2	6	10	548	552	548	552	0.96
5	13	3.4e-08	0.00035	21.3	12.6	1	19	558	576	558	576	0.98
6	13	2.5e-09	2.6e-05	24.9	15.4	1	19	616	634	616	634	0.98
7	13	2e-06	0.021	15.6	12.4	4	18	685	699	678	700	0.85
8	13	2.3	2.4e+04	-3.7	2.0	5	10	729	734	729	734	0.93
9	13	2.2	2.3e+04	-3.7	12.4	1	18	740	761	740	762	0.83
10	13	1.3e-09	1.4e-05	25.8	13.8	1	19	767	785	767	785	0.98
11	13	3	3.1e+04	-10.6	17.3	8	19	830	842	814	842	0.74
12	13	8.3e-06	0.087	13.7	9.9	1	16	878	893	878	904	0.86
13	13	8e-05	0.84	10.5	14.4	3	19	911	929	910	929	0.94

Sequence Information

Coding Sequence: atggcgAGTGGATCGAATAATTTTGTTCGAAATAATGAAGCAACATCGAACTACAATGAATTGGCTGCAAACTCGTCTTTGACACCTACTGCCACTGAGTTTGTACCCAATTCTGCTAATAAGAGCAAGTTCCTGAAAAAACCTAAGAACTCCAAGTCATTTACCCAAGGTTATAGGAGTTATCCTAGAGAACATACAAGAGAACAAACCTATCCTGTCTCAGGATTTTCGGAACCAGCTGCAGAGAGATACAACAGTAGTGGAAAAAATCGAAACGCTAATGTTTCAGGTTCCGAAGGGAATGACTTTGCTCCGGTTGATGTACCTGATAGATCCACTAATGTTTCAAATGGCGGATCATCCAGAATGTTTGCTAAGTCATCAGGCTCATCAAAATACAATAATGGCTATAGAGGCTACAATAAGGGCCGAAAAGAGTTGGGACAGAGTTCTCTTAATCATTTTCCTGACAGTGGTGAATTAGAAGAAGCTGTTGGAGGCAATAATGCAAAACCATATTTCATGAGAGATAATGTCTCAGGATATAGTAAATCCAGAGACCGAAATGGAAACAGAGACCAGGCTGCTGATCAGTGTTCAGATCAACAGTTTTACAATGACCGTTCCAAGTTTCGGGAAGGAAGAGATCAGGGCCCCACGAGGATACAGAAAAGGGATGACTCCAATAGAGGTAAAGACCGCTCTAGATTTTGGGACCGTAACAATTATATGGATAGGGAAGCAGGTGATGATTCCAGATCTTCTGATCGATATCCTGCACATTATTCTGAGAGGGCTCAGGACCACTACCAAGATCGGTATCGATCTAACAGACGATATACTGATCGCAATCAAGATCGACCATCAGATGACCGTAATAGAAACCAGAGCTATGATCACGAATCTAGATCTTATAGCTATGGTTCAAGAGGAAGATTCCAGTATGATTTCATGAAGGAAGATCAAAATAGGCCACGGAACACTTCTTATTCCAAAGGAAAAAACACTATGCACAATTTCAACACTCAAGAGACATTTAATTCTGATAACTCCAAGCAACTCTCAAGTGAGAATCCCTTCATGGAGAGGGAAATTTCAAACTCAAGTCGTAGAGAGAGTGAATACAATTCTTATTCTCGACAGAGTTCTCAGAAAAAGTTCAATTATCGAGATGGAGATGACGTTTCTCAAAGAGAACGTTTAACAGAACAGTTGACACGTGGGGTTTTAGAATGTCTTGTTTGCTGTGATAGAGTGAGACAGCACGACGCAGTATGGAGCTGCTCAAATTGTTTCCACGTTTTGCATTTGAGATGTGTAACTAAATGGGCTAAATCATCTAAAGCTGAGAGTGGATGGCGGTGTCCAGCTTGTCAAAATGTGACCGAAACACTTCCTTCACAGTATAGGTGCTTCTGCAGCAAAGTTGTAGATCCTCAATGGAATCGCCATGACACACCACATACATGTGGGGAGGTGTGTGGGAAATCAAGGGAAGGTCAAAGGCCACAATGTGTCCACAAATGTACTTTACTCTGCCACCCAGGTCCATGCCCTCCTTGTGTGGCCCAGGTTATGAGGAATTGTGGCTGTGGTAAAACATCTCAAACTGTAAAATGTGCTTTAGAAAAGCCATTGCTTTGTGAAGCTGTTTGTAGGAAGGTTCTTAACTGTGGTGTTCATTTGTGTGAAAAAACTTGTCATTCTGGTTCATGTGAGCCATGTTCTCTGAAAGTCAAACAAGtTTGCTTCTGCAAAAAAGAAAGTAGAGAAGTTGATTGCCTAGCTGAAAACCAAGGTATTCTACAATTCAGCTGCAATGGAATCTGTGAACATGATTTAGCTTGTGGCAACCACAAATGCAATGACAAGTGTCATGAAGGAAACTGCAAACCTTGCCAGTTAACCCCTGCTGTCATCACGCATTGCCCTTGCGGTAAAACAGAATTGAGTACAAATATTGAGGAGTTGAGAAAAAGTTGTTTGGATCCTATCCCGACCTGTGGAAAAATTTGCTCTAAAAGACTTCCTTGTGGACAACCAAGCAATCCTCACACTTGTAAATCAAGTTGCCATGCTGGTATGTGCCCTCCATGCTTGCTTACAACTATGGTGCGTTGTCGATGTGGGCATATGGATAGAGAGTTGCCTTGTGAACAACTTACCTCAAAAGCTGATGATGCCAGAtgtgaaaaaaaatgtacaaagaaACGCAGCTGTGCCAAACACAAATGTAATCAGCAGTGTTGTATAGAAATAGATCATCCATGTCCTCTCCCCTGTAACCATACGCTGAGCTGTGGACTTCATCGCTGTGAGCAGCTTTGCCACCGAGGACATTGTCAACCTTGCTGGAGAACCAGCTTTGAGGAATTATTTTGTGAATGCGGGGCTGAAGTTTTGTACCCACCTGTTCCGTGTGGAACAAAGCCACCACCTTGTTCTCGCCCTTGTTCTCGTCAACATGATTGTGAGCATCCAGCGCTCCATCCATGTCATAGTGACACGAACTGCCCTCCCTGCACGGTACTAACCCAGAAGTATTGTTATGGAAATCATGAGTTGCGAAAAAGCATTCCTTGCCACCAAAAAGAGTTTTCATGTGGCTTACCTTGTAACAAAGAATTGCCCTGCGGACGTCATAAATGTATTCAACTGTGTCACAAGGAAGAATGTCTGCGACCTGGAGCAGTTTGCACTCAGCCATGTACTGTTCCTCGACCCACCTGTCAGCATCCGTGCTCTGCACCCTGTCATGAAGGAAGTTGTCCAGATGTGCCATGCAAAGAAACGGTGAGAGTAACTTGTGAATGCGGGCACCGCTCAGCCATGAGGCCATGCTCTGAAAACACCAAAGAATATCAGCGAATCGCTACATCACTCCTAGCCTCCAAAATGGCTGATGTTCAACTAGGGCATAGCATAGATATTGGTGATATCATGGGCAATGCCAGTACAAAGAAATTGTATCTGAAATCTCTTGAGTGTAATGATGAATGTAAGGCGATTGAAAGGAATCGTAAAATGGCTATTGGTCTCCAAATTCGTAACCCTGATATTAGTCAGAAACTCACTCCCCGGTACTCAGACTTCATGAGGGGCTGGGCTAAAAAAGACCCTTTATTTTGCCAACATATTCATGACAAACTAACGGAGCTTGTCAAATTAGCCAAGGAGTCAAAGCAAAGAAGTCGAAGCCATTCATTTGAAGTCATGAACAGAGAAAAGCGTCAGTTTGTTCACGAATATTGTGAGCATTTTGGATGTGAATCTATTGCTTATGATCAGGAACCCAAAAGAAATGTGGTAGCAACAGCTCAAAAAATAAAGGCATGGCTGCCGAGTGTTGGGCTTTTGGAACTTGTGCAGAGAGAAGCGGGTCAACGCAAAGTACCTGGACCAATGCTGAACTCAGTGAAGAAACCTTCCAATAGAAATATGGATACTTTGTCTAGTAAGTGGGCAACCAAATCAACTGCTGACAGACCTTCTAGTGCCAGTCTAAATCAAGCTTTTGCTCCAACTAGCAATGTTTCAAACAATTCGACATATCCAAGTTTACAGGGTGATGAGCCTGTCTCTGGAAGTAGCAGTGGCATTTCGTTCATTGACCATTTTAATTCTTAA
Protein Sequence: MASGSNNFVRNNEATSNYNELAANSSLTPTATEFVPNSANKSKFLKKPKNSKSFTQGYRSYPREHTREQTYPVSGFSEPAAERYNSSGKNRNANVSGSEGNDFAPVDVPDRSTNVSNGGSSRMFAKSSGSSKYNNGYRGYNKGRKELGQSSLNHFPDSGELEEAVGGNNAKPYFMRDNVSGYSKSRDRNGNRDQAADQCSDQQFYNDRSKFREGRDQGPTRIQKRDDSNRGKDRSRFWDRNNYMDREAGDDSRSSDRYPAHYSERAQDHYQDRYRSNRRYTDRNQDRPSDDRNRNQSYDHESRSYSYGSRGRFQYDFMKEDQNRPRNTSYSKGKNTMHNFNTQETFNSDNSKQLSSENPFMEREISNSSRRESEYNSYSRQSSQKKFNYRDGDDVSQRERLTEQLTRGVLECLVCCDRVRQHDAVWSCSNCFHVLHLRCVTKWAKSSKAESGWRCPACQNVTETLPSQYRCFCSKVVDPQWNRHDTPHTCGEVCGKSREGQRPQCVHKCTLLCHPGPCPPCVAQVMRNCGCGKTSQTVKCALEKPLLCEAVCRKVLNCGVHLCEKTCHSGSCEPCSLKVKQVCFCKKESREVDCLAENQGILQFSCNGICEHDLACGNHKCNDKCHEGNCKPCQLTPAVITHCPCGKTELSTNIEELRKSCLDPIPTCGKICSKRLPCGQPSNPHTCKSSCHAGMCPPCLLTTMVRCRCGHMDRELPCEQLTSKADDARCEKKCTKKRSCAKHKCNQQCCIEIDHPCPLPCNHTLSCGLHRCEQLCHRGHCQPCWRTSFEELFCECGAEVLYPPVPCGTKPPPCSRPCSRQHDCEHPALHPCHSDTNCPPCTVLTQKYCYGNHELRKSIPCHQKEFSCGLPCNKELPCGRHKCIQLCHKEECLRPGAVCTQPCTVPRPTCQHPCSAPCHEGSCPDVPCKETVRVTCECGHRSAMRPCSENTKEYQRIATSLLASKMADVQLGHSIDIGDIMGNASTKKLYLKSLECNDECKAIERNRKMAIGLQIRNPDISQKLTPRYSDFMRGWAKKDPLFCQHIHDKLTELVKLAKESKQRSRSHSFEVMNREKRQFVHEYCEHFGCESIAYDQEPKRNVVATAQKIKAWLPSVGLLELVQREAGQRKVPGPMLNSVKKPSNRNMDTLSSKWATKSTADRPSSASLNQAFAPTSNVSNNSTYPSLQGDEPVSGSSSGISFIDHFNS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733684;
90% Identity: -
80% Identity: -