Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000282.1:288188-295783[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 2.3e-06 0.0002 22.4 1.4 1 23 242 264 242 264 0.98

2 28 0.00027 0.023 15.9 1.9 1 23 294 317 294 317 0.96

3 28 0.0013 0.11 13.8 1.5 2 23 324 346 323 346 0.96

4 28 0.02 1.7 10.0 0.1 2 23 422 443 421 443 0.96

5 28 0.035 3 9.2 2.5 1 23 465 488 465 488 0.96

6 28 0.092 7.9 7.9 1.3 1 23 534 557 534 557 0.93

7 28 0.15 13 7.2 0.8 3 23 565 586 563 586 0.96

8 28 0.062 5.3 8.5 0.2 1 23 686 709 686 709 0.94

9 28 2.1 1.8e+02 3.7 0.8 1 22 728 749 728 751 0.85

10 28 0.043 3.7 9.0 0.5 2 23 758 781 757 781 0.93

11 28 0.18 16 7.0 0.1 2 23 790 812 790 812 0.94

12 28 0.29 25 6.4 0.0 1 23 818 841 818 841 0.97

13 28 5.9e-05 0.0051 18.0 2.8 1 23 849 871 849 871 0.98

14 28 0.027 2.4 9.6 1.6 3 23 918 940 916 940 0.93

15 28 0.00074 0.064 14.5 1.9 2 23 944 966 943 966 0.96

16 28 0.0029 0.25 12.7 3.3 2 23 973 995 972 995 0.95

17 28 0.013 1.1 10.6 1.7 3 21 1028 1046 1027 1047 0.94

18 28 0.052 4.5 8.7 5.4 2 23 1071 1093 1071 1093 0.94

19 28 8.7 7.5e+02 1.7 0.1 1 23 1096 1120 1096 1120 0.77

20 28 0.06 5.2 8.5 2.3 2 23 1158 1180 1158 1180 0.96

21 28 0.094 8.1 7.9 2.2 2 23 1218 1240 1218 1240 0.96

22 28 0.011 0.92 10.9 0.1 3 23 1247 1268 1246 1268 0.93

23 28 2e-05 0.0017 19.4 1.6 1 23 1396 1419 1396 1419 0.97

24 28 0.087 7.4 8.0 0.3 2 19 1427 1444 1426 1447 0.82

25 28 5.5 4.7e+02 2.3 0.4 2 23 1520 1542 1519 1542 0.89

26 28 0.55 47 5.5 2.3 2 23 1549 1571 1548 1571 0.93

27 28 0.032 2.7 9.4 0.0 1 20 1666 1685 1666 1687 0.93

28 28 2.9 2.5e+02 3.2 1.2 1 21 1707 1728 1707 1729 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	2.3e-06	0.0002	22.4	1.4	1	23	242	264	242	264	0.98
2	28	0.00027	0.023	15.9	1.9	1	23	294	317	294	317	0.96
3	28	0.0013	0.11	13.8	1.5	2	23	324	346	323	346	0.96
4	28	0.02	1.7	10.0	0.1	2	23	422	443	421	443	0.96
5	28	0.035	3	9.2	2.5	1	23	465	488	465	488	0.96
6	28	0.092	7.9	7.9	1.3	1	23	534	557	534	557	0.93
7	28	0.15	13	7.2	0.8	3	23	565	586	563	586	0.96
8	28	0.062	5.3	8.5	0.2	1	23	686	709	686	709	0.94
9	28	2.1	1.8e+02	3.7	0.8	1	22	728	749	728	751	0.85
10	28	0.043	3.7	9.0	0.5	2	23	758	781	757	781	0.93
11	28	0.18	16	7.0	0.1	2	23	790	812	790	812	0.94
12	28	0.29	25	6.4	0.0	1	23	818	841	818	841	0.97
13	28	5.9e-05	0.0051	18.0	2.8	1	23	849	871	849	871	0.98
14	28	0.027	2.4	9.6	1.6	3	23	918	940	916	940	0.93
15	28	0.00074	0.064	14.5	1.9	2	23	944	966	943	966	0.96
16	28	0.0029	0.25	12.7	3.3	2	23	973	995	972	995	0.95
17	28	0.013	1.1	10.6	1.7	3	21	1028	1046	1027	1047	0.94
18	28	0.052	4.5	8.7	5.4	2	23	1071	1093	1071	1093	0.94
19	28	8.7	7.5e+02	1.7	0.1	1	23	1096	1120	1096	1120	0.77
20	28	0.06	5.2	8.5	2.3	2	23	1158	1180	1158	1180	0.96
21	28	0.094	8.1	7.9	2.2	2	23	1218	1240	1218	1240	0.96
22	28	0.011	0.92	10.9	0.1	3	23	1247	1268	1246	1268	0.93
23	28	2e-05	0.0017	19.4	1.6	1	23	1396	1419	1396	1419	0.97
24	28	0.087	7.4	8.0	0.3	2	19	1427	1444	1426	1447	0.82
25	28	5.5	4.7e+02	2.3	0.4	2	23	1520	1542	1519	1542	0.89
26	28	0.55	47	5.5	2.3	2	23	1549	1571	1548	1571	0.93
27	28	0.032	2.7	9.4	0.0	1	20	1666	1685	1666	1687	0.93
28	28	2.9	2.5e+02	3.2	1.2	1	21	1707	1728	1707	1729	0.93

Sequence Information

Coding Sequence: ATGAGTAGAAGCGATAGCCGGGCGGACAGCTTTCACAGCTTGTGCCGCCTCTGCGCGTCGTACGATGCCGTCAAACTCGAGATCTTCGGGGAGGAGGGCAAGGAGAGGAGTCTGGTGGAGAAGATACAGACCTGCCTCCCATTCCAGGTTTCCAAAAATGACCCCCTTCCAAAATCCCTATGCTACCGATGTATGTACAATTTGGAAAATTTCTATGACTTTCGAATGGGTTGTGTAAATGCGGTAGCTCTTTTAGAGAGCTGCCTGAAAGCAGATGGTGGGaaaaatttggACAAGGCTTCAGCTGAGAAAAGAGCCAAAATAATGAAACATATGTCAAAATCAGCTCTGCAAAGTTCAGATGCTGTAATGCCACAACTTGAACCAGAGCTTAATGCATTTCAGATTCCAATCACAAATTCTGTGAAAGAAGAGCCTTTAGATACTGATCTTATCAAGGATGATGGGAGCTCACACTCCAAGATCAAATCATCTGACTCGAATATGCCTAAACTCCCATCTGCAATTGAAGATGATCAGGAAGGTGGCAATACTGATGATGATATGGAGGAAAttgatgaggatgaggaggatgagAAAGTTATTGATATTGATCCTGCAGACTACTTGGAGTCTAGTGTGGCTGTAGAAATGGATGAATCCTTAAACTCATCAGCAAAgAGAAGTGTTTCTCCTCAAAAATCCAGTGAACCATGTGAATTGTTCACATGTAAAATTTGTGGCAAAACACTTTCCAGCAAAGGCCATTTATCTCTTCACATAAGAATTCACCGCGATGATGGCACCGAGGGTAATTGCAACACCAGCTCCTCCTTGTCAACTAGCAATTCTACACAAGGATTATCATTCTGCAGACCATACCGATGTGACCTGTGCAACAAAAGCTACTCATCTTCAAAACATTTGTGGGGTCATGTTAGTTCTAATCACAGAGGGGACCCAGCTGTAACATGTCCCGAATGTCATCGCCTGTTTTCCTCTGTAAACAATTTGGAGGAGCACAAGAGGTCAAAACATGGTGATCACACGAGTGAGACAGGAGATGAGTTGTCAAAGAAATTAATAATTGATGAGGATTCATATAATAAAATGGATTCTGATGGTGACACAAATCAGAATGGAAAGAGACCCAGAGATTTAGATGATGCTAATGCAAGCAGAAGGAAACGCTCCAAACCTAGGAAAATAGCTCGTACTCATAGCTCTGAGTCTCAAGGAGaAGAAGGTGATGGAGAGCCATTGGAGTGTGTTTTGTGTCGTGAAACGTTCCCTGATGTAGCTCAGCTCATGGAACATACCAAAAAGCATGAGGAAGAACATGAAGAGACACAAGCTATGGTACAAGCTCAAACTATGATGAACTCACAGAGCCATAGTTGCTTACTTTGTGAGAAAACCTTCCCTCTTAGGGATTTACTTCACGACCATCTTCAGAGCCAACATGGTATAGATCCCTCTGATTTAATGGAGCATCAAAAGCTTTCTCAAGATGCCAGACTAGAAATGGCCATCAAGTCAGAAATGGATGATCAGGATCACCACATGCTAGCTGAAAGCATGTTAGAGTCAGAAACTGTGTTTTGCTGTGAGGCATGCATACGTGAATTCACTGATCGCTCTAGTTTGTGGTTACACATGTTGTACACCCACAAAGAGGCAGCTGCTACTGCTTGTGGTCTTTGCCTGAAGGTGTGTGGTGATCTGCCAAGCCTCACTGCACACATTCAAACTTGCCACACTACCAGCCATCTACTAAATGAGAAGCGACGTTATAGCTGTTCTGTCTGCATGAGGCAGCATGATTCTCGGAAAAAACTGTTGCAACATGTTCTCATCCATGACATTGGACTAGCCAAGCCTGATGATCTTATCATCCTTAATTCTGACTTGTATCAAGCAGAGaatcaaaatgaaaatgattTTGATGAGCAAGACAGTCATGATACTTCGTTTACAAATACTCCCGCTAATTTAAACACAGCATCTTCCAACTCTGCTGTTTCTGCAGCTGCTGCAAATGCAGCCAACTCTCCCTTTGCTTGTCAGATTTGCTTAAAAATATTCCCTAATGAGGAAAAAATGGTTAAGCACAAGCAAAATGCACACCGACAGGATGCTCTAgtTCATGCTGCTACTGGAGTGGGCACATACCACCTCTTTTTCAGATGTGAAATATGTGGAGTGTCCCATCAAAGCAAATCGGACAGATGGAAACATGTCTATGAAGTACACAGGGGTGATCCAAGTGTTACCTGTAGCAGAAGTAATTGTGGTAAAGTGTTTCCCTCAGCAGAGCTCAATCAAGAGCATGTCAATCATCATAAAGTGCAGGGAACAACTCCCAATACTTGTGAGATTTGTGGAAAACTGTGGAATTCTCGGGTTGACTATTGGAAGCATATGATGGGGGTGCATGCAGAAGTTGTACCTTTTACATGTGGTGTTTGTCTCAAAATTCTACCTGACTTGCCACAGTTGATGGAACATGTTAAGTCATGGCATTATCCTTTGACCGGGGGTGATTATTGTTGTGACATTTGTGGGCGACCTTATTCAAACAGGTCTAAAATGTCTCGTCACCGAAGGATACATTTTTCTCTTCCGGGGGAGGATGTGGAAATTCCAGCAGAAGATGAATCTCCAACTAAATCGGGTTCTGACAAGAAAGGAGTGGCTGTTAAAAATGAGACATCAGACAATGCTGTGAAATCCAAAGTGACAAGTATTCACTGCGATGGCTGTCCCAATCGAACATTCTCTTCTCGTGAAGAATTAATACACCATAGGCGAGCTGATCATGGCATGCTCACATGTGATCTATGTGACAAGTTCTATGGTCGCACCTCTCATCTGTGGAAACATGTTAACAAGATGCACAGAGGACATCCATCTGTTACATGTACTCACTGTGGCAAGCTATCAGCGTCAAAGTCACATCTTCGCAGCCATGTTCTAAAAATGCACCGACCAGGTGTTCTTGTTGGGCATACTGAAAATGTACAGTTACCTACACTAACAGCGCCTGAAAAGAAGACTGAGAGGGTGCTGGGACCACAGGCTTGCCCTCAATGTTCAAAAGTATTCTGTAATAGATACAGAATGTTACGGCATTTAAAAAGCTGTAGAATGTCTCCAGCCATGTTCAATTCTGGTCATCAAATATTTGATGAGAAACCTAAAGGACCAGCTACATGTCAGCATTGTTCCAAGGTCTTCTCATCCAGGAAGGCGATGAGGGAACATGAGCATAAATACCATGTAATGTATGATTGTGAACTGTGTGGTGAAGGAGCCATACCCAGTAAGACAGATCTGATGGACCATATCAAAATCGCCCATCGAGgTTCAGAACAGCTGACATGTTCCATTGAAGGGTGTGGCGTAGTTTTGAGGTGTTCTGCAGATCGggaaaaacatgaaaaagaGCATAAAACGCAACGCGTACCAGCAACTTGTGTGAAGTGTGGTGAGCTTTGTGGCAGCAAATCTCGGTTGAGACAGCATATGAAGATACAGCACAAACTCAGTCCCAGCATACTTTGCAGCATTTGTGTTGCTATTCATCCTAACATTGATGATCTACAGGCTCATGTCCAAGCTGAGCATGCTGCTATAATAAATCGTGCAAATACCTGTAAAATCTGTGCTAAATCAGTGAACTCACGGAGACGTCTCATTCATCATATCAACAACAATCATGATGGCGCTTCACGTCTGTGCACTGTTTGCTTGGAATTCTTCTCTAATCCAGAAGAGTTGGCAAAGCACATAGAGGACAAACACTCCAAAGAAGAGGAAGATGCTGAAGAAGATAGTGACTCATCATCAGAAGATGAGAATGGGAAAGAGGATAAAAACCAAGTcgaagaagatgatgatgaagaggatgaagacgaggatgatgacgacgacgaggatgatgatgaagagGGTCAAGGAGAtggtgaagatgaagatgagtCTCAGGAGTCCCACTCGGAGGAAAAGTCAGTGGAGGAAAATTCAAAAGCAGATAGTGATGTTAGTGAACTTACTTTGAATGGGATTGATGAGGCAAAACAGCATGGTAGCTCACTTGTTTCTGATGACATTTCCTCTAGCTCAGAAAACAGTGAAAGAAGCGAAGAAAAGCAAGTTGCCTCTGAGGGGAGGCCTCGTAGGTCCTATAAGTGCAACATTTGTAAAGAGACGTTTAAAATGCCATCCCTCCTCATGCAACATCAGAAGCAAAGACATCGTTCAGGTTCAGTTCCCTTGCAGTGTCCATCCTGTGATAAGAAATTCTCCAACAAACTTATTTTTACAAACCATGTTAATCTTTGTAAGCGTGAAAGGAGTTCAATTTTACAACAAACTTTAGAAACAGGAAAAGGGGGCTTCAAGGACAACACAAATAGAGTGGTTCAACTTGCTGAAATAGCGGGATTTAATGGTCACTTCCTTGAAGGAGGTGACGATGGGAAGGATGGCAGTGCAGGGAGCTCAGCACGTGCAAGAATTCAGCGTAAAGTTTATGGCGAAAATGAAGGTCCCATTCATTGCCCCTTGTGTAACAAAGTGTGGCCCTCTTTGAGGCAACAATGGCAGCATCTTATTCGCACCCACAGAGAAGCTGCAGCTACAACATGTGGTGTTTGCCTTGAAATATGTACTGACTATTCAACATTGAAGACACACTTGCATGAAATGCATCCTGACACATGGGAGGGAGAAGGTAAAAATTTCACATGCCGAGTATGTGGCCGCTACCATAATGCCAGATCAAAACTTGAGCTTCACAATACCATTCATCTTGGTTTGGAAGGTGAGCTGGGTGAGGCAATGGGTCAGCGTTCAAAGGAGGAACTTGAAGAGAGTAAAGAAACCAAGGGAATCGCTTCTAAGTTGCACTTAAAATCCCCTAAAAAGGAATCTGAAGACAGTGAAGACTCTTCTTCAGCTGAATCTGATGATTTAAATGATGATATGCAGTTATTTGTGTGCCCAGAGTGTTCTATGGTTTTTCAAACGGAAGATGCCCTTGATTTGCATATTACTTCAAAATGTGCTCAACCAGAAGATGATTCAACTTCCAGAGAAGACTCTAAACCTAGAAGTTACTCTTGCCAACGATGCAATAATGCCACCTTTTCAAATTACATTAGCTTGAGCAAGCACTACAAACAGTGTCCAAAATCAAATGAATGTGGACCTGAGTCTAAATTAAAAGAAGGGTCAGATGTGTCAAATGGGCTGGAGGGAAATCAAAATGAGGACAGTTCAGACAGCAGCTCTAGTAGTAAATCAGATCAAGATGGCAGCAGCAGTAGTTCAAGCAGCTCAAGTAGTAGTTCTAGCAGTGACGATGATTCTCAAGATGAAGCTGACCATGATGATGATGTCGAGGAGGATTCAGAAGCTGAAgacggtggaggaggagaaggtgagAAAAGTATTTCTTACATTTCTTGTAAATCTTCTGAAAATTTTATGAGGGAGGTCAAAAAATTAGAAGCAGCAGTCCTATGA
Protein Sequence: MSRSDSRADSFHSLCRLCASYDAVKLEIFGEEGKERSLVEKIQTCLPFQVSKNDPLPKSLCYRCMYNLENFYDFRMGCVNAVALLESCLKADGGKNLDKASAEKRAKIMKHMSKSALQSSDAVMPQLEPELNAFQIPITNSVKEEPLDTDLIKDDGSSHSKIKSSDSNMPKLPSAIEDDQEGGNTDDDMEEIDEDEEDEKVIDIDPADYLESSVAVEMDESLNSSAKRSVSPQKSSEPCELFTCKICGKTLSSKGHLSLHIRIHRDDGTEGNCNTSSSLSTSNSTQGLSFCRPYRCDLCNKSYSSSKHLWGHVSSNHRGDPAVTCPECHRLFSSVNNLEEHKRSKHGDHTSETGDELSKKLIIDEDSYNKMDSDGDTNQNGKRPRDLDDANASRRKRSKPRKIARTHSSESQGEEGDGEPLECVLCRETFPDVAQLMEHTKKHEEEHEETQAMVQAQTMMNSQSHSCLLCEKTFPLRDLLHDHLQSQHGIDPSDLMEHQKLSQDARLEMAIKSEMDDQDHHMLAESMLESETVFCCEACIREFTDRSSLWLHMLYTHKEAAATACGLCLKVCGDLPSLTAHIQTCHTTSHLLNEKRRYSCSVCMRQHDSRKKLLQHVLIHDIGLAKPDDLIILNSDLYQAENQNENDFDEQDSHDTSFTNTPANLNTASSNSAVSAAAANAANSPFACQICLKIFPNEEKMVKHKQNAHRQDALVHAATGVGTYHLFFRCEICGVSHQSKSDRWKHVYEVHRGDPSVTCSRSNCGKVFPSAELNQEHVNHHKVQGTTPNTCEICGKLWNSRVDYWKHMMGVHAEVVPFTCGVCLKILPDLPQLMEHVKSWHYPLTGGDYCCDICGRPYSNRSKMSRHRRIHFSLPGEDVEIPAEDESPTKSGSDKKGVAVKNETSDNAVKSKVTSIHCDGCPNRTFSSREELIHHRRADHGMLTCDLCDKFYGRTSHLWKHVNKMHRGHPSVTCTHCGKLSASKSHLRSHVLKMHRPGVLVGHTENVQLPTLTAPEKKTERVLGPQACPQCSKVFCNRYRMLRHLKSCRMSPAMFNSGHQIFDEKPKGPATCQHCSKVFSSRKAMREHEHKYHVMYDCELCGEGAIPSKTDLMDHIKIAHRGSEQLTCSIEGCGVVLRCSADREKHEKEHKTQRVPATCVKCGELCGSKSRLRQHMKIQHKLSPSILCSICVAIHPNIDDLQAHVQAEHAAIINRANTCKICAKSVNSRRRLIHHINNNHDGASRLCTVCLEFFSNPEELAKHIEDKHSKEEEDAEEDSDSSSEDENGKEDKNQVEEDDDEEDEDEDDDDDEDDDEEGQGDGEDEDESQESHSEEKSVEENSKADSDVSELTLNGIDEAKQHGSSLVSDDISSSSENSERSEEKQVASEGRPRRSYKCNICKETFKMPSLLMQHQKQRHRSGSVPLQCPSCDKKFSNKLIFTNHVNLCKRERSSILQQTLETGKGGFKDNTNRVVQLAEIAGFNGHFLEGGDDGKDGSAGSSARARIQRKVYGENEGPIHCPLCNKVWPSLRQQWQHLIRTHREAAATTCGVCLEICTDYSTLKTHLHEMHPDTWEGEGKNFTCRVCGRYHNARSKLELHNTIHLGLEGELGEAMGQRSKEELEESKETKGIASKLHLKSPKKESEDSEDSSSAESDDLNDDMQLFVCPECSMVFQTEDALDLHITSKCAQPEDDSTSREDSKPRSYSCQRCNNATFSNYISLSKHYKQCPKSNECGPESKLKEGSDVSNGLEGNQNEDSSDSSSSSKSDQDGSSSSSSSSSSSSSSDDDSQDEADHDDDVEEDSEAEDGGGGEGEKSISYISCKSSENFMREVKKLEAAVL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733416;
90% Identity: iTF_00733416;
80% Identity: -