Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763411.1:125518-136856[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 3e-06 0.00016 21.8 1.2 1 23 245 267 245 267 0.98

2 27 0.00022 0.012 15.9 1.9 1 23 296 319 296 319 0.96

3 27 0.0011 0.057 13.8 1.5 2 23 326 348 325 348 0.96

4 27 0.067 3.6 8.1 0.1 2 23 424 445 423 445 0.96

5 27 0.029 1.6 9.2 1.9 2 23 468 490 467 490 0.95

6 27 0.075 4.1 7.9 1.3 1 23 537 560 537 560 0.93

7 27 0.12 6.8 7.3 0.8 3 23 568 589 566 589 0.96

8 27 0.051 2.8 8.5 0.2 1 23 691 714 691 714 0.94

9 27 1.7 92 3.7 0.8 1 22 733 754 733 756 0.85

10 27 0.035 1.9 9.0 0.5 2 23 763 786 762 786 0.92

11 27 0.15 8.1 7.0 0.1 2 23 795 817 795 817 0.94

12 27 0.24 13 6.4 0.0 1 23 823 846 823 846 0.97

13 27 4.9e-05 0.0026 18.0 2.8 1 23 854 876 854 876 0.98

14 27 0.015 0.82 10.1 0.5 3 23 924 946 922 946 0.93

15 27 0.00061 0.033 14.5 1.9 2 23 950 972 949 972 0.96

16 27 0.0024 0.13 12.7 3.3 2 23 979 1001 978 1001 0.95

17 27 0.011 0.58 10.6 1.7 3 21 1034 1052 1033 1053 0.94

18 27 0.043 2.3 8.7 5.4 2 23 1077 1099 1077 1099 0.94

19 27 0.049 2.7 8.5 2.3 2 23 1164 1186 1164 1186 0.96

20 27 0.14 7.5 7.1 2.2 2 23 1224 1246 1224 1246 0.96

21 27 0.67 36 5.0 0.2 3 23 1253 1274 1252 1274 0.91

22 27 1.6e-05 0.0009 19.5 1.6 1 23 1399 1422 1399 1422 0.97

23 27 0.14 7.6 7.1 0.2 2 13 1430 1441 1429 1450 0.83

24 27 0.89 48 4.6 1.1 2 23 1553 1575 1552 1575 0.93

25 27 8.9 4.8e+02 1.4 1.5 1 23 1586 1608 1586 1608 0.84

26 27 0.031 1.7 9.2 0.4 1 21 1669 1689 1669 1694 0.93

27 27 0.71 38 4.9 2.1 1 21 1710 1731 1710 1732 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	3e-06	0.00016	21.8	1.2	1	23	245	267	245	267	0.98
2	27	0.00022	0.012	15.9	1.9	1	23	296	319	296	319	0.96
3	27	0.0011	0.057	13.8	1.5	2	23	326	348	325	348	0.96
4	27	0.067	3.6	8.1	0.1	2	23	424	445	423	445	0.96
5	27	0.029	1.6	9.2	1.9	2	23	468	490	467	490	0.95
6	27	0.075	4.1	7.9	1.3	1	23	537	560	537	560	0.93
7	27	0.12	6.8	7.3	0.8	3	23	568	589	566	589	0.96
8	27	0.051	2.8	8.5	0.2	1	23	691	714	691	714	0.94
9	27	1.7	92	3.7	0.8	1	22	733	754	733	756	0.85
10	27	0.035	1.9	9.0	0.5	2	23	763	786	762	786	0.92
11	27	0.15	8.1	7.0	0.1	2	23	795	817	795	817	0.94
12	27	0.24	13	6.4	0.0	1	23	823	846	823	846	0.97
13	27	4.9e-05	0.0026	18.0	2.8	1	23	854	876	854	876	0.98
14	27	0.015	0.82	10.1	0.5	3	23	924	946	922	946	0.93
15	27	0.00061	0.033	14.5	1.9	2	23	950	972	949	972	0.96
16	27	0.0024	0.13	12.7	3.3	2	23	979	1001	978	1001	0.95
17	27	0.011	0.58	10.6	1.7	3	21	1034	1052	1033	1053	0.94
18	27	0.043	2.3	8.7	5.4	2	23	1077	1099	1077	1099	0.94
19	27	0.049	2.7	8.5	2.3	2	23	1164	1186	1164	1186	0.96
20	27	0.14	7.5	7.1	2.2	2	23	1224	1246	1224	1246	0.96
21	27	0.67	36	5.0	0.2	3	23	1253	1274	1252	1274	0.91
22	27	1.6e-05	0.0009	19.5	1.6	1	23	1399	1422	1399	1422	0.97
23	27	0.14	7.6	7.1	0.2	2	13	1430	1441	1429	1450	0.83
24	27	0.89	48	4.6	1.1	2	23	1553	1575	1552	1575	0.93
25	27	8.9	4.8e+02	1.4	1.5	1	23	1586	1608	1586	1608	0.84
26	27	0.031	1.7	9.2	0.4	1	21	1669	1689	1669	1694	0.93
27	27	0.71	38	4.9	2.1	1	21	1710	1731	1710	1732	0.95

Sequence Information

Coding Sequence: ATGAGTAGAATCGATAGCCGGGCGGACAGCTTTCATAGCTTGTGCCGCCTCTGTGCGTCGTACGATGCGGTCAAACTGGAGATCTTcggggaggagggcaaggagaGGAGTCTGGTGGAGAAGATACAGACCTGCCTGCCATTCCAGATTTCTAAAAATGACCCCCTTCCTAAATCCTTATGCTACCGGTGTATgtacaatttggaaaatttctaCGACTTTCGAATGGGCTGTGTAAATGCAGTGGCTCTGCTTGAGAGCTGTCTGATAGCTGATGGTGGGAAAAATTTAGACAAGGCCTCTGCTGAAAAGAGggcaaaaataatgaaacataTGTCTAAAGCAACTTCTCGAAGTTCAGATGTTGCTATGCCACAACTTGAACCTGAGctTGATGCATTTCAGATCCCATTATCAAATTCAGTTAAAGAAGAACCAGATGACACTGACCTTCCTAAGGATGAAGATGACTCTCtccctaaaaataaaacatcaggAACTTCTGACTCAAATATGCCAAAACTTCCATCTGCTATTGAAGATGACGAGGAAGGTGGTAATACTGATGATGATATGGAGGAAATagatgaggatgaggaagatgaaAAAGTGATTGATATAGATCCTGCAGATTATCTGGAGTCTAGTGTGgCTGTCGAAATGGATGAATCATTACACTCACCTGCAAAgaaaagtaTTTCTCCTCAAAAGTCTACTGAACCTCGTGAATTATTCACTTGTCAAATTTGTGGCAAAACACTGTCCAGCAAAGGACATCTGTCCCTGCACATTAGAATTCACAGGGATGACGGCACAGATGGTAATTGTAACACCAGCTCCTCTGTGTCAACCAGCAATTCTACAGGATTGCCATTTTGTAGACCCTATAGATGTGATCTATGCAATAAAAGCTACTCCTCTTCTAAACATCTGTGGGGCCATGTTAGTTCCAATCACAGAGGAGATCCAGCTGTAACATGTCCGGAGTGTCATCGCCTGTTTTCCTCTGTAAACAATTTGGAAGAGCACAAGAGGTCAAAACATGGTGATCATACCAGTGATGCAGGTGATGAGTTGTCCAAAAAGTTAATAATTGATGAGGATTCATTTGGTAAAATGGATTCTGATGGTGACACAAACCAGAATGGAAAGAGGCCCAGAGATTTAGATGAAGCTGCAGGAAGTAGGAGAAAACGTTCAAAGCCAAGGAAAATAGCTCGTACCCATAGCTCTGAGTCTCAAGGAGATGAAGGTGATGGAGAGCCATTGGAATGTGTTTTATGCCTTGAAACATTCCCTGATGTCGCTCAGCTAATGGAACACACCAAAAAACATGAGGAAGAACATGAAGAAACACAGGCTATGGTGCAGGCACAGTCTATGATGAACTCTCAAAACCTTAGTTGTCTACTATGTGAAAAAACCTTCACTCTCAGGAATTTATTACATGATCATCTTCAAAGCCAACACGGAATAGATCCCTCAGATTTATTGGAGCATCAGAAACTATCTCAAGATGCCAGACTAGAAATGTCCATTAAAGCAGAGATAGATGAAGATCAGGATCATCATATGCTAGCTGAGAGCATGTTGGAGTCAGAAACTGTTTTCTGCTGTGAGGCATGTATACGAGAGTTCACTGATCGCTCAAGCTTGTGGTTACATATGTTGTATACTCACAAAGAGGCAGCTGCAACAGCGTGTGGACTATGTTTGAAGGTGTGTGGTGATCTACCTAGTCTCACTGCACACATTCAGACCTGTCACACAACCAGCCACCTCCTGAATGAGAAGAGAAGATACAGCTGTTCTGTTTGCATGAGACAGCACGATTCTCGCAAAAAGCTTTTATCACATGTTCTTATCCATGACATTGGGTCAGCCAAGCCTGATGACCTTATCATTCTCAACTCGGATTTGTATCAAGCTGAGAATCAAACTGAAAATGATTTTGATGAACAGGACAGCCATGATACTTCCTTCACTAACACTCCTGCTAATTTAAACATGTCTACTGCATCTTCAAACTCGGCTGtttctgcagcagctgcagttgcTGCTAACTCACCATTTGCCTGTCAGATATGTTTAAAAATCTTCCCTAATGAGGAAAAAATGGTTAAGCACAAGCAAAATGCCCACCGACAGGATGCTCTGGTTCATGCTGCGTCTGGAGTGGGTACATACCACCTCTTTTTCCGATGTGAAATTTGTGGAGTTTCACATCAAAGCAAGTCAGATAGGTGGAAGCACGTCTATGAAGTTCATAGAGGTGATCCAACTGTGACCTGCAGCCGAAATAACTGTGGTAAAGTTTTTCCTTCAGCAGAGCTTAATCAAGAGCATGTTAATCATCACAAAGTGCAGGGAACGACCCCGAACACTTGCGAGatttgtGGAAAGCTTTGGAATTCTCGTGTAGATTACTGGAAGCACATGATGGGGGTGCACGCAGAAGTTGTACCTTTTACTTGTGGCGTTTGTCTTAAAATTCTACCTGACCTGCCTCAGTTGATGGAACATGTTAAGTCATGGCATTATCCTTTGACTGGAGGCGATTATTGTTGTGACATCTGTGGAAGACCTTACTCAAACAGATCCAAGATGTCACGCCACCGCAGAATACACTTTTCTCTGCCAGGTGAAGATGATGTGGAGATCCCAGCTGAAGACGAAACTCCAACTAAATCAGGTTCCGATAAGAAAGGAGTGACTGTTAAAAGTGAGCCAGTGGACAATGCTATTAAGCCTAAAGCCACAAGTATTCATTGTGAAGGCTGTCCAAATCGTACTTTCTCTTCACGCGAAGAGTTAATTCAGCACAGACGAGCTGATCATGGAATGCTCACTTGTGATCTCTGTGACAAATTCTATGGTCGTACCTCCCACTTGTGGAAACATGTCAATAAAATGCATAGAGGACATCCTTCTGTTACTTGCACTCACTGTGGAAAATTGTCAGCTTCAAAGTCACATTTACGCAGTCATGTTCTGAAAATGCACAGGCCAGGAGTTCTTGTTGGACACATTGAAAATGTGCAATTACCCATTCCACCAGCACCTGAAAAAAAGACTGAACGGGTGCTGGGACCTCAAGCTTGCCCACAATGTTCCAAAGTCTTCTGTAATAGGTACAGGATGTTAAGGCATCTGAAGAGTTGCAGAATGTCACCAGCAATGTTCAACTCAGGCCACCAAATATTTGATGAGAAACCTAAAGGCCCAGCGACATGCCAACATTGTTCCAAGGTTTTCTCATCCAGGAAGGCAATGAGGGAACATGAACATAAATATCATATTATGTATGATTGTGAGTTGTGTGGTGAAGGAGCCATACCAAGTAAAACAGCACTGATGGACCATATCAAGATTGCTCATAGAGGATCAGAACAGTTAACATGCTCAATTGAAGGGTGTGGCGTAGTTTTGAGATGCTCTGCTGATCGTGAGAAACATGAGAAAGAGCACAGATCACAGCGTATTCCAGCAACATGTGTGAAATGTGGTGAGCTCTGTGGCAGCAAATCTCGATTGAGACAGCACATGAAGATACAACACAAGCTAAGTCCAAGCATCCTTTGTACCATTTGTGTGGCTATTCATCCCAACATTGATGATTTGCGGGCTCACGTCCAATCCGAGCATGCTGCAATAATTAACCGTGCAAATACGTGTAAAGTATGTGCTAAATCAGTAAACTCAAGGAGGCGTCTTATACATCATATCAATAATAACCATGATGGTGCTTCCCGTCTGTGCACTGTTTGCTTGGGATTCTTCGCCAATCAAGAAGAATTGGCAAAGCACACAGAAGACAAACACtcaaaggaagaggaggaggctgaaGAGGAAAGTGATTCTTCCTCTGAAGATGAAAATGGGAAAGACGACAAAAATCAAgtagatgaagatgaagaggatgaggaagatgaagaagatgacgaagaggatgatgatgaggaagGACAAGGTGACGGAGAGGATGAGGAGTCTCAAGAGTCACATTCTGAAGAGAAGTCTGTGGAAGAAAATTCAAAAGCTGATAGTGATGTTAGTGAACTTACTTTGAATGGAATTGATGACGCCAAACAACATGGAAGTTCTCTTGCATCTGATGACATTTCTTCTAGCTCAGAGAATAGTGAAAAGAGCCAAGAGAAGCAAGTTGTCTCCGAAGGGAGGCCTCGTAGATCTTACAAATGCAACATTTGCAAAGAGACATTCAAAATGCCATCCCTTCTCATGCAACATCAAAAGCAGAGACATCGCTCAGGTTCTGTTCCCATGCAGTGTCCCTCCTGTGATAAAAAGTTCTCAAACAAACTTATATTTTCAAATCATGTAAATCTTTGCAAGCGGGAGAAAAGTTCAATCTTGCAACAGACACTGGAAACTGGAAAAGGGGGTTTCAAGGACAAATCAAGCAGAGTAGTTCAACTTGCGGAAATGGCAGGCTTTAATGGACACTTCCTTGAAGGAGGTGACGATGGCAAGGACAGCAGCCCAGGTAGTTCATCTGCCCGTGCCAGAATTCAACGCAAAGTCTATGGTGAGAATGAAGGTCCTATTCACTGCTCATTGTGTAACAAAGTTTGGCCCTCATTGAGGCAGCAATGGCAGCATCTAATTCGCACTCACAGAGAAGCTGCGGCAACAACATGTGGTGTATGTCTTGAAATATGTTCAGACTACGCAACATTGAAGGTTCACCTTCATGAAATGCATCCTGACACATGGGAGGGAGAAGGTAAAAATTTTACATGCCGAATATGTGGCCGCTATCATAATGCCAGATCAAAGCTGGAACTTCATAATACCATTCATCTTGGTTTGGAGGGTGAGCTGGGTGAGACTATGGCTCTTGGAACAAAGGAGGAACTTGAAGAACAGAAAACTACTCAAGGAATGGGCTCTAAGACATTAAAATCGCCTGAAAAAGAATCAGAAGATAGTGAAAACTCCTCATCGGACGAATCTGATGATTTGAATGACGACATGCAGTTGTTTGTTTGCCCTGAGTGTTCTATGGTATTTCAAACAGAAGATGCTCTTGATTTGCATATTACATCTAAATGTTCCCATCCAGAAGATGAATCAACTTCAAGAGATGACTCAAAAACAAGTAGCTACTCATGCCACCAATGCAATAATGCTACCTTCTCAACTTACATAAGTTTGAGCAAACACTACAAACAATGCCCCAAGTTAAATGAGAGTAGACCTGAATCTAAATTAAAAGAAGAGTCAGATGTGTCAAATGGGCTTGAGGGAAATCAAAATGAAGACAGTTCTGATAGTAGCTCGAGCAGTAAATCAGATCAAGATGGCAGTAGCAGTAGTTCCAGCAGTTCAAGTAGCAGTTCTAGTAGTTCTAATGATGACGACTCTCAAGATGAAGCTGACCATGACGATGATGTAGAGGAGGACTCTGAAGCTGATGAagaaggtggaggagaagGTTCTCTCACCTCTTAA
Protein Sequence: MSRIDSRADSFHSLCRLCASYDAVKLEIFGEEGKERSLVEKIQTCLPFQISKNDPLPKSLCYRCMYNLENFYDFRMGCVNAVALLESCLIADGGKNLDKASAEKRAKIMKHMSKATSRSSDVAMPQLEPELDAFQIPLSNSVKEEPDDTDLPKDEDDSLPKNKTSGTSDSNMPKLPSAIEDDEEGGNTDDDMEEIDEDEEDEKVIDIDPADYLESSVAVEMDESLHSPAKKSISPQKSTEPRELFTCQICGKTLSSKGHLSLHIRIHRDDGTDGNCNTSSSVSTSNSTGLPFCRPYRCDLCNKSYSSSKHLWGHVSSNHRGDPAVTCPECHRLFSSVNNLEEHKRSKHGDHTSDAGDELSKKLIIDEDSFGKMDSDGDTNQNGKRPRDLDEAAGSRRKRSKPRKIARTHSSESQGDEGDGEPLECVLCLETFPDVAQLMEHTKKHEEEHEETQAMVQAQSMMNSQNLSCLLCEKTFTLRNLLHDHLQSQHGIDPSDLLEHQKLSQDARLEMSIKAEIDEDQDHHMLAESMLESETVFCCEACIREFTDRSSLWLHMLYTHKEAAATACGLCLKVCGDLPSLTAHIQTCHTTSHLLNEKRRYSCSVCMRQHDSRKKLLSHVLIHDIGSAKPDDLIILNSDLYQAENQTENDFDEQDSHDTSFTNTPANLNMSTASSNSAVSAAAAVAANSPFACQICLKIFPNEEKMVKHKQNAHRQDALVHAASGVGTYHLFFRCEICGVSHQSKSDRWKHVYEVHRGDPTVTCSRNNCGKVFPSAELNQEHVNHHKVQGTTPNTCEICGKLWNSRVDYWKHMMGVHAEVVPFTCGVCLKILPDLPQLMEHVKSWHYPLTGGDYCCDICGRPYSNRSKMSRHRRIHFSLPGEDDVEIPAEDETPTKSGSDKKGVTVKSEPVDNAIKPKATSIHCEGCPNRTFSSREELIQHRRADHGMLTCDLCDKFYGRTSHLWKHVNKMHRGHPSVTCTHCGKLSASKSHLRSHVLKMHRPGVLVGHIENVQLPIPPAPEKKTERVLGPQACPQCSKVFCNRYRMLRHLKSCRMSPAMFNSGHQIFDEKPKGPATCQHCSKVFSSRKAMREHEHKYHIMYDCELCGEGAIPSKTALMDHIKIAHRGSEQLTCSIEGCGVVLRCSADREKHEKEHRSQRIPATCVKCGELCGSKSRLRQHMKIQHKLSPSILCTICVAIHPNIDDLRAHVQSEHAAIINRANTCKVCAKSVNSRRRLIHHINNNHDGASRLCTVCLGFFANQEELAKHTEDKHSKEEEEAEEESDSSSEDENGKDDKNQVDEDEEDEEDEEDDEEDDDEEGQGDGEDEESQESHSEEKSVEENSKADSDVSELTLNGIDDAKQHGSSLASDDISSSSENSEKSQEKQVVSEGRPRRSYKCNICKETFKMPSLLMQHQKQRHRSGSVPMQCPSCDKKFSNKLIFSNHVNLCKREKSSILQQTLETGKGGFKDKSSRVVQLAEMAGFNGHFLEGGDDGKDSSPGSSSARARIQRKVYGENEGPIHCSLCNKVWPSLRQQWQHLIRTHREAAATTCGVCLEICSDYATLKVHLHEMHPDTWEGEGKNFTCRICGRYHNARSKLELHNTIHLGLEGELGETMALGTKEELEEQKTTQGMGSKTLKSPEKESEDSENSSSDESDDLNDDMQLFVCPECSMVFQTEDALDLHITSKCSHPEDESTSRDDSKTSSYSCHQCNNATFSTYISLSKHYKQCPKLNESRPESKLKEESDVSNGLEGNQNEDSSDSSSSSKSDQDGSSSSSSSSSSSSSSSNDDDSQDEADHDDDVEEDSEADEEGGGEGSLTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732071;
90% Identity: iTF_00732071;
80% Identity: -