Ffus015837.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010001048.1:129114-132222[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.027 2.3 9.6 0.8 2 19 381 398 380 403 0.89 2 13 0.00054 0.047 14.9 0.2 1 23 422 444 422 444 0.98 3 13 0.00025 0.021 16.0 0.9 1 23 449 472 449 472 0.95 4 13 5e-05 0.0043 18.2 5.0 1 23 489 511 489 511 0.97 5 13 6.1e-05 0.0052 17.9 0.3 3 23 519 539 518 539 0.98 6 13 4.1e-06 0.00035 21.6 0.2 1 23 545 567 545 567 0.96 7 13 0.00014 0.012 16.8 3.0 1 23 573 595 573 595 0.97 8 13 0.00019 0.016 16.4 3.4 1 23 601 623 601 623 0.98 9 13 0.00084 0.072 14.3 1.3 1 23 635 657 635 657 0.97 10 13 0.00033 0.028 15.6 0.1 1 23 664 686 664 686 0.97 11 13 1.5e-06 0.00013 23.0 0.9 1 23 692 715 692 715 0.97 12 13 2e-05 0.0017 19.5 1.1 3 23 723 743 721 743 0.98 13 13 3.9e-05 0.0034 18.5 0.5 3 23 751 771 750 771 0.99
Sequence Information
- Coding Sequence
- ATGCCGCCGTCTCGTATATTTTGCTTAGCCAAATCTTGCTATAACTATCAGCCCTCTCCGTTATCACCAGCGTTTTTCAACCTTCCAAGTGACTTGGCAAGCCGTGTTAAGTGGGTGGAGAATGCAGGACGTTCTGATTTGAAAGAGAAGACTGTTTCAACCCTCTCTGGAAAGTACTACATATGTGCAGATCATTTTGAACCTTCCTGTTTTTTTGATCCTTCTAAGAGAACACTTCTGAGAAGAGACGTTGATGTTGTTCCTACAATTTTTAAAAGCAATTTGGCCTCTCTAGTCACCATGGATGATAACAAAAGCTTTAGAGACAGTCAAAGTACTTTGGCTGGGTCAGTATTAGCTGAAGTTGAGTCAGCGCAGGAAATTTTAAATGCTGCTGTTGTATCAGAAGATGTCTTAGACGGTGCAGAGTGGACTAACATTGTGGCAGTTAGCTTAGGCGATGATGGAAGTCTCATGTGTAACACATTGAACTCCCCTGCTCAGGAACTAACTGAGCATTCAGTAAGTTTTACCTCAGTTAATAATGCAGACTCCAATGAAATGGTCATGGAATGTCTCATGCTTTGTCGTCTTTGTGCTGCCCTTGTACAAGTTAATATGCTTGTTTCTATATTTGGCAATGAGTCTGATCAGACAGTAAAAGATATGATAGATCGTATCATACCTGGTCAAGTCTTGATGGATGATGGCCTCCCTCAGCGCATTTGTACAAGTTGTTTGGAGAAAGTCAGAAGTTGCTGTGAAATACTTGACTCATTCAAAGCAGCAGATTCTCGACTGAGACAAATGGTCGAACTATGCAACTTGGATAATTCAAACGAAAGCCTTACTTTGCAAGGGGATGGTAGCCTCCCAATAATACTTCAAACTGTTGATGAATCTCCAGAGGTAGAATTAACTGGTATTGATGACAGTATTACTTCCCACTTTACTGAAGATCAGACATCTTTAGATGGCTTTGTTCCTCACTCATTACAGTTAAACTCAAGGAACGGGAAGCAAGAAGCACCTGAAGCTGATTTTCCAACTTCTGGATGTATAGCCATTTCTGACACTTTAGACTTCAATGTTCATGTAGAAGCAGGAGATGAGCTAAGCTTCCAGAACTCAGGACAAATCAAGTGTGGTGTTTGTCACGAAGTCTTTGAGGAACCATCTGATCTTGTTTCTCACTGCATGAATTATCATTCCATTAAAATTGATGATGGGTCTGTCTTTTCTCCAGATGACATTAGCAATGCTTTTCAATGCACTATTTGTGAAGTTATTTTGCCTAATTCAAATTCCTTAAAAAGCCATATGCTTTCTCATGCCCTTGGGACTTATGAGTGCTCCTTATGCAAactaaattttaaagaaaaaagtgaaCTAAATAATCACTTGAGTCAGGAGCATGGTTCTTGCCATAGTGAATCTAAAGAGAGTACTGAAGAGGGTAGAGAGCATCGATGTGAACATTGTGGCAAAGTGTTCAGAAGTACAATTGCTTtaagaaaacacaaaacaacCCATACAGGTGAGAGGACAGTTCTGTGCTCACTTTGTGGTAAAACTCTTGCAAATCTGAACAGTTTGCGAGTGCATATGAGAATTCATTCAGGAGAAAGGCCTTATGCTTGTAGTGAATGTGGGAAATCATTCAAAGGTCCATCAGAACTACGCTCTCATTCCGTTACCCATTCTCGAGAAAAAATTCATAACTGCCCAGAATGTGGAAGAAAATTTCATTCCAAAGGACTTGTAAGACAACATATGTTGAGCCACACTCATGATAAACCACACAAGTGTGACATGTGCACTGCCTCTTTCAATCGCCTAGGTAATCTGAATCAACATAAGAAGAAGCATGTTGATAAAACTGCTGTTCCAGCTGTAACGCCATTTGAGTGTAATGCATGTGGAAAACGTTTTCAGTCAAAGCTCACTTTGAAGTACCACCTTGCAAAGCATACTGGAGACAAGTACCCATTTGATTGTGAAATATGTGGTAAAAAATTTATAGCTATTGACCCGTACCGTGTTCACATGAGAGTTCATACAGGGGAACGTCCATATGAGTGTGAAGTATGTAAGAAGACATTTCGCAGTTCTGGAACTTTGAAACAACACATTTCTTCTCTTCACAGAGATGATTTCCCATTTGGTTGTCCTTATTGTCAAAGGAGCTTTAAACGTTTGCAATCATTAATTGTTCATAAAAAGACACATACTGGAGAAAAGCCATGGTTGTGTTCTCAATGTGGGCGAGCCTTTGCTCAGAAGGGTGACATGATCAAACATACTAAAACCCATCGACCCAATGTAGAAGAAGAGGAGATTATCATGGAGGTGGATACTATTGATGATTCAGCATTAgttaatgaaatttcaaagatGATTTTTGGCTAG
- Protein Sequence
- MPPSRIFCLAKSCYNYQPSPLSPAFFNLPSDLASRVKWVENAGRSDLKEKTVSTLSGKYYICADHFEPSCFFDPSKRTLLRRDVDVVPTIFKSNLASLVTMDDNKSFRDSQSTLAGSVLAEVESAQEILNAAVVSEDVLDGAEWTNIVAVSLGDDGSLMCNTLNSPAQELTEHSVSFTSVNNADSNEMVMECLMLCRLCAALVQVNMLVSIFGNESDQTVKDMIDRIIPGQVLMDDGLPQRICTSCLEKVRSCCEILDSFKAADSRLRQMVELCNLDNSNESLTLQGDGSLPIILQTVDESPEVELTGIDDSITSHFTEDQTSLDGFVPHSLQLNSRNGKQEAPEADFPTSGCIAISDTLDFNVHVEAGDELSFQNSGQIKCGVCHEVFEEPSDLVSHCMNYHSIKIDDGSVFSPDDISNAFQCTICEVILPNSNSLKSHMLSHALGTYECSLCKLNFKEKSELNNHLSQEHGSCHSESKESTEEGREHRCEHCGKVFRSTIALRKHKTTHTGERTVLCSLCGKTLANLNSLRVHMRIHSGERPYACSECGKSFKGPSELRSHSVTHSREKIHNCPECGRKFHSKGLVRQHMLSHTHDKPHKCDMCTASFNRLGNLNQHKKKHVDKTAVPAVTPFECNACGKRFQSKLTLKYHLAKHTGDKYPFDCEICGKKFIAIDPYRVHMRVHTGERPYECEVCKKTFRSSGTLKQHISSLHRDDFPFGCPYCQRSFKRLQSLIVHKKTHTGEKPWLCSQCGRAFAQKGDMIKHTKTHRPNVEEEEIIMEVDTIDDSALVNEISKMIFG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733372;
- 90% Identity
- iTF_00731641;
- 80% Identity
- iTF_00731641;