Focc008594.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763012.1:807235-817780[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.19 1.5e+02 2.4 0.1 27 45 135 153 133 156 0.89 2 12 0.0046 3.8 7.6 0.0 21 46 157 182 153 188 0.86 3 12 0.0055 4.5 7.3 0.0 21 46 185 210 181 216 0.86 4 12 0.0078 6.4 6.9 0.2 21 46 213 238 209 244 0.86 5 12 0.027 22 5.1 0.0 21 45 241 265 237 268 0.90 6 12 0.004 3.2 7.8 0.0 21 45 269 293 265 296 0.91 7 12 0.0015 1.2 9.2 0.0 21 47 297 323 293 329 0.86 8 12 0.12 1e+02 3.0 0.0 21 46 325 350 321 356 0.86 9 12 0.015 12 6.0 0.0 21 52 353 384 349 384 0.88 10 12 0.0011 0.92 9.6 0.1 20 47 380 407 377 413 0.86 11 12 0.32 2.6e+02 1.7 0.1 21 47 409 435 405 440 0.82 12 12 0.2 1.7e+02 2.3 0.2 18 43 434 459 418 463 0.77
Sequence Information
- Coding Sequence
- ATGTCCACTTCCGGTCCGGTCAGTGTTATTTCAACCGTGTCAAAGTGTCAATGTCAACTACACCTGTCAGCGTGTCCTGTAACTTTCCattttgtaacttttatttCATCTTTTAACAAAATTACTACCTGTTCTTCGAAGATTGATGAATTAACTTCGCCTGAAGTAAGGCAGCTGCTGCTATTCAATGATCTGGTTGCTGGTGGTCAGGCAAACGCTTCTGAGAGTCACTTTCTTCTGGTGGTGTTGCTACGGCTGATACAAGTTGTACTGAACGTCTTGGGGTGCGTTGGCTCATTTTGTACAATGCCCTATCAATGTGGTGTTTGCTCGAAAGAGATTTCTACTCAAGCCAGACACGTAGCTCACATGAAAGTGCACGCTAGAGGTGTGCTTTTTGATTGCACTCTCTGCCTCAAGAAATTTTCAAGCAGTCCTTCTCTGCGACGTCATCTCCGAACGCATACGGGAGAAACGCCTGATGAGTGTAGCGTGTGCAACAAAAAGTTTGCGCAAAGTGGGGGTTTGCgtgctcatctccgaacgcatactggagaaaagccttttgagtgtacagtgtgcaacatGAAATTCTCGGAAAGTAAAACTTTGCGTGatcatcttcgaacgcacacaggcGAAAAGCCATTTGATTGTAGTGCGTGTTGCAAGAAGTTTGCGCAAAGTTCGCATTTGCGagctcatctccgaacgcacacaggagaaaagccatttgagtgtagcgagtgcaacaagaagtttgcgCAAAGTGGGGATTTGCgtgctcatctccgaactcacacaggagaaaagccctaTGAGTGttcagtgtgcaacaagaaattttcgacaAGTGGGAATTTGCgtgctcatctccgaacgcacacaggcgagaagccctttgagtgtacagtgtgcaacatGAAATTTGCGCAAAGTGGTAGTTTGCGTGCTCATCTCCAAACGCACACAGGCGAAAAACCATTTGATTGTAGTGCGTGTTCCAAGAAGTTTGCGCGAAGTGGGCATTTGCgtgctcatctccgaactcacacaggagaaaagccctaTGAGTGttcagtgtgcaacaagaaattttcgacaAGTGGGGATTTGCGTGtgcatctccgaacgcacaaatgcgagaagccctttgagtgcacagtgtgcaACATGAAATTTACGCAAAGTGGTAGTTTGCgtgctcatctccgaacgcacacacgAGAAAAGCCTTACGAGTGTAGTGTGTGTAACAAGAAGTTTGCACATAGTTCCGGACTGAAATACCATGTTCAAACGCACACAgcagagaagccctttgagtgcactgtgtgccacaagacgttttcaCATCGTCAACTTTTGCGTAGTCATGCCAAAACACACAAGACCTAG
- Protein Sequence
- MSTSGPVSVISTVSKCQCQLHLSACPVTFHFVTFISSFNKITTCSSKIDELTSPEVRQLLLFNDLVAGGQANASESHFLLVVLLRLIQVVLNVLGCVGSFCTMPYQCGVCSKEISTQARHVAHMKVHARGVLFDCTLCLKKFSSSPSLRRHLRTHTGETPDECSVCNKKFAQSGGLRAHLRTHTGEKPFECTVCNMKFSESKTLRDHLRTHTGEKPFDCSACCKKFAQSSHLRAHLRTHTGEKPFECSECNKKFAQSGDLRAHLRTHTGEKPYECSVCNKKFSTSGNLRAHLRTHTGEKPFECTVCNMKFAQSGSLRAHLQTHTGEKPFDCSACSKKFARSGHLRAHLRTHTGEKPYECSVCNKKFSTSGDLRVHLRTHKCEKPFECTVCNMKFTQSGSLRAHLRTHTREKPYECSVCNKKFAHSSGLKYHVQTHTAEKPFECTVCHKTFSHRQLLRSHAKTHKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733346;
- 90% Identity
- iTF_00733346;
- 80% Identity
- iTF_00733346;