Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763307.1:154417-160045[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.031 1.7 9.2 0.2 2 23 565 587 564 587 0.95

2 15 0.00032 0.017 15.4 0.3 1 23 593 616 593 616 0.97

3 15 0.00015 0.008 16.5 0.7 3 23 626 646 625 646 0.97

4 15 0.00036 0.019 15.3 0.6 1 23 654 676 654 676 0.97

5 15 0.00039 0.021 15.1 2.6 1 23 684 706 684 706 0.98

6 15 7.9e-05 0.0043 17.3 0.3 1 23 711 733 711 733 0.97

7 15 7.5e-07 4.1e-05 23.7 3.5 1 23 741 763 741 763 0.99

8 15 0.049 2.7 8.5 3.0 1 23 769 792 769 792 0.98

9 15 2.6e-05 0.0014 18.9 3.1 1 23 834 857 834 857 0.97

10 15 0.00021 0.011 16.0 1.5 3 23 865 885 863 885 0.96

11 15 7.8e-05 0.0042 17.3 0.7 3 23 893 913 891 913 0.96

12 15 9.9e-05 0.0054 17.0 0.3 1 23 919 941 919 941 0.97

13 15 0.00046 0.025 14.9 2.0 2 21 952 971 951 973 0.92

14 15 3.5e-05 0.0019 18.4 2.4 1 23 979 1001 979 1001 0.99

15 15 0.00062 0.033 14.5 3.8 1 23 1007 1030 1007 1030 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.031	1.7	9.2	0.2	2	23	565	587	564	587	0.95
2	15	0.00032	0.017	15.4	0.3	1	23	593	616	593	616	0.97
3	15	0.00015	0.008	16.5	0.7	3	23	626	646	625	646	0.97
4	15	0.00036	0.019	15.3	0.6	1	23	654	676	654	676	0.97
5	15	0.00039	0.021	15.1	2.6	1	23	684	706	684	706	0.98
6	15	7.9e-05	0.0043	17.3	0.3	1	23	711	733	711	733	0.97
7	15	7.5e-07	4.1e-05	23.7	3.5	1	23	741	763	741	763	0.99
8	15	0.049	2.7	8.5	3.0	1	23	769	792	769	792	0.98
9	15	2.6e-05	0.0014	18.9	3.1	1	23	834	857	834	857	0.97
10	15	0.00021	0.011	16.0	1.5	3	23	865	885	863	885	0.96
11	15	7.8e-05	0.0042	17.3	0.7	3	23	893	913	891	913	0.96
12	15	9.9e-05	0.0054	17.0	0.3	1	23	919	941	919	941	0.97
13	15	0.00046	0.025	14.9	2.0	2	21	952	971	951	973	0.92
14	15	3.5e-05	0.0019	18.4	2.4	1	23	979	1001	979	1001	0.99
15	15	0.00062	0.033	14.5	3.8	1	23	1007	1030	1007	1030	0.98

Sequence Information

Coding Sequence: ATGGGAACCTTATTCTTAGGAGTGAACAAATTCCTATCAACTTTTAGTGATGTGATCAATATGATGATGGATTTGGGCATTCTTTCCTCCAATGTGTTCTCATATAATGTTGCGCAAGATTTATCAACAATGGTGGTGGAGGAAAGACACATTGAATccttttcaaaatttctgaaGGAGACCAAGGATCTTCTGAATCAATTAAATGACCAACTATCCCATAGAAGCAAGGAGGGATTCGAAGACATAGTCCTTGGATTTCAAGGTAGATCCTCTATTGTCACTGATTCAATTGATGTCAATGCTCCATGCAACTCTGAAGGAAAAGCACATGAGAGCTCATTCACATCTACATGTGGAAACGCAACATACGCTCAAATGAAAACTGCTTCAGCTCTTGATGTTGGATTCAGTTCGACATCTCAACAGCGATATGGGAGCATGAATGATGCAGGATGTGAAATCTCTACTGGAAGATTCTCACCATTAAATGAAACTCAGTTTAACACTGCAACTGCTCTTTCTCGAAATCGTCACTATGCTGTTCCTGACAATAGTTCCTGCTACGACATTACAGCATCTTCAGTTGGCCATGATAATTCTCTGTCATCACATAGTGCAGCATTCAGTCTTCCTAACCATATGGTTGTTAGCTCACATTTTCAGTCAAATTGTGAATCTGCTTTTGATGGGTCAACAAACCCAATGATGCATTTTACATCCTGCAGTCGCAATACATCATTGAAGCAATTTTCAACACCTGCTGAATCACAGAATCATGATACACAGTATGTCTCCCATGATAAAAGTCAAGATTTCTCTTCAAAGCCTAGTTGTGAATTTGCCCAACCGAATGATACAAGAGATTCTCAGCGTTTTACCTCACCTCAAGGACATTTTTCCCCTCCAACCGAGTCAAATTGTGATACTATGTATACTTCTCGCTGTGAAACAACTCAAGATGCGCATTTCAGCTGTGACACTTCATATGAGACTTCTAACCATTCAGGTCATGGACTGCATGCTTCTCGTGTACCATTTCAGACTTCTACTGAACAGTCACTAAATACTCATTATTCTCATCCATCGTTATCAGCTGAATCAAATTTTGGAATTCCATCTAAAAGTCAGCATTCTTCAGCCTTTTCTATGGTTACTGCAATAAATTCATCTCAGTATGCATCCTGTCAAAGTAATAGTGATAAATCTCAGTTTCCATCCGGAGAAAACGGTCAAAGCAAGATGCATTACCCACAAAGAAACACTATGTGTGAATCCACATTTCCACAAATGACTGGGAATAATAGTTTTGTTGAACTGAGTGATGATTCACATAACACCCATATAACTGCACAAGGCGTTAATGAAATAAAATACCCTCATGTGTCAAGCTTTAAGTGGGGTGTCTTAAGTGATACTGAAGACAGCTTTGACCCAAGTTCGCCAGTTCAGACAACTAACCAGACTCAAGACAGTACAGAGTTTGGAGATTTGCAGATAGCATTTCCTAATCAAGTTGCTAAGGATACTGCAAGTCTGAAAAGAGATGACACTGGGAAAGATGTGTTAGGAACTTCAGTAGAAAACAGTTTCTCATTTTTGTTAGGAACGAGAGACACTATGGGCTGTGTTGATATGAATAAGAAAAAACTAGATATTTTTGATGGAGTTaagcaggagggagggaaatGGAAATGCCCTGTCTGTGCCAAATTATTTATTGCTCGTGTTAATTTTGAAAGGCATTTTAAAGTTCAACATTTAGGTCAAAAGGCATTTCCTTGTAATTTGTGTGACAAAGGATTCTCCAGCAAGATTCGTCTTGATGCCCATTTAATGAGGCAGCATAATATAAACTGTGAATCAGCAAACCCATGCAATGTTTGTGGGAAATTGTTCAACACTAAAACAGCTTTGAAAACACATAGTCTCACTCATGTTGATGAAAGCGAGAAACCTTTTGCATGTAATATTTGTAGTAAACGATTTTCTCAAAAAGTTGTATTAGACACTCATCTTCTTCGACATGGAGGTCCAAGTGCTTACAAATTTCAAtgcaaaatatgttcaaaaaGTTTCCCAACCAAGCcaaaattgaaatttcattGGAGAAAGCATGAGACTGCCCAATTTCATTGCAAAGAATGCCCCAAAGAGTTTCCCAATGAAGGCCTTTTACGGGCTCATGAAGCAACTCATGTAGCTTTTTCTGAACGTCCTTTCCAATGTTCAGAGTGTCCGAAAACTTTTACAACAAAACATAAATTGCAATCACATATTGAGACACACAGTCAGACCAATCAATACTCTTGTGATGAGTGTTCGTCTGTCTTTAAATGTCGCAGCACATTAGTTGCACATACCAGAAAGCGACACCCGAAATCTGATAGACTTCTACCAAACCCTACCTCTGACTGCCCTGACGCAAGTTCAACTTTTCCCTCTGCTCAGCCAATTCCTCAGCTAGAGTCACCCCATGCACTTACTTCAAAccCCACGTTCAAGTGCCCAATATGTCTCAAAGAGTTTCGCCGAAAGAAAAATTTACGGGAGCATGAAATTACCTGTCATCAAGAAGTGCCTCGTTTAGCCTGTGATCACTGCCCAAAACGTTTCAAAGCAAAAACCAAACTGAAAATACATCTTGCAACCCACACTGAGGAACCAAGCTTAGCTTGCAGAACATGTGGCAAAAGATTTTATCGCTCAGACTTGCTTCGTACTCATGAAGCTACTCACACTGGGAACAAACCATTTTCTTGTGATGTTTGTGCTCGGAGGTTTGCTACTCAATCTATGCTAAGATCTCATCAAGTAATTCATCAACCCCCACCAGAGACATCAGCCGAAGTTCCTTGTCCCACCTGTGGTAAAAAGTTTAAAAACAAGCGAACTCTTGCTCTTCATGTGAAATGCCATGCAGAATCCTTAGAATTTAAATGTGGAACTTGTGGTAAACAATTTGCTCGTCGAGTGCACTACGATGGGCACATGAGAACACACAGTGCAGATCGTCCCTACTCGTGTACTGTTTGTAATCGGACTTTCCGTGAACGCAAGCACAGGGCTGATCACATGAGACGTTTACACCCTAATGAAGTTCTTGGAGGTGGAGAATTGACTCTTCAAAAGTTGATTGAATCAATATCAGCCGATGACACTATGGACGCTACAACGGGAGGTGGAAGTTTTGCAACGGATGTTAATTCAGATGCCCTCGCAACTTTAACAGAATTATCCAACTCTGGGATGCAACATCTTTTGGAAGACTCATCTCAACAGAATTCTGAGCCCCATATTGATGACACTAGTCAAAGTCAGGGCAGCCAAATCAATGCCAACTATGGTCCAGGGCCAAGAACCATATCTTTAGAACCTCAAGTGGACAGTGTTAATCAGAATAGCCAGATGAACCATTTAAACCAGTCATTTTCATCACAACCTCATAATGTTAATATTGATTGCCAGGCTGATTTAACAGCATCAAACCAGGTAAACCACCTCACAGAATCTTTTTCAGTTCAGGCGCAGAATATTTCACTTCTCCAGAATCCTTTCCATCACTTAAAAAGCTCTGCCAATGAAACCCACCCATTTACTTGTTCTGAAAGTGGTGATCTTAGCCCCTTACCAGAGCTATCTGATCAGTTGCAATCAATGGAGGTTCTTCATCCTCATTATGGTCATGGTGGCGAATCCACTAGGTCAAGTTCTGTGGGTGGTTCTGACGAGAGTCTTCCAAAACTGGCAGATGTTTTAGCCATTAGCATTCAGGGTGGTATGTAA
Protein Sequence: MGTLFLGVNKFLSTFSDVINMMMDLGILSSNVFSYNVAQDLSTMVVEERHIESFSKFLKETKDLLNQLNDQLSHRSKEGFEDIVLGFQGRSSIVTDSIDVNAPCNSEGKAHESSFTSTCGNATYAQMKTASALDVGFSSTSQQRYGSMNDAGCEISTGRFSPLNETQFNTATALSRNRHYAVPDNSSCYDITASSVGHDNSLSSHSAAFSLPNHMVVSSHFQSNCESAFDGSTNPMMHFTSCSRNTSLKQFSTPAESQNHDTQYVSHDKSQDFSSKPSCEFAQPNDTRDSQRFTSPQGHFSPPTESNCDTMYTSRCETTQDAHFSCDTSYETSNHSGHGLHASRVPFQTSTEQSLNTHYSHPSLSAESNFGIPSKSQHSSAFSMVTAINSSQYASCQSNSDKSQFPSGENGQSKMHYPQRNTMCESTFPQMTGNNSFVELSDDSHNTHITAQGVNEIKYPHVSSFKWGVLSDTEDSFDPSSPVQTTNQTQDSTEFGDLQIAFPNQVAKDTASLKRDDTGKDVLGTSVENSFSFLLGTRDTMGCVDMNKKKLDIFDGVKQEGGKWKCPVCAKLFIARVNFERHFKVQHLGQKAFPCNLCDKGFSSKIRLDAHLMRQHNINCESANPCNVCGKLFNTKTALKTHSLTHVDESEKPFACNICSKRFSQKVVLDTHLLRHGGPSAYKFQCKICSKSFPTKPKLKFHWRKHETAQFHCKECPKEFPNEGLLRAHEATHVAFSERPFQCSECPKTFTTKHKLQSHIETHSQTNQYSCDECSSVFKCRSTLVAHTRKRHPKSDRLLPNPTSDCPDASSTFPSAQPIPQLESPHALTSNPTFKCPICLKEFRRKKNLREHEITCHQEVPRLACDHCPKRFKAKTKLKIHLATHTEEPSLACRTCGKRFYRSDLLRTHEATHTGNKPFSCDVCARRFATQSMLRSHQVIHQPPPETSAEVPCPTCGKKFKNKRTLALHVKCHAESLEFKCGTCGKQFARRVHYDGHMRTHSADRPYSCTVCNRTFRERKHRADHMRRLHPNEVLGGGELTLQKLIESISADDTMDATTGGGSFATDVNSDALATLTELSNSGMQHLLEDSSQQNSEPHIDDTSQSQGSQINANYGPGPRTISLEPQVDSVNQNSQMNHLNQSFSSQPHNVNIDCQADLTASNQVNHLTESFSVQAQNISLLQNPFHHLKSSANETHPFTCSESGDLSPLPELSDQLQSMEVLHPHYGHGGESTRSSSVGGSDESLPKLADVLAISIQGGM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732040;
90% Identity: -
80% Identity: -