Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763087.1:595172-600260[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 7.7 4.2e+02 1.6 2.3 1 23 359 383 359 383 0.84

2 19 0.76 41 4.8 0.5 1 19 420 438 420 441 0.79

3 19 0.54 29 5.2 1.3 2 23 449 470 448 470 0.89

4 19 0.0021 0.12 12.8 0.1 2 23 478 500 477 500 0.94

5 19 3.3e-05 0.0018 18.5 0.1 2 23 506 528 505 528 0.95

6 19 0.0001 0.0056 17.0 5.0 1 23 538 560 538 560 0.98

7 19 7.3e-05 0.004 17.4 1.4 1 23 566 588 566 588 0.98

8 19 0.79 43 4.7 0.0 1 19 597 615 597 621 0.84

9 19 0.0065 0.36 11.3 1.3 1 20 632 651 632 654 0.93

10 19 0.013 0.7 10.4 4.5 1 23 660 682 660 682 0.98

11 19 7.9e-05 0.0043 17.3 1.5 1 23 701 724 701 724 0.95

12 19 0.0066 0.36 11.3 0.7 2 23 732 754 731 754 0.95

13 19 0.071 3.9 8.0 4.5 2 23 769 791 768 791 0.95

14 19 7.2e-08 3.9e-06 26.9 0.9 1 23 804 826 804 826 0.99

15 19 0.0014 0.075 13.4 3.0 1 23 832 855 832 855 0.97

16 19 0.0033 0.18 12.2 3.6 1 23 861 883 861 883 0.97

17 19 4.5e-05 0.0025 18.1 2.3 1 23 889 911 889 911 0.98

18 19 6.8e-05 0.0037 17.5 1.5 1 23 917 939 917 939 0.97

19 19 1.2e-05 0.00068 19.8 2.6 1 23 945 968 945 968 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	7.7	4.2e+02	1.6	2.3	1	23	359	383	359	383	0.84
2	19	0.76	41	4.8	0.5	1	19	420	438	420	441	0.79
3	19	0.54	29	5.2	1.3	2	23	449	470	448	470	0.89
4	19	0.0021	0.12	12.8	0.1	2	23	478	500	477	500	0.94
5	19	3.3e-05	0.0018	18.5	0.1	2	23	506	528	505	528	0.95
6	19	0.0001	0.0056	17.0	5.0	1	23	538	560	538	560	0.98
7	19	7.3e-05	0.004	17.4	1.4	1	23	566	588	566	588	0.98
8	19	0.79	43	4.7	0.0	1	19	597	615	597	621	0.84
9	19	0.0065	0.36	11.3	1.3	1	20	632	651	632	654	0.93
10	19	0.013	0.7	10.4	4.5	1	23	660	682	660	682	0.98
11	19	7.9e-05	0.0043	17.3	1.5	1	23	701	724	701	724	0.95
12	19	0.0066	0.36	11.3	0.7	2	23	732	754	731	754	0.95
13	19	0.071	3.9	8.0	4.5	2	23	769	791	768	791	0.95
14	19	7.2e-08	3.9e-06	26.9	0.9	1	23	804	826	804	826	0.99
15	19	0.0014	0.075	13.4	3.0	1	23	832	855	832	855	0.97
16	19	0.0033	0.18	12.2	3.6	1	23	861	883	861	883	0.97
17	19	4.5e-05	0.0025	18.1	2.3	1	23	889	911	889	911	0.98
18	19	6.8e-05	0.0037	17.5	1.5	1	23	917	939	917	939	0.97
19	19	1.2e-05	0.00068	19.8	2.6	1	23	945	968	945	968	0.98

Sequence Information

Coding Sequence: atgacaCTGTATTTTACTCCATCCCCAACCTCCAACCTGTATAGCGATACAAAAACTCTTAGAACAATGGACTCGTTCAATGATCACCCAGGTCGGTTATGTAGACTTTGTGCTCAGCCTGAAACTGAGGATAAGCTAATATATATTtacaaagaaaatgaagaagtTGAGGATCACCTTGCAGAGATTATAAACCTGAGTCTACCTATCAAGGTTTCACAGATTGACCATTTACCCAAGCAAATTTGTCAGTCTTGTCTGGAAAAATTACAAGCGACTCACGAGTTTGCCTTGAGCTGTCTTGCCACCGAACAGGAACTTCAAGAGCTTTTCGCAGCAAACAAGTTTCAATCAGTGGGCGATTCATCTGACAACTCCTTAGGAGATACATTAAAGGACAAAATTGATTTAAAGCTTTCCACTTCAACTTCAGCTGCCTTATGTGAAAAATCGACCGACAACTTGAGTGACTTGGAAGAGGGAAAACTGGAAGAATTTATGAGCCCTCTTCAATGTAGGTCTTCAGAAAGTTATCAATGCCCTCTCTGTTGTGATGGTGAAATGGGCTCATGTCTGGATGAACCTGTTGAGCTAGGTGTTCAAAATCACATATCTCCTCAAAAATCTTTCGAAGAAGAGCTCATGGCACAGTACAATCGAGCAAATGAAGAAGATGATTCTAGCTCATCTGTTGTTGAAGAGGATCTAGAATCAGAATTGGAATCTATCACTGAAGTGGTAGTAGATGAAAACATAGACCAAAGAGATGCTGCCATCAGTATTGGCAATAATTCTTCTGCTGGCCCAGCGAAAAAATTGAGGCAACTGAAAGGGATTCCGAAACACCGACAAATAAGAAGGCAGAAGCACAGAGTAACAGCTGCTCGTGGGAAAAGAAAGGTACAAGGGAAGGCTGAGGAAAGTGATGCCCTGATTTGGATCAAAGCTGATAATGAGGAGTCTATACCACTAGTTCAGTGTATACACTGCAgtgggtggttgccaggatatGCTTCTTGTCTACAGCACTCTCTGACCAGTCATATAGATGTTGATGCAGCAGATCAGAAAACATATCATTGTGCACGATGTGAAGGAGTATCAGTTTCAACTCATTCTGATCTTATAAATCATTTTAAGAAGTCCCACTGTCCTAACCATGAGTTTGAAGTGGAGGAGTGTAATGGGCAGTTTGTAGTTTCTGACAAAAGTCAATCAAAGGCTTTATCTGAGGCTAGTGTACCTAGAGATATAACTTATAACTGCAGCATTTGTGAGAAAGGCTTCAATTGGCTTTTAAATCTCCTTCAACATTCTTGTTCACAAGTAAACTGTAATGACTTGTATTGCAATATTTGTGATCAAGAGTATCGCAATCGTCAACGGTTTGTGTTCCATATGAATTTCCACAGCGATATAGCGCCTGCATTGATGTGTGATGTTTGTGACCAGTCCTTTGCTGATGATTCTTTACTATATGATCATGTACGTTTTGCACATGTGACTGAAAATGTCGAGTGTAGTGAGTGTGGAAAGGATTTTAGATCTGAAAAAGGTCTTACTGCCCACCAAATGCTTGCACACAACTCTGATCCTACCATGCAAAATAGACATAAGTGTACTACATGTGGAAAATGTTATAGAGACAAACAGGGACTCAAAGAACATTTAGTTACACACATGAGTGAAAAACCATTTCCCTGTGACAAATGTGACCGGGCCTATAACCGATACTCACGCCTCAAGCAACATCAACTTTCTCATGTTTATACAGAGTCTATGGAATGTTATGAATGTGTTAATTGTGGTTTAGCCTTTCCCGATATGGATAAAGCACTGGCACATTCAACTTCTGAGGAGCATGAGGTCCAAAATACTGTTCTGGCTAAACTGTACAGGTGTGAATACTGTGACACAGTATTTTCTTGTCCGGATGGCCTTAACCAACACCGCCCATCTCATGTAGGAGAAAAACCATTTGTTTGTCACATTTGTGGAGCATCATTTCATACTTATTCAAGAGTCACAACGCACAAAACCACGCATGGCATATATGACCAGATAGAGCCACAAGAAGGTGACTTCACTATCCCCCGGCATTTTCTGTGTGAGCACTGTGGTGTGAGCTATCCCTACTGGAGCTATCTTCAAACTCATCGCAAGATGCGGCATAGTGAAAACCCTTATTCTTTAAGTTGTAAACTTTGCCCTGAAAAGTTTAAAAACTCTTGGAGTGTTGTCTACCACCGTAAGAAAGTGCATGAAAACAATGGAGAGACAAAAGAATGGCGAAAACGTACTTTACAGTGCCCTCACTGTGGTGTGAACTGCATGTACCAACACACATTAAGCATGCACATAGAACGGAAACATGGCTCATTATTAGATGATGATGGAAAACGAGAGAGTTACCAGTGTGAAGAATGTGGTAAAGTTTTCAAGTACCAGTCCTCCCTTCTGCTGCACCAAAAAATGCATCAAGGTCAAAAAAGTTTTCAGTGTGAGGAATGTGATAAATCATTTCTTACTATTGCTACTCTGCGTAATCACACCAAAAGATGCCATCAGGGTATAAAACCACACCAATGTGAATATTGTGGAAAAGCATTCTTTCACAGAGTTACCCGTGATGATCACTTGCGAGTGCATACAGGTGAAAAACCTTTCAAGTGTCAATTCTGTGATAAAAGATTCCGCTTGAAGTCTATGCTAACAGACCATGCCAAAATCCATAATGATCATCGCCCGTACCCATGTGATGTCTGTGGGACATCTTTCAGGCGCATGGTTCACATGAAACAGCACCGTATGCTACATACCGGTGAAAAGCCTTTCCAATGTAGGTACTGCGGTCAAGATTTTCGTTTAAAGCAGGAACTTCAACGCCACATGAAATCAAAGCATGGGGAACTAGCTGTGGAGAATATTGAGGAAGAGGAATATATCTTTGCAGACCAGTAA
Protein Sequence: MTLYFTPSPTSNLYSDTKTLRTMDSFNDHPGRLCRLCAQPETEDKLIYIYKENEEVEDHLAEIINLSLPIKVSQIDHLPKQICQSCLEKLQATHEFALSCLATEQELQELFAANKFQSVGDSSDNSLGDTLKDKIDLKLSTSTSAALCEKSTDNLSDLEEGKLEEFMSPLQCRSSESYQCPLCCDGEMGSCLDEPVELGVQNHISPQKSFEEELMAQYNRANEEDDSSSSVVEEDLESELESITEVVVDENIDQRDAAISIGNNSSAGPAKKLRQLKGIPKHRQIRRQKHRVTAARGKRKVQGKAEESDALIWIKADNEESIPLVQCIHCSGWLPGYASCLQHSLTSHIDVDAADQKTYHCARCEGVSVSTHSDLINHFKKSHCPNHEFEVEECNGQFVVSDKSQSKALSEASVPRDITYNCSICEKGFNWLLNLLQHSCSQVNCNDLYCNICDQEYRNRQRFVFHMNFHSDIAPALMCDVCDQSFADDSLLYDHVRFAHVTENVECSECGKDFRSEKGLTAHQMLAHNSDPTMQNRHKCTTCGKCYRDKQGLKEHLVTHMSEKPFPCDKCDRAYNRYSRLKQHQLSHVYTESMECYECVNCGLAFPDMDKALAHSTSEEHEVQNTVLAKLYRCEYCDTVFSCPDGLNQHRPSHVGEKPFVCHICGASFHTYSRVTTHKTTHGIYDQIEPQEGDFTIPRHFLCEHCGVSYPYWSYLQTHRKMRHSENPYSLSCKLCPEKFKNSWSVVYHRKKVHENNGETKEWRKRTLQCPHCGVNCMYQHTLSMHIERKHGSLLDDDGKRESYQCEECGKVFKYQSSLLLHQKMHQGQKSFQCEECDKSFLTIATLRNHTKRCHQGIKPHQCEYCGKAFFHRVTRDDHLRVHTGEKPFKCQFCDKRFRLKSMLTDHAKIHNDHRPYPCDVCGTSFRRMVHMKQHRMLHTGEKPFQCRYCGQDFRLKQELQRHMKSKHGELAVENIEEEEYIFADQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732047;
90% Identity: -
80% Identity: -