Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010001440.1:444300-448934[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.5 3.9e+02 2.6 0.1 2 11 561 570 560 582 0.77

2 18 0.035 3 9.3 0.0 3 23 590 610 589 610 0.95

3 18 0.0064 0.55 11.6 1.4 2 21 626 645 625 646 0.94

4 18 0.15 13 7.3 2.3 1 23 657 679 657 679 0.91

5 18 0.032 2.8 9.4 0.5 6 23 690 708 690 708 0.96

6 18 0.00017 0.015 16.5 3.3 1 23 714 736 714 736 0.97

7 18 1.1e-05 0.00093 20.3 0.5 1 23 742 764 742 764 0.97

8 18 0.009 0.77 11.1 6.5 1 23 770 793 770 793 0.94

9 18 9.4e-05 0.0081 17.3 0.7 1 23 808 830 808 830 0.98

10 18 0.028 2.4 9.5 1.7 1 23 845 868 845 868 0.95

11 18 0.047 4 8.9 0.1 1 23 874 896 874 896 0.98

12 18 0.00022 0.019 16.2 0.7 1 23 922 944 922 944 0.98

13 18 0.0021 0.18 13.1 1.5 2 23 953 974 952 974 0.96

14 18 0.00011 0.0095 17.1 0.5 1 23 980 1002 980 1002 0.97

15 18 0.01 0.85 11.0 1.6 1 23 1008 1030 1008 1030 0.97

16 18 0.019 1.7 10.1 0.8 1 23 1036 1058 1036 1058 0.96

17 18 1.6e-06 0.00014 22.9 0.9 1 23 1064 1086 1064 1086 0.98

18 18 7.7e-06 0.00067 20.7 3.4 2 23 1093 1114 1093 1114 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.5	3.9e+02	2.6	0.1	2	11	561	570	560	582	0.77
2	18	0.035	3	9.3	0.0	3	23	590	610	589	610	0.95
3	18	0.0064	0.55	11.6	1.4	2	21	626	645	625	646	0.94
4	18	0.15	13	7.3	2.3	1	23	657	679	657	679	0.91
5	18	0.032	2.8	9.4	0.5	6	23	690	708	690	708	0.96
6	18	0.00017	0.015	16.5	3.3	1	23	714	736	714	736	0.97
7	18	1.1e-05	0.00093	20.3	0.5	1	23	742	764	742	764	0.97
8	18	0.009	0.77	11.1	6.5	1	23	770	793	770	793	0.94
9	18	9.4e-05	0.0081	17.3	0.7	1	23	808	830	808	830	0.98
10	18	0.028	2.4	9.5	1.7	1	23	845	868	845	868	0.95
11	18	0.047	4	8.9	0.1	1	23	874	896	874	896	0.98
12	18	0.00022	0.019	16.2	0.7	1	23	922	944	922	944	0.98
13	18	0.0021	0.18	13.1	1.5	2	23	953	974	952	974	0.96
14	18	0.00011	0.0095	17.1	0.5	1	23	980	1002	980	1002	0.97
15	18	0.01	0.85	11.0	1.6	1	23	1008	1030	1008	1030	0.97
16	18	0.019	1.7	10.1	0.8	1	23	1036	1058	1036	1058	0.96
17	18	1.6e-06	0.00014	22.9	0.9	1	23	1064	1086	1064	1086	0.98
18	18	7.7e-06	0.00067	20.7	3.4	2	23	1093	1114	1093	1114	0.96

Sequence Information

Coding Sequence: ATGAAGGTTGTTTTGAAGAGTGTATCTGGAGAATCTATAACAGTTCAGGTGCACGCTCAGGATACAGTGGGCGATTTAAAGAATCGCATTCAAACTCAGATGGGTATTCCATTTGACTTCAACCAATTGAAGATTCAAGGAAAACCTTTAACTGATGATACATTAGTTGTTGAATATTTTTCTCCAGCCTCTGACAAAAAGACTCGTGAGCCTGTATCTGACCAGGGAAGATGGGACATTCCACCATTGGAGTGTGCTGTTCCAGGTTGTGGAAATTCTAAATCATCCTCACCAGATCGATCATTTTTCCGTTTTCCAATTCATACTGCTAATAGATGCCAACACTGGGTTGTAGCATGCAGGAGAACAGATCTGATTGATAAAGCCCCTGCATTTTTGAATCATCATTACGCCATCTGCTCTGACCACTTTGCCCTGGATCAGTTTACAAATGCATCCCGGAAAGTATTGAAGCGGAAAGCTGTCCCTAGCATCTTCACTTGGCACACTGAAGATAGTTCTGAATTCATAACCCCAGATGTTCTTCAGCCTGACACTATGCAAATCAACGAATCAACACCAGTTATGGTTAAAATGGAGCCTTCTGATGTAAGCACTTCCTCTCCAATAACATTGCTCTCAGGTGATATGCCAGTGGTCAGTATGGATGTCTCGGGTTCTGTGACTACTGAAAACATGATGGGTGACATCATaagtgatgatgaagatgatgatgatgatggaatAGATGCAGAGGACGAGTTTGAATTGGAAGATGATTCGGACATTGTACATCCTGGCCTCTTGTGCCGGCTTTGTGCCAACTCCGTTACTGATCCTGTCTATATATTCAGTGAAAATGGAAAAGACTTAGAGCTTGCAGCCAAAATCAACATCTGTCTACCTATTACTGTCAAAAGAACTGATCCCTTGCCAAAACAGTTGTGCGTTGACTGCAAATCGAAATTGGATGAATACCATGAGTTTGCTGAAGTATGCGTTCAGGCCGAGGAGAAACTTCGACTTCTGACCAAGAAAAAGAACTTTAAAGTACTGAAGCGTGGTACCAAAGAATCTACGGGTGTTTTGCCAAATGCAGAGGCCCATGTAATTGCTGCTGACCAAAATGGTGCAGAGGAGAATGGTTTGAAACCATCTAAAGCTCTGAATCCTTTGAAACTGGTGGGTTCTGAATACTGTTGTCCTCTTTGTGTGGAAGGAAGCATGACTCAAGATGTTGATTCTGAACCTGATGTTGAGTTTGATGGCATGCATCAGAAAAGAGAGTTGGTGCGAGCATTCAGAAGGAAAGCCCGACATCTAAGAAATGTACCTGGTCTCATGCCTGGCATGAAAGCCGAAGACTCAGCCTCAGAAGAAGAGGAttttgatgaagatgatgactcCTCTGAGACTACTGAGGCAGAAGGAGATGGTGAGGGAAGTCAAGAAGCAGATGGTATAATTGCTGAGCTAAATTCAACAGCTGGTGTATATGCCACTTTTGTTGGCAATACAGATGAACTGTGGAATGAGGATGATGACAAgTCTGATTTGGGTACAGAATGCAGTTATCCAATGAGTGAATCAGAAAATTTGGCTTCAATACCTGAAGAAATGGAAATTCAGATGCAACTTGAAGATGGACGCCATGAAGTTATTCAAATTGAAAGGGACACTGTTTGTCGGCATTGTGGTGAACCTTTTCCAGCTCTCGAACCTGCATTAGAACATTCAAAGGTACATGCTGATGTGGATGGCAATCCCTGTGCTCTGTGTGACCTGGCTTTTGAAAGTGCTGATGATCTCCTTGAGCACTTCAAGGAGCACCGTGAAGAGGAATTAAACAGGAGACGACGTGCTCTTAACCGTCTACAATGTGAAACTTGTGGACGGCGATTCAACAAGGAAACAACCATGGAAAAACATCAGTGTGCTGTAGTTGCAAAGAGCAAGGAAAAGAGAGCATTCAGATGCCTGCAATGCAAAAAAGCTTTCACATCAGAAGATAGACTTTTATTCCATCAGCAGTTTCATGATGGTGCACCAGTAAATCTCTGCATACCATGTGGCAAGATGTTTGAAACAGAAAGTGCCCTTTATCATCACTCACGCAATGTTCATCAACGAGAAAAGCCATTTGTTTGTGAAACCTGTGGTAAAAGATTCCATTCAAATGCAAGACTCAAGACCCACATGAATTTCCATACAGGAGATCGACCTTTTCCTTGCAAGATGTGTGACAAAAAGTTTATGGACAAGGATACTCTGATGAGTCACATGGTTGTACACATGAATGTGAAGCCTTACCAATGTGAACATTGTGGCACTTATTGTGGTCGAAAGCATTTGCTTAAAAAGCACCTAGCTCTGTTCCATGGcgaacaaataaataaaaaacgtACTCCATCTCTTATTCACTATGAATGCAAAATTTGTCAAGAGACATTTACTACATCATCTGAAGTTGTTCTCCATCGCACCAGACACTGGGTTGTTCAGGAAGGACAAGCTGTGGACCCAAGCAAAGTACATATCTGTGAGTACTGTGGTGACGTATTTTCACACGGAAATTCCCTTGGCAAACATAGAAGAGAGATGCACCCAGATGAGCAACCATATGTGTGCAGTATTTGTGGTTCTACAGCTGGCACTTTGTATGAAGCAAGAGAACATCGAAGGACCCACACCAACCAAGAAGATATTTCTGAACCGGAAGTTGGCAAGAAAAAGCGCCGCAAACACTCGCTCATCCCTAAACTCTATTTTTGTGATGAGTGTGGAAAAGGATTTATGTCGGAGAGACCATATCAGAAGCACCTAAGGTCTCATCAAGCCCGTCAGGAGAAAAATCTAATGTGCCAAGTTTGTCACAAGAAGTTTGCTGAAAAGCAGAGACTATTGGAACATATGCAGATTCATACTGGTATCAAGCCTTATGAATGCTCCGTGTGTGGCCGTCGATTTTCCCAAACCAGCTCCATGTACACTCATGCTCTTATACACACGGGTGAGAAGCCCCATTCTTGTGATTTGTGTGGTCGAGGTTTCAGAATTAAAGCAGACCGTGACAACCACCGTCGTACTCACACTGGTGAGAAACCTTACAAATGCGAGTGGTGCGGTCAGCAATTTAGGACAGGACAGGTCTACTATCAACATCGTATGATTCATACTGGAGAAAGACGATTCCCGTGTGATGTGTGTGGAAAAGCATTCAAACGATCTCATACATTGGTTGTTCACAAACGCATCCACACTGGCGAAAAGCCCAATGTATGTGACATTTGTGGCAAATGTTTTAGACAAAGAAGTGACATGAGAAAACACAGAAATCTTCATGGCACTACTCAACCATAA
Protein Sequence: MKVVLKSVSGESITVQVHAQDTVGDLKNRIQTQMGIPFDFNQLKIQGKPLTDDTLVVEYFSPASDKKTREPVSDQGRWDIPPLECAVPGCGNSKSSSPDRSFFRFPIHTANRCQHWVVACRRTDLIDKAPAFLNHHYAICSDHFALDQFTNASRKVLKRKAVPSIFTWHTEDSSEFITPDVLQPDTMQINESTPVMVKMEPSDVSTSSPITLLSGDMPVVSMDVSGSVTTENMMGDIISDDEDDDDDGIDAEDEFELEDDSDIVHPGLLCRLCANSVTDPVYIFSENGKDLELAAKINICLPITVKRTDPLPKQLCVDCKSKLDEYHEFAEVCVQAEEKLRLLTKKKNFKVLKRGTKESTGVLPNAEAHVIAADQNGAEENGLKPSKALNPLKLVGSEYCCPLCVEGSMTQDVDSEPDVEFDGMHQKRELVRAFRRKARHLRNVPGLMPGMKAEDSASEEEDFDEDDDSSETTEAEGDGEGSQEADGIIAELNSTAGVYATFVGNTDELWNEDDDKSDLGTECSYPMSESENLASIPEEMEIQMQLEDGRHEVIQIERDTVCRHCGEPFPALEPALEHSKVHADVDGNPCALCDLAFESADDLLEHFKEHREEELNRRRRALNRLQCETCGRRFNKETTMEKHQCAVVAKSKEKRAFRCLQCKKAFTSEDRLLFHQQFHDGAPVNLCIPCGKMFETESALYHHSRNVHQREKPFVCETCGKRFHSNARLKTHMNFHTGDRPFPCKMCDKKFMDKDTLMSHMVVHMNVKPYQCEHCGTYCGRKHLLKKHLALFHGEQINKKRTPSLIHYECKICQETFTTSSEVVLHRTRHWVVQEGQAVDPSKVHICEYCGDVFSHGNSLGKHRREMHPDEQPYVCSICGSTAGTLYEAREHRRTHTNQEDISEPEVGKKKRRKHSLIPKLYFCDECGKGFMSERPYQKHLRSHQARQEKNLMCQVCHKKFAEKQRLLEHMQIHTGIKPYECSVCGRRFSQTSSMYTHALIHTGEKPHSCDLCGRGFRIKADRDNHRRTHTGEKPYKCEWCGQQFRTGQVYYQHRMIHTGERRFPCDVCGKAFKRSHTLVVHKRIHTGEKPNVCDICGKCFRQRSDMRKHRNLHGTTQP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733387;
90% Identity: iTF_00731566; iTF_00733387; iTF_00733158;
80% Identity: iTF_00731566;