Focc008564.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- Sall4
- Assembly
- None
- Location
- ML763012.1:1940772-1942896[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.21 1.8e+02 2.3 0.1 26 43 72 89 66 94 0.86 2 5 0.047 39 4.4 0.0 21 52 95 126 89 128 0.88 3 5 0.0012 0.97 9.5 0.6 23 49 125 150 121 153 0.88 4 5 0.0047 3.8 7.6 0.5 22 44 202 224 199 238 0.90 5 5 1.3e-05 0.011 15.7 0.9 17 48 254 284 246 289 0.87
Sequence Information
- Coding Sequence
- TTGCGTGCTCTGCTTCAGGTGGCCGGTGGCTCCCAATCCCAACCCCAACCCAAGTCCCCGCCCCAGTCCCAACTCATCACCAAATTCTCCAACGTCATACGAACGTCACTGACGGAGAACAGCGGAGACGGTCGGGGGAGCGTACAGCTGCCCGAGTCCGGGCGGTACGTTCTGGACGAGGAGTCGCAGCGTCTGGTGCGCATCGAGGACAACCAGTGCGACATCTGCTTCCGGGTGCTCTCGACCAAGAACTCGCTCAAGATGCACTACCGCAGCCACACGGGCGAGCGGCCCTACAAGTGCGGCGAGTGCGAGATGGCCTTCACCAAGAGGGGCGACCTGGGCCGCCACCTGCTGATCCACGCCAACGCCAAGCCCTTCCCCTGCCTCATTTGCGGCGTGTCCTTCCGCCAGAGCGCGCACCTCAAGCAGCACACCAAGCGCCACTTCCCGCGAATTAAACGTGTTTTCTGTCGCCACTCTCCGCGTGTCCTTAGCAACCCCTCCGCGaagcccacccacccacgccacgcccacacaCGACTCTTCGCCGCCCAGGAGGCCACTCTAACGGCTGCCTTGTCTgtgctggagctggacccGGAGgagccgctgcgctgcgtcgTGTGCCGCGCGCTCTTCTCGACGCCCAGCAACCTGAAGCGCCACCAGCTGACGCACACGCGCGAGCGGCCCTACAAGTGCGGCGAGTGCGGCGTGGGCTTCTCGCGCACCGACTACCTCAGCCGGCACGCGCTCTCGCACTCGCAGCGGAAGCCGCTCGCCTGTCCGGACTGCGGCCAGAGCTTCCGCCAGAGCTCGCACCTCAAACGCCACGCGCGCAAGCGCCACGGCcaaggccacggcggcggcgcgcgcccccgcgagtAG
- Protein Sequence
- LRALLQVAGGSQSQPQPKSPPQSQLITKFSNVIRTSLTENSGDGRGSVQLPESGRYVLDEESQRLVRIEDNQCDICFRVLSTKNSLKMHYRSHTGERPYKCGECEMAFTKRGDLGRHLLIHANAKPFPCLICGVSFRQSAHLKQHTKRHFPRIKRVFCRHSPRVLSNPSAKPTHPRHAHTRLFAAQEATLTAALSVLELDPEEPLRCVVCRALFSTPSNLKRHQLTHTRERPYKCGECGVGFSRTDYLSRHALSHSQRKPLACPDCGQSFRQSSHLKRHARKRHGQGHGGGARPRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733425;
- 90% Identity
- iTF_00733425;
- 80% Identity
- iTF_00733425;