Focc005685.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
-
Assembly
None
Location
ML762997.1:789092-795301[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.23 13 6.4 0.8 2 19 380 397 379 402 0.89
2 13 0.0078 0.42 11.0 0.8 1 23 421 443 421 443 0.98
3 13 0.00042 0.023 15.1 1.0 1 23 448 471 448 471 0.93
4 13 7.9e-06 0.00043 20.5 2.4 1 23 487 509 487 509 0.97
5 13 5e-05 0.0027 17.9 0.3 3 23 517 537 516 537 0.98
6 13 1.2e-06 6.4e-05 23.1 0.4 1 23 543 565 543 565 0.97
7 13 0.00012 0.0064 16.8 3.0 1 23 571 593 571 593 0.97
8 13 0.00015 0.0084 16.4 3.4 1 23 599 621 599 621 0.98
9 13 0.00069 0.038 14.4 1.3 1 23 633 655 633 655 0.97
10 13 0.00027 0.015 15.6 0.1 1 23 662 684 662 684 0.97
11 13 1.3e-06 7.1e-05 22.9 1.0 1 23 690 713 690 713 0.96
12 13 1.6e-05 0.00088 19.5 1.1 3 23 721 741 719 741 0.98
13 13 3.3e-05 0.0018 18.5 0.5 3 23 749 769 748 769 0.99

Sequence Information

Coding Sequence
ATGCCGACCTCCCGGATATTTTGTTTAGCGAAATCTTGCTACAACTATCAACCTTCCCCAGGATCACCTGCCTTTTTTAACCTACCCAGTGACTTGGAAAGTCGTGTAAAGTGGGTAGAGAATGCGGGACGGTCGGATTTGAAAGAGAAGACTGTTTCTACCCTGTCTGGAAAGTATTACATATGTGCAGATCACTTTGAACCTTATTGTTTCATCGACCCAGCTAAGAGATCACTTCTGAGGAGAGATGTTGATGTTCTCCccacaaattttaaaagcaatTTAGCCTCCTTAGCCAGTATGGATGACAATAAAAGCTTCCGTGACAGTCAAAGTACCTTAGCCGGAACGGTATTGGCTGAAGTTGAGTCGGCACAAGAGATTTTAAATGCTGCAGTTGTATCAGAAGATGTTTTAGATGGTGCAGAATGGACAAACATTGTAGCAGTAAGCTTAAGTGATGATGGTAGTCTCATGTGCAACACATTGAATTCTCCATCTCAGGAATTGACCGAGCACAGCGTAAGCTTTAATTCAGGAAATAATGCAGACTCCAATGAAATGGTTATGGAGTGTCTGATGCTCTGTCGTCTTTGTGCTGCTCTTGTTCAAGTCAATATGCTTGTTTCAATATTTGGTGATGAGTCAGATAAGGAAATAAAGGATATGATTGATCAGATCATACCTGGCCAAGTCATGATGGATGATGGTTTACCTCAGCGAGTTTGCACAAGTTGTGTTGAAAGAGTAAGAAATTGTTGTGAAATAGTTGATTCGTTTAAGGCAGCGGATTCTCGCCTGCGACAAATGGTTGAGTTATGTAACTTAGATGATACAAATGGGAGTCTTACTTTACAAGACAATGGTAGTCTGCCTATAATACTTCAAACTGTTGATGAGTCTCCAGAAGTAGAGTTGGATGGTATCAATACTAACATAACTTCACACTTCTCGGAAGATCAAACAACTTTAGATGGCTTTGTCTCTGATTCCATGCAGCTTAACTCAAGAAATGTGAAGGAAGAGGCATCAGTAACAAATTTACCCACTTCAGAGTGCATTACCATTGGTGATACAATCAACTTCAATGTGCAAGTAGATGGAAATAGTTTAAGTTTCCAGGGCACCGAACATATTAAATGTGGAGTTTGCCATCAAGAGTTTGAGGAACCAGCTGATCTCGTTTCACATTGTATGAATTATCATTCCATAAAAATTGATGATGGGTCTGTCTTTCCCACTGAGGATATTAGCAATGCTTTTCAGTGCACAATTTGTGATCATATTTTGCCGAATGGGAACTTTTTGAAGAGTCACATGCTTTCTCATGTTTTCGGAACTCATGAGTGCTCATTATGTAAAATgacttttaaagaaaaagatgATCTAAATATTCATCTTAGTGAAGATCATATTAATTTTCATGGATCTAAAGAGAGTAATGAAGAAGATACAGATCATAGATGTGAAGATTGTGGTAAAGTATTTAGAAGCACAATTGCCTTAAGGAAACACAAAACAACCCACACAGGGGAGAGGACAGTCTTATGCTCACTCTGTGGTAAAACTCTAGCAAATCTGAATAGTTTGCGAGTGCACATGAGAATTCATTCTGAAGAAAGACCATATACTTGCAGTGAATGTGGGAAATCATTCAAAGGTCCATCTGAATTACGTTCTCACTCAGTCACACATTCTCGGGAAAAAATACATAACTGTCCTGAATGTGGAAGAAAATTTCATTCTAAAGGACTAGTGAGACAACATATGTTGAGCCACACTCATGACAAACCACATAAATGTGACATGTGCACAGCCTCTTTCAATCGCTTAGGTAATCTGAATCAACATAAGAAGAAGCATGTAGATAAGACTGTAATTCCGACTGTCACACCTTTTGAGTGCAATGCATGCGGAAAACGATTTCAGTCAAAACTCACATTAAAGTATCACTTAGCAAAGCATACTGGTGATAAGTATCCATTTGATTGTGAAATATGTGGTAAAAAATTTATAGCTATCGACCCTTACCGTGTTCACATGAGAGTTCATACTGGTGAACGTCCCTTTGAATGTGAAATATGTAAGAAGACATTTCGCAGTTCCGGAACTTTAAAACAACATATTACTTCTCTTCATAGAGATGACTTTCCATTTGGTTGTCCTTACTGTCAGAGGAGTTTCAAGCGTCTGCAATCCTTAATTGTTCATAAAAAAACCcatactggagagaaaccaTGGCTATGTTCACAATGTGGACGAGCATTTGCTCAGAAAGGTGATATGATCAAGCATACCAAAACCCATCGACCTAATGTAGAAGAAGAGGAGATAATAATGGAAGTTGATACTATTGATGATTTAGCATTAGacaatgaaatttcaaaaatgatttttgGTTAA
Protein Sequence
MPTSRIFCLAKSCYNYQPSPGSPAFFNLPSDLESRVKWVENAGRSDLKEKTVSTLSGKYYICADHFEPYCFIDPAKRSLLRRDVDVLPTNFKSNLASLASMDDNKSFRDSQSTLAGTVLAEVESAQEILNAAVVSEDVLDGAEWTNIVAVSLSDDGSLMCNTLNSPSQELTEHSVSFNSGNNADSNEMVMECLMLCRLCAALVQVNMLVSIFGDESDKEIKDMIDQIIPGQVMMDDGLPQRVCTSCVERVRNCCEIVDSFKAADSRLRQMVELCNLDDTNGSLTLQDNGSLPIILQTVDESPEVELDGINTNITSHFSEDQTTLDGFVSDSMQLNSRNVKEEASVTNLPTSECITIGDTINFNVQVDGNSLSFQGTEHIKCGVCHQEFEEPADLVSHCMNYHSIKIDDGSVFPTEDISNAFQCTICDHILPNGNFLKSHMLSHVFGTHECSLCKMTFKEKDDLNIHLSEDHINFHGSKESNEEDTDHRCEDCGKVFRSTIALRKHKTTHTGERTVLCSLCGKTLANLNSLRVHMRIHSEERPYTCSECGKSFKGPSELRSHSVTHSREKIHNCPECGRKFHSKGLVRQHMLSHTHDKPHKCDMCTASFNRLGNLNQHKKKHVDKTVIPTVTPFECNACGKRFQSKLTLKYHLAKHTGDKYPFDCEICGKKFIAIDPYRVHMRVHTGERPFECEICKKTFRSSGTLKQHITSLHRDDFPFGCPYCQRSFKRLQSLIVHKKTHTGEKPWLCSQCGRAFAQKGDMIKHTKTHRPNVEEEEIIMEVDTIDDLALDNEISKMIFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733192; iTF_00732032; iTF_00731641;
90% Identity
iTF_00733192;
80% Identity
iTF_00733192;