Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010001142.1:2177376-2182350[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.7e-05 0.0031 18.6 0.2 1 23 505 527 505 527 0.99

2 10 0.0016 0.14 13.5 0.3 1 23 537 559 537 559 0.98

3 10 6.8e-06 0.00058 20.9 1.5 2 23 813 835 812 835 0.95

4 10 0.021 1.8 10.0 1.5 1 23 942 965 942 965 0.96

5 10 0.00017 0.015 16.5 1.8 3 23 996 1016 994 1016 0.97

6 10 7.1e-06 0.00061 20.9 1.1 1 23 1022 1044 1022 1044 0.98

7 10 0.0013 0.11 13.7 3.9 1 19 1050 1068 1050 1073 0.92

8 10 1.8e-07 1.5e-05 25.9 0.7 1 23 1079 1101 1079 1101 0.99

9 10 1.4e-05 0.0012 20.0 2.1 1 23 1107 1129 1107 1129 0.98

10 10 3.3e-06 0.00029 21.9 2.2 1 23 1135 1157 1135 1157 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.7e-05	0.0031	18.6	0.2	1	23	505	527	505	527	0.99
2	10	0.0016	0.14	13.5	0.3	1	23	537	559	537	559	0.98
3	10	6.8e-06	0.00058	20.9	1.5	2	23	813	835	812	835	0.95
4	10	0.021	1.8	10.0	1.5	1	23	942	965	942	965	0.96
5	10	0.00017	0.015	16.5	1.8	3	23	996	1016	994	1016	0.97
6	10	7.1e-06	0.00061	20.9	1.1	1	23	1022	1044	1022	1044	0.98
7	10	0.0013	0.11	13.7	3.9	1	19	1050	1068	1050	1073	0.92
8	10	1.8e-07	1.5e-05	25.9	0.7	1	23	1079	1101	1079	1101	0.99
9	10	1.4e-05	0.0012	20.0	2.1	1	23	1107	1129	1107	1129	0.98
10	10	3.3e-06	0.00029	21.9	2.2	1	23	1135	1157	1135	1157	0.98

Sequence Information

Coding Sequence: ATGGATGAGAGCTCGCAAGGCTCTGTAGAAATGATTGAGGATGTAGAAATGGTCACACCTCATGTGGAGAAACTGGGCGGCACAATGCGTGATGAATACTTGCATACTCAATGCATTGACATTCAGCGGGTACATGGGGGCTCTCCTGCTGGAACCTTACTCACCACAACGGATCTTATGCAGGCTCACTTACATCCCCAGATGGTTGAAGAATTTAGTACTCATGGAGGTCAGGAATATTACGAGCATCACATATTGCAAGAGCATGATTTAGCTGACCCAGATCGACACCTTGTGGAGCTCCAGACTGTTGTAGAAGAGCCTCAAAATTTATCATCACCGGTAACTGTTgtgggagagaaaggaggaaTAGCAGCAATGCTCTCTGCCTACATTCAGACTTCAAGCGACATGACATCCACCCAGCATATTATCATTGACTCTAGTGATAGAAGTCTGAAGATGTTTCCACAACATAGACTACCTTCAATGTCACAGCTTCCTCCTTTGAAAAAGGCTCTAACCAACTCAACAATTCGAAGCCGCTATCTGAGACCCCAGTCACATCATTCTCTTGATGAAGAAGTAACCTTGACGCCAATGACAAATACTCACCATTCTCTAGATGGTACAAATGTGATAGTTGGTCAACACATTGTGCAAGATGAGACTTCTGATGGTCATCATAGAATACTGGCCACAACAGATGCAGATGGCCACACCATTCTGGTTGAGGATCCAATATCTTCTGGTCATCGTTTGATAACTCAAGATAATCAACGAATTCTTGTTGCGCAGGACGCAACCATGGCTCATAGTTTGACCACATCAAACGGTAGCCATCGCCTCACTACAAGTCTTAATGGTCATCGGATGCTGGACGTCCCATCAGATCATACAACTCGCTACATAACTCACCAGGAAGCAAGTGTTGTCACTAGTATGGCAAGCCAAAGACTGATTACTCAACCCCACCAAAATCAAGTTCAGACCCAGGCTGAAATTGATGTTGCTGAAAGACTTTTAGATGAAGAATCTCCTGAACATCAAATGCTTGTGCAAGAGCAGCTTATTCATGTTGTTCTTGACCAAAATGCACAAGCAGAACTTGGTGTTGTGGTACCAACTCCTGGACAAAGAGTACTTCTTCAAGGACCAGAAGGGTGGACAACACTTGATCCTGCGTCATGTGAGCCGGAGACAGCTGATCATGATTCAAGGGATACTACCATGGTTGAAATCCAGGACCAAGGGCTGATAGTAAAGCATGAAGAAGTTGATCTGGCGGAAGCTATGGTTGAAGAGGTTGAGGGTCTAGATGGGTCTGCAGAAATTGGGGAGGGTAGTGATGGAGATGCACCTATTGAAGATGATTCAGACTTTGATGGTGAAGGAGACATGAGGACATCCCGTCGAAGCCTCCCCCACAAAAAAAGACTGTCTAAAAAGTTACGAAATCCTAGGAAAGCTCAGTCGGAATCTCCTCTTCCAAGAACTGTTCATGCTAAATGCTACAAGTGCAACAAGTGTGGAGAGCAATTTGAAACTCAAGCTGCCTATGCTGCTCACAGAATAACCCACAACCAAGACAGCAAAAAGGGACTGTCTTATTCTTGTGAAATCTGTGGGAAAACTATACCAAATCAATTAAAGTTctttgaacacttgaaagtccATTACGAACCGGTTACTGGTACATTTCTGGGTAACATAACACCAGCTGCTGATGAATCAGTAAATGTTGAGAATGGCACGGGGCATTCAAAAGTGACTGATCGCAATGTGAACTCACCAGCTGTTGTCATTAAAGATAATACTCAAAGGGTGCAACAGCATATAGTTGAACTTCAGCAGCCACAACAGCCATCCCAACAACAACATAATTTACAACCTTTGGTGCAGGATCATGCTCAGCAGCAAACTCACCACCAAGTTTTGCAGCAACACAATCAACGCCTAGTTCAACGCCAGCCCACTCAGACACCTCAGCACCATCAGAGTTTACAGGGACAGCGTGAGACAAGACGTCAGGAGGAATTAATTGAAAACCAAAATGTGGAAATGCAAACTATGATTTTAAAAGTAGAAAATGTGATTCCTGTGCAAGGTATGAACAAGACTCATCAGCAGTTGAATTCccaccaacaacaacatcaccagcaacagcaacatcatcaccagcagcaacagcagcagcagcaacaagctCATCTTCCACAAATTCATCAGCTACAGAATGGTCGTTTGAGATCATCAAAAACTGAACAAGAGAATCTTCAGAACATTCAGCATCGTAATCAGCAACAACATATCTCTACCACCCGCCAAAGTCATTCACAACAGAATCCTATGCAACACACTGTGATTGAGACGGAACCTCCCCCATTAGTTCCCATTCTCCCTCCTGTGTCAACTATTACAGGATCTCTGAATTTATCATGTAATATATGTGGAAAACATTTTAGACGCCAAAAAACTTTAGAAACTCATCTGAGTGTTGCTCATCCAAAACAggAAGACATAGAACAATTCAGTGATCCAGAAGATATGATGGAGGGTATAAGAGGAGTTGTGGAAGCTGGGGAGGAATCTGAAGATGATTCCGAATCAATCGTCCGCTTGACCACACTAACAACTCATGGAGCAGACACCCTTCAGAAATCCCACAATGTCTGGTATGGAGAAGAAGATCTATCTGCTACAGAAGCAGATTTACAAGCATTACAGCATGCTGAGAATGAACAACACCACAGTCAAGAGCAGCAACATATACAGCAACAAACCACTCAGCATCAGCAGCCAGCTCAACAAATGGAGTTAAATCACATGTGTGAGCTATGCGGTGATGCTTTCCACTCTAAAGCAAGGTTAAATCAACATTTAAGAATAGAACATTTAGAATTGCGtcagaaagggaaagaaaaaactactgaagatgatgatgatgagtcTCCTAGGGGGAAGAAGCCACAGAAGAGACTTGCATGTACTCAGTGTGATCGCGTTTTCAACCATCGAAATTCCTTGGTTTACCATCTACGAAGTCATTCAGGCGAAAGACCTCATCAGTGTGAAGAATGTGGGAAAAGCTTTTTTGCAACTAGTGCCCTCAAGGTCCATATGCGTCTCCATTCTGGTGATAAGCCTTACAAGTGTGAATTTTGTGGAAGAAACTTCCGCCAATGGGGAGATCTCAAATACCACTGTACATCACGTCACTCTGAAGAAAAGCAGTATCAGTGTGAATATTGTGGCAAAGACTTTGCTCGCAAATACTCCCTTATTGTCCATAGACGTATACACACTGGTGAAAAAGATTACGTATGTGAATTTTGTAATAAGAAGTTCAGAGCATCCTCCTATCTTCAGAACCACCGTAGAATTCACACAGGCGAAAAGCCACACCGTTGTGAGATCTGTGATAAACCATTTAGAGTACGATCTGACATGAAACGCCATCTGAACACCCATAATAGAGAAAGACAGCGTGCTGCTGGACCAAGTGCCTCTAATGGCCGTGTAAACAATCCGAAAATGGAGGCAGTAGAATCAGAAGGAGATGTTGATACACCTGACTCACAAGATCACACCTCCATCCATCAAAATATCCACATCCATGAGCTGGAAAACTCAACAACAATCACAGTGatgAAGAATGACTCAGAGGGCATGGAGATTCTTCCTGATCACTCGTCAGGCCATCCTCAAAGTTCTACTACAATTAGTCTGAGCTCACACACCACTGATGCAGGTCTTCAATACTCTAGTGATAGAGATACCCTTGAGCCGCGGACTCATGGAGCTGGGACGACACAATCTGGACAGCTTGTTTATGTTTTGCCCACTAATTATTACATGTAA
Protein Sequence: MDESSQGSVEMIEDVEMVTPHVEKLGGTMRDEYLHTQCIDIQRVHGGSPAGTLLTTTDLMQAHLHPQMVEEFSTHGGQEYYEHHILQEHDLADPDRHLVELQTVVEEPQNLSSPVTVVGEKGGIAAMLSAYIQTSSDMTSTQHIIIDSSDRSLKMFPQHRLPSMSQLPPLKKALTNSTIRSRYLRPQSHHSLDEEVTLTPMTNTHHSLDGTNVIVGQHIVQDETSDGHHRILATTDADGHTILVEDPISSGHRLITQDNQRILVAQDATMAHSLTTSNGSHRLTTSLNGHRMLDVPSDHTTRYITHQEASVVTSMASQRLITQPHQNQVQTQAEIDVAERLLDEESPEHQMLVQEQLIHVVLDQNAQAELGVVVPTPGQRVLLQGPEGWTTLDPASCEPETADHDSRDTTMVEIQDQGLIVKHEEVDLAEAMVEEVEGLDGSAEIGEGSDGDAPIEDDSDFDGEGDMRTSRRSLPHKKRLSKKLRNPRKAQSESPLPRTVHAKCYKCNKCGEQFETQAAYAAHRITHNQDSKKGLSYSCEICGKTIPNQLKFFEHLKVHYEPVTGTFLGNITPAADESVNVENGTGHSKVTDRNVNSPAVVIKDNTQRVQQHIVELQQPQQPSQQQHNLQPLVQDHAQQQTHHQVLQQHNQRLVQRQPTQTPQHHQSLQGQRETRRQEELIENQNVEMQTMILKVENVIPVQGMNKTHQQLNSHQQQHHQQQQHHHQQQQQQQQQAHLPQIHQLQNGRLRSSKTEQENLQNIQHRNQQQHISTTRQSHSQQNPMQHTVIETEPPPLVPILPPVSTITGSLNLSCNICGKHFRRQKTLETHLSVAHPKQEDIEQFSDPEDMMEGIRGVVEAGEESEDDSESIVRLTTLTTHGADTLQKSHNVWYGEEDLSATEADLQALQHAENEQHHSQEQQHIQQQTTQHQQPAQQMELNHMCELCGDAFHSKARLNQHLRIEHLELRQKGKEKTTEDDDDESPRGKKPQKRLACTQCDRVFNHRNSLVYHLRSHSGERPHQCEECGKSFFATSALKVHMRLHSGDKPYKCEFCGRNFRQWGDLKYHCTSRHSEEKQYQCEYCGKDFARKYSLIVHRRIHTGEKDYVCEFCNKKFRASSYLQNHRRIHTGEKPHRCEICDKPFRVRSDMKRHLNTHNRERQRAAGPSASNGRVNNPKMEAVESEGDVDTPDSQDHTSIHQNIHIHELENSTTITVMKNDSEGMEILPDHSSGHPQSSTTISLSSHTTDAGLQYSSDRDTLEPRTHGAGTTQSGQLVYVLPTNYYM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733413;
90% Identity: -
80% Identity: -