Ffus025170.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001411.1:5117678-5121811[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.6 8.3e+02 1.6 2.4 1 23 332 356 332 356 0.84 2 19 0.72 62 5.1 1.1 1 19 393 411 393 414 0.83 3 19 2.6 2.3e+02 3.3 2.4 2 23 422 443 421 443 0.83 4 19 0.034 2.9 9.3 0.0 2 23 451 473 450 473 0.93 5 19 3.2e-05 0.0028 18.8 0.1 2 23 479 501 478 501 0.96 6 19 3.5e-05 0.003 18.7 4.3 1 23 511 533 511 533 0.98 7 19 8.5e-05 0.0073 17.5 1.4 1 23 539 561 539 561 0.98 8 19 0.31 26 6.3 0.0 1 19 570 588 570 594 0.81 9 19 0.033 2.8 9.3 0.9 2 20 606 624 605 627 0.91 10 19 0.0028 0.24 12.7 1.6 1 23 633 655 633 655 0.97 11 19 9.2e-05 0.0079 17.4 1.5 1 23 674 697 674 697 0.95 12 19 0.0077 0.67 11.3 0.7 2 23 705 727 704 727 0.95 13 19 0.034 2.9 9.3 3.8 2 23 742 764 741 764 0.95 14 19 5.3e-08 4.6e-06 27.6 1.0 1 23 777 799 777 799 0.99 15 19 0.0016 0.14 13.5 3.0 1 23 805 828 805 828 0.97 16 19 0.02 1.7 10.0 3.7 1 23 834 856 834 856 0.97 17 19 2.1e-05 0.0018 19.4 2.0 1 23 862 884 862 884 0.98 18 19 7.1e-05 0.0061 17.7 1.5 1 23 890 912 890 912 0.97 19 19 1.5e-05 0.0012 19.9 2.6 1 23 918 941 918 941 0.98
Sequence Information
- Coding Sequence
- ATGGACACTTTGAGTAGTCATCCAGGTCGACTATGTAGACTTTGCGCTCACTCTGAAATGGAAGATAAATTGACATACATTTACACTGAAGGAGAAAGTGAAGAACAACTTGCAGAGATAATAAACATGAGCCTGCCAATCAAGGTCTCACAGATTGACCATTTACCGAAGCAAATTTGTCAGTCGTGTTTGGAAAAAGTGCAAGCAACCCATGAGTTTGCTCTCAGTTGTCTTACATCAGAACAGGAACTGCTGGAGCTCTTTTCAGCCGACAAGTTTCAATCAATTACTTCTCATTCCGAGAATTTTATTGGAGGCACATTACAGGACAAAATCGATATAAACCTTCCTATATCATCTTCTGATGCATCAAAGGTATTAAGTGGTCCTAAGGAACAACACTTGGGTGAGTTGATGAACACTGGGAAGTGTGAGTCATCAAATAGTTATCGATGTCCCCTGTGCTGTGAGGGTGAAATGGGATCATGCTTCGATGAGCCTGTTGAGCTGCGTGTTGTAAATCATCTTCATCCTTTCAAGTCTTTTGAGGATGAGCTCATGGCACAGTATAAGCAAGCAAATGAGGAAGATGATTCCAGTTCATCTGTTGTGGAAGAGGATCCTGAACCGGAATTTGATTCTGTAACTGAGGTTGCACCAGATGAGATTACAGATCAACAAAACCATGCCAGCATTGATATTGGCAATAGCTCTTCTGAAAGCTCAgccaaaaaactgaaaattgtAACAACAAGttccaaaaaaaggaaaaacaaaaagctGAAGCATAGAGTTTCAGCTGCCCGTGGGAGGAAAAAAGTACAAGGAAAACCTGACGAAAATGATGCTCTAATTTGGATCAAAGCTGACAATGAAGAGTCCATACCACTTGTTCAATGTTTACACTGTAGTGGATGGTTGCCAGGATATGCGTCTTGCCTACAGCATTCTTTGACCAGTCATATAGATATAGATGAAACTGATCAGAAAACATATCATTGTGCACGGTGTGAAGGAGTTTCAGTATCAACTCATTCTGATCTTATAAATCATTTCAAGAAAACCCACTGTCCTAACCATGAATTTGATGTGGAGGAATATAATGGTCAGTTTGTTGTTTCTGACAAAAGTAAACTAAATTTTTCGTCAGAGGCTACTGTTGCAAGAGATGTAACTTATCACTGCAGTATTTGTGAGAAAGGCTTCAGTTGGTTATTAAACCTTTTGCAACACTCTTGCAACCAAGTGAACTGCAATGACTTGTACTGCAATATTTGTGACCAGGAGTATCGCAATCGACAACGATTTGTGTTTCACATGCATTTTCATAGTGAGAAAGCACCAGCATTAATCTGTGATGTATGTGAACAGCCCTTTGCTGATGATTCCTTGCTTTATGATCATGTAAGATTTGCTCATTTGTCAGAAAATGTCAAATGTAGCGAATGTGGAAAAGATTTTAGATCTGAAAAGGGTCTGGCTGCACACCAAATGATTGCACACAATTCTGACCCCTCCATACAGAATAGACACAAATGTACTGAATGTGGGAAATGTTACAGAGACAAACAGGGGCTTAAAGAACATTTAGTTACTCACATGAGCGTAAAACCCTTTCCGTGTGACAAATGTGATCGAGCTTACAACCGCTATTCTCGTCTTAAGCAACATCAACTTTCTCATGTTTATTCTGAGTCTATGGAATGTTATGAGTGTGCTGATTGCGGTTTAGCTTTTCCTGACGTGGACAAAGCAGTATCACACTCAAACTCTGAGGAGCATGAGATTCAGCGCACTGTTCTGTCGAAATTACTCAGGTGTGAGTACTGTGATACAGTATTTTCTTGTCCAGATGGGCTTAATCAACACCGCCCTTCCCATGTGGGAGAGAAACCATTTGTTTGTCACATCTGTGGAGCATCATTTAACTCCTATGCAAGAGTAACAACTCACAAAACCACACATGGCGTTTATGATCAAATAGAGCCACAGGAAGGTGATTTCACCATCCCTCGACATTTCTTGTGTGAGCATTGTGGTGTGAGCTATCCTTACTGGAGCTATCTTCAAACTCATCGTAAGATGCGGCACAGTGAGAACCCTTACTCCTTAAGTTGTAAACTTTGCCCAGAAAAGTTCAAAAACTCCTGGAGCGTTGTCTATCATCGTAAAAAAGTACATGAGAACAATGGAGAAACCAAAGAATGGCGGAAACGCTCCTTGCAGTGCCCACACTGTGGTGTGAATTGTATGTACCAACACACATTAATCATGCATATAGAAAGGAAACATGGTTCATTACAAGATGATGATGGAAAACGTGAGAGTTATCAGTGCGAGGAATGTGGCAAAGTTTTTAAGTATCAGTCGTCTCTAATGCTCCACCAAAAAATGCATCAAGGTAAAAAGAGCTTCCAGTGTGAGGAATGTGATAAGTCATTTCTTACTATAGCTACTTTGCGAAATCACACAAAAAGATGCCATCAAGGAATCAAACCTCACCAGTGTGAATTTTGTGGGAAAGCATTCTTTCATAGAGTAACTCGTGATGATCACTTGAGAGTTCATACTGGTGAAAAACCATTCAAATGCCAGTTCTGTGACAAAAGTTTCCGTTTAAAATCTATGTTAACAGATCATGCAAAAATTCACAATGATCATCGCCCGTACCCGTGTGACGTTTGTGGCCAATCTTTTAGGCGCATGGTCCACATGAAACAACACCGCATGCTGCATACAGGTGAAAAACCATTCCAATGCAGATATTGTGGTCAAGATTTCCGTTTAAAGCAAGAACTTCAGCGTCATATGAAGTCCAAGCACGGAGACTTGACTCTGGAAAATATTGAGGAAGAGGAATTCATCTTTGCAGAATAG
- Protein Sequence
- MDTLSSHPGRLCRLCAHSEMEDKLTYIYTEGESEEQLAEIINMSLPIKVSQIDHLPKQICQSCLEKVQATHEFALSCLTSEQELLELFSADKFQSITSHSENFIGGTLQDKIDINLPISSSDASKVLSGPKEQHLGELMNTGKCESSNSYRCPLCCEGEMGSCFDEPVELRVVNHLHPFKSFEDELMAQYKQANEEDDSSSSVVEEDPEPEFDSVTEVAPDEITDQQNHASIDIGNSSSESSAKKLKIVTTSSKKRKNKKLKHRVSAARGRKKVQGKPDENDALIWIKADNEESIPLVQCLHCSGWLPGYASCLQHSLTSHIDIDETDQKTYHCARCEGVSVSTHSDLINHFKKTHCPNHEFDVEEYNGQFVVSDKSKLNFSSEATVARDVTYHCSICEKGFSWLLNLLQHSCNQVNCNDLYCNICDQEYRNRQRFVFHMHFHSEKAPALICDVCEQPFADDSLLYDHVRFAHLSENVKCSECGKDFRSEKGLAAHQMIAHNSDPSIQNRHKCTECGKCYRDKQGLKEHLVTHMSVKPFPCDKCDRAYNRYSRLKQHQLSHVYSESMECYECADCGLAFPDVDKAVSHSNSEEHEIQRTVLSKLLRCEYCDTVFSCPDGLNQHRPSHVGEKPFVCHICGASFNSYARVTTHKTTHGVYDQIEPQEGDFTIPRHFLCEHCGVSYPYWSYLQTHRKMRHSENPYSLSCKLCPEKFKNSWSVVYHRKKVHENNGETKEWRKRSLQCPHCGVNCMYQHTLIMHIERKHGSLQDDDGKRESYQCEECGKVFKYQSSLMLHQKMHQGKKSFQCEECDKSFLTIATLRNHTKRCHQGIKPHQCEFCGKAFFHRVTRDDHLRVHTGEKPFKCQFCDKSFRLKSMLTDHAKIHNDHRPYPCDVCGQSFRRMVHMKQHRMLHTGEKPFQCRYCGQDFRLKQELQRHMKSKHGDLTLENIEEEEFIFAE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733381;
- 90% Identity
- -
- 80% Identity
- -