Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML762986.1:838018-846643[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.3 2.9e+02 2.1 0.1 3 11 565 573 563 585 0.77

2 18 0.25 14 6.3 0.0 3 23 593 613 592 613 0.95

3 18 0.0053 0.29 11.6 1.4 2 21 629 648 628 649 0.94

4 18 0.5 27 5.4 2.1 1 23 660 682 660 682 0.91

5 18 0.016 0.85 10.1 0.5 6 23 693 711 693 711 0.97

6 18 0.00014 0.0077 16.5 3.3 1 23 717 739 717 739 0.97

7 18 9e-06 0.00049 20.3 0.5 1 23 745 767 745 767 0.97

8 18 0.0075 0.41 11.1 6.5 1 23 773 796 773 796 0.94

9 18 7.8e-05 0.0042 17.3 0.7 1 23 811 833 811 833 0.98

10 18 0.023 1.3 9.5 1.7 1 23 848 871 848 871 0.95

11 18 0.039 2.1 8.8 0.1 1 23 877 899 877 899 0.98

12 18 0.00018 0.0099 16.2 0.7 1 23 925 947 925 947 0.98

13 18 0.0018 0.097 13.1 1.5 2 23 956 977 955 977 0.96

14 18 9.2e-05 0.005 17.1 0.5 1 23 983 1005 983 1005 0.97

15 18 0.0083 0.45 11.0 1.6 1 23 1011 1033 1011 1033 0.97

16 18 0.016 0.87 10.1 0.8 1 23 1039 1061 1039 1061 0.96

17 18 1.4e-06 7.4e-05 22.9 0.9 1 23 1067 1089 1067 1089 0.98

18 18 8.8e-06 0.00048 20.3 3.4 3 23 1097 1117 1096 1117 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.3	2.9e+02	2.1	0.1	3	11	565	573	563	585	0.77
2	18	0.25	14	6.3	0.0	3	23	593	613	592	613	0.95
3	18	0.0053	0.29	11.6	1.4	2	21	629	648	628	649	0.94
4	18	0.5	27	5.4	2.1	1	23	660	682	660	682	0.91
5	18	0.016	0.85	10.1	0.5	6	23	693	711	693	711	0.97
6	18	0.00014	0.0077	16.5	3.3	1	23	717	739	717	739	0.97
7	18	9e-06	0.00049	20.3	0.5	1	23	745	767	745	767	0.97
8	18	0.0075	0.41	11.1	6.5	1	23	773	796	773	796	0.94
9	18	7.8e-05	0.0042	17.3	0.7	1	23	811	833	811	833	0.98
10	18	0.023	1.3	9.5	1.7	1	23	848	871	848	871	0.95
11	18	0.039	2.1	8.8	0.1	1	23	877	899	877	899	0.98
12	18	0.00018	0.0099	16.2	0.7	1	23	925	947	925	947	0.98
13	18	0.0018	0.097	13.1	1.5	2	23	956	977	955	977	0.96
14	18	9.2e-05	0.005	17.1	0.5	1	23	983	1005	983	1005	0.97
15	18	0.0083	0.45	11.0	1.6	1	23	1011	1033	1011	1033	0.97
16	18	0.016	0.87	10.1	0.8	1	23	1039	1061	1039	1061	0.96
17	18	1.4e-06	7.4e-05	22.9	0.9	1	23	1067	1089	1067	1089	0.98
18	18	8.8e-06	0.00048	20.3	3.4	3	23	1097	1117	1096	1117	0.97

Sequence Information

Coding Sequence: ATGAAGGTTGTTTTGAAGAGTGTATCTGGGGAATCTATCACAGTTCAAGTGCACGCACAGGATACGGTAGGGGATCTGAAGAATCGGATCCAAACTCAAATGGGAATTCCATTTGACTTCAACCAACTGAAGATTCAAGGAAAGCCTCTCACTGATGACACTTTAGTTGTTGAATATTTTTCCCCAGCTGCTGATAAAAAGACTCGTGAACCTGTACCTGATCAAGGGAGATGGGATATTCCACCGTTAGAGTGCGCTGTGCCAGGCTGTGGCAATTCAAAGTCATCTACACCCGATCGGTCATTTTTCCGTTTTCCAATTCACACTGCTAACCGATGCCAGCACTGGGTTGTGGCCTGTAGAAGAACTGATCTCATTGACAAAGCCCCTGCATTTCTGAATCATCACTATGCTATCTGCTCTGACCATTTTGCACTGGATCAGTTCACAAATGCATCTCGAAAAGTGTTAAAGCGTAAAGCTATCCCCAGCATCTTTACTTGGCACTCTGAGGAGAGCAATGAATTTATAACTCCAGATGCCCTTCACTCTGATTCCATCCAAATAAATGAATCAACACCAGTAATGGTCAAAATGGAACCTGTGGATGTGGGTACTTCCTCTCCCATAACATTACTCTCAGCTGATATGCCAGTAGTCAGTATGGATGTTTCTGGTTCTGTAAGTGCTGAGAACATCATGGGGGATATCATaagtgatgatgaagaagatgatgatgaaggaATGGATGCTGAGgatgaatttgaattggacgaTGATTCAGACACCATACACCCTGGTCTTTTGTGTCGGCTTTGTGCAAATACTGTTAGTGACCCTGTTTATATATTCAGTGAAAATGGAAAAGACTTGGAGCTAGCAGCCAAAATCAACATTTGTTTACCTGTTACAGTTAAAAGGACTGATCCATTGCCCAAACAGCTGTGTGTTGACTGTAAATCAAAATTGGATGAATATCACGAGTTTGCTGAAGTGTGTGTTCAGGCAGAGGAAAAACTTCGTCTtctcacaaaaaagaaaaatttcaaagtctTGAAGCGTGGTACTAAAGAAACAACAGGTGTTGTCCCAAATGCACATACTCCACTTCATAATGAAAATGATCAAAATGGGGCAGATGAGAATGATTTACAATCAAAATCGTCGAAAGCTCCTACTTCTTTGAGACTTGTTGGTTCTGACTACTGCTGTCCCCTTTGTGTGGAAGGAAGCATGACTCAGGATGTTGATTCTGAACCAGATGTGGAGTTTGATGGAATGCACCAAAAGAGAGAGTTAGTGCGTGCATTCAGGAGGAAAGCTCGTCACTTGAGAAATGCACCAGGACTCATGCCCGGCATGAAAATTGAAGActcggaggaagaggaagaggatttCGATGAAGATGATGACTCTTCTGAAACTACTGAAGCAGAAGGGGATGGTGAAGGAAGTCAAGAAGCGGATGGTATCATTGCTGAGCTAAATACAACAGCTGGAGTTTATGCAACTTTTGTTGGCAACACAGATGATCTGTggaatgatgatgatgacaaGTCAGACTTGGGTACAGAATGCAGCTACCCCATGAGTGACTCAGAAAATTTGGCTTCTATACCTGAAGAAATGGAAATTCAGATGCAGCTTGAGGATGGACGGCATGAAGTAATTCAAATTGAACGGGACACCATTTGTCGACACTGTGGTGAACCATTCCCTGCCCTTGAACCTGCATTAGAACATTCAAAGGTACATGCTGATGTAAATAGCAATCCATGTGCTCTGTGTGACCTAGCTTTTGAAAGTATAGAAGACCTGCTTGAGCACTTCAAAGAGCATCGAGAAGAGGAACTAAACAGGAGACGACGAGCTCTGAACCGACTCCAATGTGAAACTTGTGGACGTCGTTTTAACAAGGAAACCACCATGGAAAAACATCAATGTGCTGTTGTTGCCAAAAGCAAGGAGAAACGAGCATTTAGATGTCTGCAATGCAAAAAGGCTTACACATCAGAAGATAGACTTCTGTTCCATCAGCAGTTTCATGATGGTGCTCCAGCAAATCTCTGCATACCATGTGGCAAGATGTTTGAAACTGAAAGTGCACTTTACCATCACTCAAGGAGTGTTCATCAACGAGAAAAGCCATTTGTTTGTGAAACTTGTGGTAAAAGATTCCATTCTAATGCTAGACTGAAAACTCACATGAATTTCCATACAGGAGATAGACCTTTCCCGTGCAAGATGTGTGACAAGAAGTTTATGGACAAGGATACTTTGATGAGTCACATGGTTGTGCATATGAATGTGAAGCCTTATCAATGTGAACATTGTGGTACTTATTGTGGTCGAAAACATTTACTCAAGAAGCATTTAGCATTATTCCATGGTGAACAGATTAATAAAAAACGCACTCCATCTCTTATTCACTATGAATGTAAAATTTGTCAGGAAACTTTTACCACATCATCAGAAGTTGTTCTGCATCGCACTCGACATTGGGTTGTTCAGGAAGGGCAAGCTGTAGACCCCAGCAAAGTACACATTTGTGAGTACTGTGGTGATGTATTCTCTCACGGAAATTCTTTGGGCAAACATAGAAGAGAAATGCACCCCGATGAGCAGCCTTATGTGTGTAGTATTTGTGGTTCTACTGCGGGCACTTTGTATGAGGCAAGAGAACATCGCAGGACTCATACCAATCAGGAAGATATATCTGAACCCGAAGTGGGAAAGAAAAAGCGCCGCAAACATTCTCTCATTCCTAAGCTCTACTTTTGTGATGAGTGTGGAAAAGGATTCATGTCCGAACGACCTTATCAAAAGCATTTACGGTCCCATCAAGCACGccaagagaaaaatcttatgtGCCAAGTTTGTCATAAAAAGTTTGCTGAAAAACAAAGACTTTTGGAGCACATGCAGATTCACACGGGTATCAAGCCTTACGAATGTTCTGTGTGTGGCCGTCGATTTTCCCAGACCAGTTCTATGTATACTCATGCTCTCatacacactggtgagaaaccccATTCTTGTGATTTGTGTGGTCGTGGGTTCCGAATCAAAGCAGATCGCGACAATCACCGACGCACTCATACCGGTGAGAAACCCTATAAGTGTGAATGGTGTGGTCAACAGTTCAGGACGGGACAGGTATATTATCAACATCGCATGATTCACACTGGAGAAAGAAGATTTCCTTGTGATGTTTGTGGGAAAGCATTCAAACGGTCGCACACACTAGTTGTTCACAAACGCATtcacacaggtgaaaagcctAATATATGTGACATATGTGGGAAATGCTTTAGGCAGAGGAGTGACATGAGGAAACACCGCAACCTCCACGGAACTACTCAATCATAA
Protein Sequence: MKVVLKSVSGESITVQVHAQDTVGDLKNRIQTQMGIPFDFNQLKIQGKPLTDDTLVVEYFSPAADKKTREPVPDQGRWDIPPLECAVPGCGNSKSSTPDRSFFRFPIHTANRCQHWVVACRRTDLIDKAPAFLNHHYAICSDHFALDQFTNASRKVLKRKAIPSIFTWHSEESNEFITPDALHSDSIQINESTPVMVKMEPVDVGTSSPITLLSADMPVVSMDVSGSVSAENIMGDIISDDEEDDDEGMDAEDEFELDDDSDTIHPGLLCRLCANTVSDPVYIFSENGKDLELAAKINICLPVTVKRTDPLPKQLCVDCKSKLDEYHEFAEVCVQAEEKLRLLTKKKNFKVLKRGTKETTGVVPNAHTPLHNENDQNGADENDLQSKSSKAPTSLRLVGSDYCCPLCVEGSMTQDVDSEPDVEFDGMHQKRELVRAFRRKARHLRNAPGLMPGMKIEDSEEEEEDFDEDDDSSETTEAEGDGEGSQEADGIIAELNTTAGVYATFVGNTDDLWNDDDDKSDLGTECSYPMSDSENLASIPEEMEIQMQLEDGRHEVIQIERDTICRHCGEPFPALEPALEHSKVHADVNSNPCALCDLAFESIEDLLEHFKEHREEELNRRRRALNRLQCETCGRRFNKETTMEKHQCAVVAKSKEKRAFRCLQCKKAYTSEDRLLFHQQFHDGAPANLCIPCGKMFETESALYHHSRSVHQREKPFVCETCGKRFHSNARLKTHMNFHTGDRPFPCKMCDKKFMDKDTLMSHMVVHMNVKPYQCEHCGTYCGRKHLLKKHLALFHGEQINKKRTPSLIHYECKICQETFTTSSEVVLHRTRHWVVQEGQAVDPSKVHICEYCGDVFSHGNSLGKHRREMHPDEQPYVCSICGSTAGTLYEAREHRRTHTNQEDISEPEVGKKKRRKHSLIPKLYFCDECGKGFMSERPYQKHLRSHQARQEKNLMCQVCHKKFAEKQRLLEHMQIHTGIKPYECSVCGRRFSQTSSMYTHALIHTGEKPHSCDLCGRGFRIKADRDNHRRTHTGEKPYKCEWCGQQFRTGQVYYQHRMIHTGERRFPCDVCGKAFKRSHTLVVHKRIHTGEKPNICDICGKCFRQRSDMRKHRNLHGTTQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733158; iTF_00732051; iTF_00731566; iTF_01434997; iTF_01435315;
90% Identity: iTF_00732051;
80% Identity: iTF_00733158;