Focc002650.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
zfy1
Assembly
None
Location
ML763102.1:207150-213730[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.49 27 5.4 0.7 1 23 181 204 181 204 0.96
2 16 2.6 1.4e+02 3.1 0.8 2 19 305 322 304 327 0.88
3 16 0.23 13 6.4 1.6 2 21 342 361 341 362 0.93
4 16 0.035 1.9 9.0 0.3 2 23 377 398 376 398 0.96
5 16 0.0013 0.073 13.4 4.3 2 23 403 424 402 424 0.96
6 16 6.2e-05 0.0034 17.6 3.5 1 23 431 453 431 453 0.99
7 16 9.6e-05 0.0052 17.1 0.3 1 23 459 481 459 481 0.96
8 16 1.7e-06 9.4e-05 22.5 0.2 1 19 487 505 487 507 0.96
9 16 0.14 7.6 7.1 4.0 2 23 515 536 514 536 0.91
10 16 0.00079 0.043 14.2 0.4 1 23 559 582 559 582 0.95
11 16 1.6e-05 0.00088 19.5 0.6 1 23 601 623 601 623 0.97
12 16 0.00036 0.02 15.2 1.0 1 23 629 651 629 651 0.99
13 16 9.4e-05 0.0051 17.1 1.8 1 23 657 679 657 679 0.98
14 16 0.00044 0.024 15.0 0.1 1 23 685 707 685 707 0.98
15 16 6.6e-06 0.00036 20.7 0.9 1 23 713 735 713 735 0.98
16 16 0.15 8.1 7.0 5.0 1 23 741 763 741 763 0.98

Sequence Information

Coding Sequence
ATGGAGCACGATTCTTCCTTTGCTCTCACCTTAGATGTTGGTTGTGTAGAGTACGAGTTCAATACTGAAGAGCAGCGCCTTGAAGGAATGTGTAGGGTATGTGCCTCCTCCGACACTGTGCTAATACCTGTTTTTGATTCTGCTGGGGAAAGCAAAGGCATTGTTGATCTTCTTAATAACCATCTACCTATTTTGGTAACACCTACTGACCTCCTTCCTGTGACAGTATGCACAGCATGCCTTGAAACTCTGTCTTCAATTCATTCTTTAGTTGAAGTCTGTGTCCAAGCTAATGAAAAAATGCAACAAATGCTTCCAGGCAACATTGTTGGGATATCTCAGCTAAATAATTATGAAATGTCAGAAGTTCAAGACTGTGATCCATCCCTTGGCTTTGAATCTTCATTGGAGAAAGAAGCAGACCAATTTACTGAACAGCCAGCTCAACAACCAGAGACTCTTAGGTTGATAGAGAGTGAGGCAGCAAATGAAGATGCTGAACAGTCAGCCAATAGTCAACCAAATAAAGATCATAAGTTGTATCGATGTCTGCACTGTGAAGTCACTGACAGTGATGCATATTCTCTTTTGCTTCACCAGATAAAGTCACACCCTGACAAACTATTAAAATGTAGCAATTGTGATTTTGTATGTAGTGCTGATCAAACAAGCAAGTACAATGAGCATTTAAAATTTCATTCTGAGGCAAAGGATTCATTTGGTTTGCTAGAAACCAAAAACAAAGCCCAAAATGAGGACTACTTTCAGAAAAGGAATTCTATTGGAAAAGATGAACTAATTAAACTTAAAGAAAACAATCAACAACCTGAAAATACGTCCAGCCGGAAAAGAACTTATGATAAAAGGAACCTGAACAGTACTAAACAAACAGCCAAAAAAGAGGCTCACTGGCGCTGTGGATTCTGTGGCATGAAGGCAAAATCCAAAGTTGGGTTAATTGATCATTGCAATCTCAGACATAAAGAACGTCTTGGATTGTCATTTCTAAACTCCGAGGCATTAGAGTGCACCAGATGTAAAGAAACTTTTGAAAGTGAATTATGGCTGAAAGACCACTTGTGCCACTCAGTTTTTCTCCCCAAGACTATTCCCACTCCTAAACAATTGTCATGTCTTACATGTCCTCAAGTATTTACAGAAGTGAAATTGTTTCGCGAGCACCTTTTGTCTCATACAAATTCTGTAAAATGTCATGTGTGTGGGGCTCACTTTAGATCTCAATCACATTTACAACCACATCTagataaacataaaaataaacagaCTTCTTTCCAATGCCCACACTGTCCAAGAAACTTCAAATTAAGGTCTCGGATGAAAATTCATCTACGAACACATACTGGAGAGAGGCCATACATGTGTGTAAAATGTGGGAAACAATTTTCTACAGATAGTGGATTTAGATTGCATATGGCTGCACATGAAGGTATAAAGCCGTATGTATGTTCACTTTGCGGCCAGACTTTTAATAGGCCATCTAACTTGAGGCGCCATGAGAGTTTTTGTGGGGACACCAAGCTACAGTGCAAAATCTGCAATGagaaattttcgtccagagaAGAAATGCATTGTCATAGAGCCATGCAtagtaaagaagaaaaagatgcTGAACAAGCTCTCTTTGATAATGAAACTacTTCTAAGGTAGATAGATTTTCTTGCAAGGTCTGTGGTATGAAGTTTGATCGTGTAGTAGAGTTATCACAACATAGACAGGAGTCCCACACTGCAGTTGAGGTTGACGAAGCTAAGAAAGCTGGCCAAGTGGATGGTGGTGCGTTTGTTTGTTCAGAATGTGGAAAAGAGgtTTACAGTAAGAAGAATTATGAGCGCCACATGCTGTTACACAGTGGCAATACGCAGTACCAGTGTAAAGAATGTGCAAACGTTTATTCAACAAAGTTTGCTCTCGAGTATCATATGTACACCCACACTGGTGAACGACCGTTCAAATGTGACCTTTGTCCTGAAGGATTCAAGACTAGAATTAgtttaaaaattcatcacaTGAAGcatactggagagaagccatacAAATGCCGCGTTTGTTCCATGGGATTCATTACTGCTGCAAGTCTGCGTCTCCATCTGGTGACTCATTCAGATACGAGAATGTTTTCTTGTGATTACTGCCCTGCAACATTTAAACGGAAAAAAACCCTGGTGACCCATGTTCGCATTcatacaggagagaaaccatatgaatgtAAATTCTGTGCAAGGCGTTTTACTCAAAAGGGTTCATGTTCTCAGCATGAAAAGACTCATTCAGAACCGAAAAATATGAGAATACCTGATGGTGTTGCAAATGACATGGAAGTCACAGTCATTAAAAATTGGAGGAATGAAGTGAGTGAGACTTTTCCTGAAGAGGATGCAAACAGAATCAATATTCTAGTTTCTCAAGGTGATGACAATGCATTGCAGTGTGAGGAAGTTCAACATATGGTGTTGATTCAACAAGATGTGGACTGTGTTATTGGCGAACCTGACCTATTGGAAATAAGTGAAGACATTGTGCTCCAGAGTAATAAACACACCATAGTTATTGAGCAAGATGGTATGTTAGCAGATGCTCCAATGACAGGTTTGAAAGATGCAAATTCTGATCCGCAAATGCCAGTCCTAGACGAATAA
Protein Sequence
MEHDSSFALTLDVGCVEYEFNTEEQRLEGMCRVCASSDTVLIPVFDSAGESKGIVDLLNNHLPILVTPTDLLPVTVCTACLETLSSIHSLVEVCVQANEKMQQMLPGNIVGISQLNNYEMSEVQDCDPSLGFESSLEKEADQFTEQPAQQPETLRLIESEAANEDAEQSANSQPNKDHKLYRCLHCEVTDSDAYSLLLHQIKSHPDKLLKCSNCDFVCSADQTSKYNEHLKFHSEAKDSFGLLETKNKAQNEDYFQKRNSIGKDELIKLKENNQQPENTSSRKRTYDKRNLNSTKQTAKKEAHWRCGFCGMKAKSKVGLIDHCNLRHKERLGLSFLNSEALECTRCKETFESELWLKDHLCHSVFLPKTIPTPKQLSCLTCPQVFTEVKLFREHLLSHTNSVKCHVCGAHFRSQSHLQPHLDKHKNKQTSFQCPHCPRNFKLRSRMKIHLRTHTGERPYMCVKCGKQFSTDSGFRLHMAAHEGIKPYVCSLCGQTFNRPSNLRRHESFCGDTKLQCKICNEKFSSREEMHCHRAMHSKEEKDAEQALFDNETTSKVDRFSCKVCGMKFDRVVELSQHRQESHTAVEVDEAKKAGQVDGGAFVCSECGKEVYSKKNYERHMLLHSGNTQYQCKECANVYSTKFALEYHMYTHTGERPFKCDLCPEGFKTRISLKIHHMKHTGEKPYKCRVCSMGFITAASLRLHLVTHSDTRMFSCDYCPATFKRKKTLVTHVRIHTGEKPYECKFCARRFTQKGSCSQHEKTHSEPKNMRIPDGVANDMEVTVIKNWRNEVSETFPEEDANRINILVSQGDDNALQCEEVQHMVLIQQDVDCVIGEPDLLEISEDIVLQSNKHTIVIEQDGMLADAPMTGLKDANSDPQMPVLDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00732067;
90% Identity
-
80% Identity
-