Focc012565.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML762990.1:1724512-1733948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0016 0.089 13.2 0.5 1 23 504 526 504 526 0.99 2 10 0.0013 0.072 13.5 0.3 1 23 536 558 536 558 0.98 3 10 2e-05 0.0011 19.2 0.4 2 23 838 860 837 860 0.95 4 10 0.017 0.95 9.9 1.5 1 23 956 979 956 979 0.96 5 10 0.00015 0.008 16.5 1.8 3 23 1010 1030 1008 1030 0.97 6 10 6e-06 0.00032 20.9 1.1 1 23 1036 1058 1036 1058 0.98 7 10 0.0011 0.061 13.7 3.9 1 19 1064 1082 1064 1087 0.92 8 10 1.5e-07 8e-06 25.9 0.7 1 23 1093 1115 1093 1115 0.99 9 10 1.1e-05 0.00062 20.0 2.1 1 23 1121 1143 1121 1143 0.98 10 10 5e-06 0.00027 21.1 2.1 1 23 1149 1171 1149 1171 0.98
Sequence Information
- Coding Sequence
- ATGGATGAGAGCTCGCAAGGCTCTGTTGAAATGATTGAGGGTGTGGAGATAATGACACCTCATGTTGAAAAACTCGGAGGCACTATGCGTGATGAATACTTACACACTCAATGTATTGACATACAGCGTGTACACGGGGGCTCACCTGGAGGAACATTGCTCACCACTGATCTAATGCAAGCCCACTTACATCCTCAGATGGTGGAAGAATTTACTACTCATGGGGGACAAGAATATTATGAACATCACATATTACAAGAACATGATCTAGCTGATGCTGATCGTCATCTTGTTGAGCTGACAGTTGTAGAGGAGCCTCAAAACTTATCATCGCCTGTAACTGTTGTGGGTGAGAAAGGTGGAATAGCTATGCTCTCTGCCTACATCCAGACCACAAGCGATATGACCCCAACTCAACACATAATCATTGATTCTAGTGATAGAAGTGTCAAGATGTTTCCGCAACAAAGACTACCTTCAATGTCACAGCTTCCCCCTTTGAAAAAGGCTTTAACTAACTCAACAATCCGAAGTCGATATTTGAGACCCCAGTCACATCATTCACTTGATGAGGAAGTTACACTGACGCCTATGACAACAACTCACCATTCTCTAGATGGTTCAAATGTGATAGTTGGACACCACATAGTACAAGATGGGACCACTGATGGACATCATAGGTTACTGGCCACAACAGATGCAGATGGACATACCATTTTGGTTGAAGATCCCATACCTTCTGGTCATCGCTTAATAACACAAGATAACCAACGAATTCTAGTTGCGCAGGACGCATCAATGGCTCATAGTTTGACTACGTCAAATGGTAGCCATAGGCTTGCCACAAGCATTAATGGTCATCGGATGCTGGACGTCCAAACAGATCATACAACTCGCTACTTGACTCATCAGGAAGCAAGTGTTGTCACTAGTATGGCAAGTCAAAGACTGATAACTCAATCCCATCAAACTCAAGTTCAGACTCAAGCTGAAATGGATGTTGCTGAAAGACTTTTAGATGAAGAATCTCCTGAACATCAAATGCTTGTACAAGAACAGCTCATTCATGTTGTTCTTGACCAAAATGCCCAAGCAGAACTGGGAGTTGTGGTACCAACTCCTGGTCAAAGAGTATTGCTTCAAGGACCAGAAGGGTGGACAACACTTGACCCTGCATCATGCGATACAGATACAGCTGATCATGATTCCAGAGATACAAGCATGGTAGAAATGCAGGAACAAGGACTGATAGTGAAGCATGAGGAAGTAGACCTAGCTGAAGGTATGGTTGAAGAGGTGGAAGGCCTAGACGGATCAGCTGAAGTTGGAGAGGGTAGTGATGGTGATGTACCCATTGAAGATATAAATGATTCAGATTTTGATGGGGAAGGGGACATGAGAACATCTAGGCGAAGTCTTCCTCACAAAAAGAGACTTTCTAAAAAGTTAAGAAATCCTCGTAAAGCACAGTCTGAATCTCCCCTGCCCAGAACtgttcATGCCAAATGTTACAAATGTAACAAGTGTGGAGATCAGTTTGATACTCAAGCTGCATATGCAACTCATAGAATTACCCACAACACAGACAGTAAAAAAGGATTATCTTATTCTTGTGAAATATGTGGCAAAACTATACCAAACCAACTGAAGTTTTTTGAACACTTGAAGGTCCACTATGAACCTGTCACTGGTACATTTGTGGGTAACATATCACCAGAAGCAGAGGAATCTGTGAATGTGGAAAATGGCTCAAGTCATCCAAAAGTGACTGATCGCAATGTGAATTCTTCAGTTGTTGTTGTGAAAGATGACTCTCATCGATTACAACATCATATTGTTGAAATTCAGCagccacaacagcagcaacataATCTTCAACCATTGGTGCAAGATCATGCTCAGCAACAAACTCATCACCACCAAGTTCTGCAACAACACAATCAAAGGCTTGTTCAACGACAGGCTGCTCACACTCCTCAGCATCACCAGGGCTTACAAGGACAGCGGCAAGCAAGGCGTCAAgaagaaataattgaaaatcAGGATGTAGAGATGCAAACAATGATTCTAAAAGTAGAAAATATACCTGTCCAAGGTATGAATAAGCCTCATCATCAGTTAAATTCACACCATCaccaacaacatcaacagcagcaacatcaacaacagcaacagcaacagcagcagcaacagcagcagcagcagcagcagcagcagcagcagcagcatcaacagcagcagcaacatcaacagcagcaacagcagcaacagcagcaacagcaacagcaggctCACCTCCCTCAAATTCACCAACTTCAGAATGGTCGTTTGAGGTCATCAAAAAATGACCAAGAGAACCTTCAACATATTCAGCATCGTAATCAACAGCACCATGTTCAAGCAAGTCGCCAAAGTCATCCATCCTTGCAACACACTGTAATTGAAACAGAACCTCCCCCATTAGTTCCTATCCTTCCCCCTGTTTCAACCATTACAGGATCTCTTAATTTATCATGCAATATTTGTGGAAAACTCTTTAGACGTCAAAAAACACTAgaaactcatctaagtgttgcTCATCCAAAACAGGAAGATATAGAACAATTTAGTGACCCAGAAGACATGATGGAAGGTATACGAGAAGTTGTGGAGTCAATGGTCCGCTTGACTACTTTAACAACTCATGGATCTGATAACCTTCAGAAATCCCACTCTGTCTGGTACAGAGACGAAGATCTTTCAGCAACAGAAGCTGATCTGCAAGCTTTACAACATGCTGAGAATGAGCAGCACCACAGCCAAGAGCAACACATTCAGCAACAACCTACACCGCAACAGCAGCCGTCACAACAGCTTGAGTTAAATCACATGTGTGAATTGTGTGGAGATGCATTTCACTCTAAAGCAAGGTTAAATCAACACCTTAGAATAGAACATTTAGAATTGCGacagaaagggaaagaaaaaaatacagaggacgatgacgacgaatCTCCAAGAGGAAAGAAACCCCTTAAGCGACTTGCATGCACTCAGTGTGATCGAGTATTTAACCATCGCAATTCTTTAGTTTACCACCTACGAAGTCATTCAGGGGAGAGACCTCATCAATGTGAAGAGTGTGGGAAAAGCTTTTTTGCAACTAGTGCACTGAAGGTTCATATGCGGCTCCATTCTGGAGATAAGCCTTACAAATGTGAATTCTGTGGAAGAAATTTCCGCCAATGGGGAGATCTTAAGTACCATTGTACATCCCGTCACTCAGAAGAAAAGCAGTACCAATGTGAATATTGTGGAAAGGACTTTGCTCGCAAGTATTCACTTATTGTTCACCGGCGCATACATACTGGAGAAAAGGACTATGTATGTGAATTTTGTAATAAGAAGTTCCGAGCTTCCTCGTATCTCCAAAACCACCGGAGGATTCACACAGGTGAAAAGCCACACCGCTGTGAGGTCTGTGATAAACCCTTTAGAGTGCGATCTGACATGAAACGTCATCTGAATACTCACAATAGAGAAAGACAGCGTGCAGCTGGTCCAAGTGCTGCCCGTGGCAATAACCATAAGATGGAGGTAGTAGAATCAGAAGCAGAGGTTGATACACCTGACTCGCAAGACCATACTTCTCTTCATCAAAATATTCACATACATGAATTGGAAAACTCCACTACAATCACAGTGATGAAGAATGATTCAGAAGGATTAGAGATTCTTCCTGATCACCCATCGGGCCACCATCAAAGCTCTACCACAATAAGTCTGAGCTCTCATACCACAGATGCTGGTCTTCAGTACGCCAGTGAGAGAGATTCTCTGGAGGGTCGTGCTCATGCAGCAGGGACAACACAATCTGGGCAGCTCGTGTATGTCTTACCCACCAATTATTACATGTAA
- Protein Sequence
- MDESSQGSVEMIEGVEIMTPHVEKLGGTMRDEYLHTQCIDIQRVHGGSPGGTLLTTDLMQAHLHPQMVEEFTTHGGQEYYEHHILQEHDLADADRHLVELTVVEEPQNLSSPVTVVGEKGGIAMLSAYIQTTSDMTPTQHIIIDSSDRSVKMFPQQRLPSMSQLPPLKKALTNSTIRSRYLRPQSHHSLDEEVTLTPMTTTHHSLDGSNVIVGHHIVQDGTTDGHHRLLATTDADGHTILVEDPIPSGHRLITQDNQRILVAQDASMAHSLTTSNGSHRLATSINGHRMLDVQTDHTTRYLTHQEASVVTSMASQRLITQSHQTQVQTQAEMDVAERLLDEESPEHQMLVQEQLIHVVLDQNAQAELGVVVPTPGQRVLLQGPEGWTTLDPASCDTDTADHDSRDTSMVEMQEQGLIVKHEEVDLAEGMVEEVEGLDGSAEVGEGSDGDVPIEDINDSDFDGEGDMRTSRRSLPHKKRLSKKLRNPRKAQSESPLPRTVHAKCYKCNKCGDQFDTQAAYATHRITHNTDSKKGLSYSCEICGKTIPNQLKFFEHLKVHYEPVTGTFVGNISPEAEESVNVENGSSHPKVTDRNVNSSVVVVKDDSHRLQHHIVEIQQPQQQQHNLQPLVQDHAQQQTHHHQVLQQHNQRLVQRQAAHTPQHHQGLQGQRQARRQEEIIENQDVEMQTMILKVENIPVQGMNKPHHQLNSHHHQQHQQQQHQQQQQQQQQQQQQQQQQQQQQQHQQQQQHQQQQQQQQQQQQQQAHLPQIHQLQNGRLRSSKNDQENLQHIQHRNQQHHVQASRQSHPSLQHTVIETEPPPLVPILPPVSTITGSLNLSCNICGKLFRRQKTLETHLSVAHPKQEDIEQFSDPEDMMEGIREVVESMVRLTTLTTHGSDNLQKSHSVWYRDEDLSATEADLQALQHAENEQHHSQEQHIQQQPTPQQQPSQQLELNHMCELCGDAFHSKARLNQHLRIEHLELRQKGKEKNTEDDDDESPRGKKPLKRLACTQCDRVFNHRNSLVYHLRSHSGERPHQCEECGKSFFATSALKVHMRLHSGDKPYKCEFCGRNFRQWGDLKYHCTSRHSEEKQYQCEYCGKDFARKYSLIVHRRIHTGEKDYVCEFCNKKFRASSYLQNHRRIHTGEKPHRCEVCDKPFRVRSDMKRHLNTHNRERQRAAGPSAARGNNHKMEVVESEAEVDTPDSQDHTSLHQNIHIHELENSTTITVMKNDSEGLEILPDHPSGHHQSSTTISLSSHTTDAGLQYASERDSLEGRAHAAGTTQSGQLVYVLPTNYYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732068;
- 90% Identity
- -
- 80% Identity
- -